Clone Sequence Records
BS17585.3prime Sequence
847 bp (720 high quality bases) assembled on 2007-05-15
> BS17585.3prime
ATGGTCTAGAAAGCTTTCACCCTCCTCCGCATCCTCTACGCTTTCCGCCT
GGCAGCCGCCTTTGGCGTTCCTGTTCCACGGCCGCAAAGTATTCCGAGGC
AGCTTGCTCGCAAGCTGCTTCAAACGGAGCCATGTTGATCTTTCCGTTGA
CCATCATTGTGTCCCCCTGATCCTGGCCATGGTTGGCCTTGACTTTCAGC
TTGCTTTCCCGGGACTTGGCCTCCAGGATCTTCTCGCGACGGTTCTCGCG
CTCGAACATGGCTGTTAGTAGGGGTTTGTCGTTCTTGGCTGACATGACCA
TGTTGTCGGAGACTTCGACGAGAAAAGTGGCTCCCAGCTGGCTGCCACAG
CTCACGAATTTCCCGTTCTCGTTGGTCCGGACACAATAAAGAGGTTCATC
GCACACCTTGACCGTGAGAACGGGCTCGTTCTGCTGCTGCAGCAGATCCC
AGGTGTCCAAGACGCCATCCATGCGAGTGATAAAGAACTGGGAGACTTTC
GTGTAACTCCAAGCGCCATCGGTCAGCATCGAGCTGCTGCTCTTGGTCCA
GATGATGGAGCTCTCTCTGCAATCCTCCGACCAGATTCGGGCACACCAGT
CGCCCACAGTTAGGAAATTCTTAACAAACGCCGGATTTCGGGTAATGGCA
TACACCGGGCCGAGGTGGCACATCATCCGTATCTGAATCTTCTCCGTGGG
CGTCTTGCCCTTTCGATTGCAGGAGAAGAGCATGCCCATCTCAGTTCCCG
CCATGAATCTTGTAGGTATGGTGGTCTCGTACTCTAGCACTGATATTCCA
TAGGATCTGGAGAGATCCTGATCGTCACTCTTCACCGGATCCATGAG
BS17585.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6053-PA | 1716 | CG6053-RA | 901..1712 | 847..36 | 4060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6053-RB | 1885 | CG6053-RB | 938..1768 | 847..17 | 4140 | 99.9 | Minus |
CG6053-RC | 1881 | CG6053-RC | 938..1764 | 847..17 | 4070 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11697625..11697862 | 260..497 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 11697342..11697565 | 36..259 | 1120 | 100 | Plus |
3L | 28110227 | 3L | 11697918..11698097 | 498..677 | 900 | 100 | Plus |
3L | 28110227 | 3L | 11698156..11698326 | 677..847 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:06:43 has no hits.
BS17585.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:20 Download gff for
BS17585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6053-PA | 901..1716 | 32..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:15 Download gff for
BS17585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6053-RB | 938..1774 | 9..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:51 Download gff for
BS17585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6053-RB | 938..1774 | 9..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:51 Download gff for
BS17585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11697625..11697862 | 260..497 | 100 | <- | Plus |
3L | 11697918..11698096 | 498..676 | 100 | <- | Plus |
3L | 11698156..11698326 | 677..847 | 100 | | Plus |
3L | 11697342..11697565 | 36..259 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:15 Download gff for
BS17585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11690442..11690665 | 36..259 | 100 | <- | Plus |
arm_3L | 11690725..11690962 | 260..497 | 100 | <- | Plus |
arm_3L | 11691018..11691196 | 498..676 | 100 | <- | Plus |
arm_3L | 11691256..11691426 | 677..847 | 100 | | Plus |
BS17585.5prime Sequence
847 bp (816 high quality bases) assembled on 2007-05-15
> BS17585.5prime
GAAGTTATCAGTCGACATGGAATATATATTCAAGAAGGAGCGACGCTCCT
TTGGAGCCCGTGTTCACTTCGAGGACAAAGATGAGGTGGTGTTCACCGAG
