Clone Sequence Records
BS17583.3prime Sequence
906 bp (816 high quality bases) assembled on 2007-05-15
> BS17583.3prime
ATGGTCTAGAAAGCTTTTAATGAGGCTCCCTTTGTGGATCATATGGCGCA
TTTCGCCCAACTTTCCACTGCTGTTCCAGTTGGTTTTTATCGCAGATTTT
ATTGGCCAGAACCTTGCCAACCTTATGACCACTAGCCAATTGGGCTTCCA
GGCACCACACCCATATTTGGCCCTGTTGGATCCACCGATGACGGTGATTG
TAGTACCAGTACTGATTCCCACCATTTTTGTGACAACGAAAGAGCCACAC
CGACTTTGAGCGTAGGCCCTGCGCTTCCAAGCAATCATCTTTGCTGTTCG
TCAGTTGAATCTCATGATCCTGCGTTAAGGACCAGTTCTGATGCTCGCCG
GGCATTGAATTATGCCCAGTGCACCGGGCTAAAACCACGGGCTTAGTGTG
TCTACAATTCAGGGAGTCCACACAGAATCCAGGAAATGCCACACTTTCAA
TGACCCCGGAGAAAACCAAAGGCGAATCCAATGCTAGGTACCTTTTAAGA
AAATCCGGAGCCACCTTGGTCATGTACCAATCGAAGGTCTTGCACTCCAG
AGCATTTCTCTTGGTTTTCCTTTGGAAAAGCAGACCAGCATTGGCCATCT
TATAGAGCTTCGGATTCTTGTCGTACACATACTTTTTGTAATTATCCATC
CAAACTTCAGCTACTCGCTTGTAGTTCCTGGCCAGAAAATTGTGGTATCC
TGGACTACTAATCGATTTCATGGGTCTTTTACCTATGTGACCCACCCGGG
CGCAAGGTACATACAGCATCATTCCACCACACATCCAGACCTTAAAACTT
ATCTCGAACTTCTCGGCTTCCCAGGTGTCCAGCTGCTCATCAAATCCCCC
CAGATTCAAGAAATAGTTCCTGTCAATCGCCATAGCTCCTGATAAAACCG
GTGTAC
BS17583.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31776-PA | 1893 | CG31776-RA | 1004..1893 | 906..17 | 4450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31776-RA | 1964 | CG31776-RA | 1036..1925 | 906..17 | 4450 | 100 | Minus |
| pgant4-RC | 2543 | CG31956-RC | 1294..1526 | 855..623 | 235 | 73.9 | Minus |
| pgant4-RB | 2411 | CG31956-RB | 1162..1394 | 855..623 | 235 | 73.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3471665..3472325 | 677..17 | 3305 | 100 | Minus |
| 2L | 23513712 | 2L | 3471330..3471559 | 906..677 | 1150 | 100 | Minus |
| 2L | 23513712 | 2L | 3474020..3474141 | 855..734 | 190 | 77 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:14:36 has no hits.
BS17583.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:32 Download gff for
BS17583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31776-PA | 1004..1893 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:04 Download gff for
BS17583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31776-RA | 1036..1925 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:01 Download gff for
BS17583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31776-RA | 1036..1925 | 17..906 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:01 Download gff for
BS17583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3471330..3471559 | 677..906 | 100 | -> | Minus |
| 2L | 3471666..3472325 | 17..676 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:04 Download gff for
BS17583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3471330..3471559 | 677..906 | 100 | -> | Minus |
| arm_2L | 3471666..3472325 | 17..676 | 100 | | Minus |
BS17583.complete Sequence
1925 bp assembled on 2010-06-25
GenBank Submission: KX806005
> BS17583.complete
GAAGTTATCAGTCGACATGAATGTGGATCTGAGATTGATTGTGCGCCTGT
TGCTGGCCATTCTATTGACTTCCTTGGTAACTACCATTTTAATGGGCAAG
CAGATACACAGAAGACTCGTGAAGTCCATGGTCAAAACAACCGGCGAAAA
GGATAGTTTGCCAGCAAGGCAGCTCCCAAAAAGGGAGATCAGCCCGAAGG
TCGCAGATTTCCCACCACCACTAACACTGAACCAAACTGAACTGGACATC
TTAAAGATCCAGCGAAACAATAGTTTCCGCCTGCCCCAGCAAGAAGCTAT
TAAGGAGTGGCAGGATGCGATTTTCTTTAAAGAGGATAGTAACCGCAGGG
GATTGGGTGAGCAGGGAAGAGCAGTTCAGTTACCAAACGCTAAATTAAAC
CCCGATGATTTCCAAGACTTCTATGCCGAACTCTCCGATCGCATTCCCCT
GAACAGATCCTTGCCGGATACCAGACCTATAAGTTGCCGGAAACGGAAGT
ATCTGGAGAACCTACCCAATGTGACAGTGATAATAGCCTTTCACGATGAA
CACCTAAGCGTTTTGCTAAGATCTATAACGAGCATTATAAATCGATCTCC
TGTTGAGTTACTCAAGCAGATTGTGCTCGTGGATGACGATAGTAATTTGC
CGGAATTGGGACAACAACTGGAAGAGATTGTGGCTCAAAACTTTCCGAAA
ATTATTCACATACTAAGACTTCCAGAACGACGTGGTTCCATCAAAGCGAG
AATGGAGGCAATCAGGGTGTCCAGCTGTCAAGTTTTGGTCTTTCTAGACT
CCCACATCGAAGTCAACACCAATTGGTTGCCTCCCTTGCTGGAACCTATA
GTTATTAACCCACATATAGTCACCCGTCCCATTTTGGATGCCATCTCACG
CAAGACATTTGCCTATGCCAAACAAAATACGATGACTCGCTCCGGTTTCA
ATTGGTGGCTTGAGTCTGAGAGCTTACCAATTTTTCCTGAGGATAAAAGT
CCTGATTCCACACCCTACCGTACACCGGTTTTATCAGGAGCTATGGCGAT
TGACAGGAACTATTTCTTGAATCTGGGGGGATTTGATGAGCAGCTGGACA
CCTGGGAAGCCGAGAAGTTCGAGATAAGTTTTAAGGTCTGGATGTGTGGT
GGAATGATGCTGTATGTACCTTGCGCCCGGGTGGGTCACATAGGTAAAAG
ACCCATGAAATCGATTAGTAGTCCAGGATACCACAATTTTCTGGCCAGGA
ACTACAAGCGAGTAGCTGAAGTTTGGATGGATAATTACAAAAAGTATGTG
TACGACAAGAATCCGAAGCTCTATAAGATGGCCAATGCTGGTCTGCTTTT
CCAAAGGAAAACCAAGAGAAATGCTCTGGAGTGCAAGACCTTCGATTGGT
ACATGACCAAGGTGGCTCCGGATTTTCTTAAAAGGTACCTAGCATTGGAT
TCGCCTTTGGTTTTCTCCGGGGTCATTGAAAGTGTGGCATTTCCTGGATT
CTGTGTGGACTCCCTGAATTGTAGACACACTAAGCCCGTGGTTTTAGCCC
GGTGCACTGGGCATAATTCAATGCCCGGCGAGCATCAGAACTGGTCCTTA
ACGCAGGATCATGAGATTCAACTGACGAACAGCAAAGATGATTGCTTGGA
AGCGCAGGGCCTACGCTCAAAGTCGGTGTGGCTCTTTCGTTGTCACAAAA
ATGGTGGGAATCAGTACTGGTACTACAATCACCGTCATCGGTGGATCCAA
CAGGGCCAAATATGGGTGTGGTGCCTGGAAGCCCAATTGGCTAGTGGTCA
TAAGGTTGGCAAGGTTCTGGCCAATAAAATCTGCGATAAAAACCAACTGG
AACAGCAGTGGAAAGTTGGGCGAAATGCGCCATATGATCCACAAAGGGAG
CCTCATTAAAAGCTTTCTAGACCAT
BS17583.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31776-RA | 1893 | CG31776-PA | 1..1893 | 17..1909 | 9465 | 100 | Plus |
| pgant4-RC | 1935 | CG31956-PC | 1094..1326 | 1071..1303 | 235 | 73.4 | Plus |
| pgant4-RB | 1935 | CG31956-PB | 1094..1326 | 1071..1303 | 235 | 73.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31776-RA | 1964 | CG31776-RA | 32..1925 | 16..1909 | 9470 | 100 | Plus |
| pgant4-RC | 2543 | CG31956-RC | 1294..1526 | 1071..1303 | 235 | 73.4 | Plus |
| pgant4-RB | 2411 | CG31956-RB | 1162..1394 | 1071..1303 | 235 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3471665..3472325 | 1249..1909 | 3305 | 100 | Plus |
| 2L | 23513712 | 2L | 3470213..3470680 | 16..483 | 2340 | 100 | Plus |
| 2L | 23513712 | 2L | 3471136..3471559 | 826..1249 | 2120 | 100 | Plus |
| 2L | 23513712 | 2L | 3470732..3471076 | 482..826 | 1725 | 100 | Plus |
| 2L | 23513712 | 2L | 3474020..3474141 | 1071..1192 | 190 | 77 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:47:44 has no hits.
BS17583.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:47 Download gff for
BS17583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31776-RA | 33..1923 | 17..1907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:43 Download gff for
BS17583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31776-RA | 33..1923 | 17..1907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:10 Download gff for
BS17583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31776-RA | 33..1923 | 17..1907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:10 Download gff for
BS17583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3470214..3470680 | 17..483 | 100 | -> | Plus |
| 2L | 3470734..3471076 | 484..826 | 100 | -> | Plus |
| 2L | 3471137..3471559 | 827..1249 | 100 | -> | Plus |
| 2L | 3471666..3472323 | 1250..1907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:43 Download gff for
BS17583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3470214..3470680 | 17..483 | 100 | -> | Plus |
| arm_2L | 3470734..3471076 | 484..826 | 100 | -> | Plus |
| arm_2L | 3471137..3471559 | 827..1249 | 100 | -> | Plus |
| arm_2L | 3471666..3472323 | 1250..1907 | 100 | | Plus |
BS17583.pep Sequence
Translation from 16 to 1908
> BS17583.pep
MNVDLRLIVRLLLAILLTSLVTTILMGKQIHRRLVKSMVKTTGEKDSLPA
RQLPKREISPKVADFPPPLTLNQTELDILKIQRNNSFRLPQQEAIKEWQD
AIFFKEDSNRRGLGEQGRAVQLPNAKLNPDDFQDFYAELSDRIPLNRSLP
DTRPISCRKRKYLENLPNVTVIIAFHDEHLSVLLRSITSIINRSPVELLK
QIVLVDDDSNLPELGQQLEEIVAQNFPKIIHILRLPERRGSIKARMEAIR
VSSCQVLVFLDSHIEVNTNWLPPLLEPIVINPHIVTRPILDAISRKTFAY
AKQNTMTRSGFNWWLESESLPIFPEDKSPDSTPYRTPVLSGAMAIDRNYF
LNLGGFDEQLDTWEAEKFEISFKVWMCGGMMLYVPCARVGHIGKRPMKSI
SSPGYHNFLARNYKRVAEVWMDNYKKYVYDKNPKLYKMANAGLLFQRKTK
RNALECKTFDWYMTKVAPDFLKRYLALDSPLVFSGVIESVAFPGFCVDSL
NCRHTKPVVLARCTGHNSMPGEHQNWSLTQDHEIQLTNSKDDCLEAQGLR
SKSVWLFRCHKNGGNQYWYYNHRHRWIQQGQIWVWCLEAQLASGHKVGKV
LANKICDKNQLEQQWKVGRNAPYDPQREPH*
BS17583.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31776-PA | 630 | CG31776-PA | 1..630 | 1..630 | 3355 | 100 | Plus |
| pgant4-PC | 644 | CG31956-PC | 12..629 | 5..618 | 1267 | 42.2 | Plus |
| pgant4-PB | 644 | CG31956-PB | 12..629 | 5..618 | 1267 | 42.2 | Plus |
| pgant6-PC | 666 | CG2103-PC | 10..648 | 1..618 | 1121 | 38.3 | Plus |
| pgant6-PB | 666 | CG2103-PB | 10..648 | 1..618 | 1121 | 38.3 | Plus |