AACTCGAATCCGGAGCTAGTCAAGAGCTACATTCTCAAAAACCCCGTGGA
CCGGGTGACGCAATACGCCGGACAAACCTCACTGAGTGTGGCCAATACGG
AAAGGGCAACGTACAAGAGTACGGGAATCACCCACAATGAGGGCGGATGG
CCAAAGGACATCAACATGCATGACCCGGAGCAGACGGTGCGATACAAGCG
GAAAATCGAGAAAGACGAGAATTATATCACCCAGGTGATGAATCTGACCA
AGCCCATGGAGCACTACATCCACCAAAACAATGCGGTCAACATCTATGAG
AACTACTTCGAAAATCTCGATCCAGCTCCACTGCCCGAGCCTTGTAAGTC
GCGCACGGTCAATGTGTACAGGGATCCCAATCCCATAAAGGTGCCAGTGA
AGCATTTGTCCTGGTCACCGGATGGCGGCATCAAAATGGCCGTCAGTCAT
TGCGACATGCGGTTCCAGGGCGACAAGTCCAACCAGAAGTGCAACTCGTA
CATATGGGAGGTGGAGAATCCCAACGAACCCTTCCTCACCCTGGAACCGA
AGGTGCCGTGCGTGTGTCTCGAGTACAACCAGAAGGATCCAACCAGTCTC
GTGAGTGGCATGTACAATGGTCAGGTGGCCGCCTGGGACACGCGACATGG
CAAACTACCAGTTATGATCAGCGAACGGGAGGTGTGCCATCGGGATCCGG
TTAACTCGGTGCTTTGGAACATTTCCAAGAGTGGCACAGAGTTCTTC
BS17585.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6053-PA | 1716 | CG6053-RA | 1..831 | 17..847 | 4130 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6053-RC | 1881 | CG6053-RC | 38..868 | 17..847 | 4140 | 99.9 | Plus |
CG6053-RB | 1885 | CG6053-RB | 38..868 | 17..847 | 4140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11698396..11699226 | 847..17 | 4140 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:44:47 has no hits.
BS17585.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:17 Download gff for
BS17585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6053-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:17:17 Download gff for
BS17585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6053-RB | 23..868 | 2..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:36 Download gff for
BS17585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6053-RB | 23..868 | 2..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:36 Download gff for
BS17585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11698396..11699241 | 2..847 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:17:17 Download gff for
BS17585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11691496..11692341 | 2..847 | 99 | | Minus |
BS17585.complete Sequence
1763 bp assembled on 2012-04-25
GenBank Submission: KX800363
> BS17585.complete
GAAGTTATCAGTCGACATGGAATATATATTCAAGAAGGAGCGACGCTCCT
TTGGAGCCCGTGTTCACTTCGAGGACAAAGATGAGGTGGTGTTCACCGAG
AACTCGAATCCGGAGCTAGTCAAGAGCTACATTCTCAAAAACCCCGTGGA
CCGGGTGACGCAATACGCCGGACAAACCTCACTGAGTGTGGCCAATACGG
AAAGGGCAACGTACAAGAGTACGGGAATCACCCACAATGAGGGCGGATGG
CCAAAGGACATCAACATGCATGACCCGGAGCAGACGGTGCGATACAAGCG
GAAAATCGAGAAAGACGAGAATTATATCACCCAGGTGATGAATCTGACCA
AGCCCATGGAGCACTACATCCACCAAAACAATGCGGTCAACATCTATGAG
AACTACTTCGAAAATCTCGATCCAGCTCCACTGCCCGAGCCTTGTAAGTC
GCGCACGGTCAATGTGTACAGGGATCCCAATCCCATAAAGGTGCCAGTGA
AGCATTTGTCCTGGTCACCGGATGGCGGCATCAAAATGGCCGTCAGTCAT
TGCGACATGCGGTTCCAGGGCGACAAGTCCAACCAGAAGTGCAACTCGTA
CATATGGGAGGTGGAGAATCCCAACGAACCCTTCCTCACCCTGGAACCGA
AGGTGCCGTGCGTGTGTCTCGAGTACAACCAGAAGGATCCAACCAGTCTC
GTGAGTGGCATGTACAATGGTCAGGTGGCCGCCTGGGACACGCGACATGG
CAAACTACCAGTTATGATCAGCGAACGGGAGGTGTGCCATCGGGATCCGG
TTAACTCGGTGCTTTGGAACAATTCCAAGAGTGGCACAGAGTTCTTCTCC
GGCGGTTCCGATGGTCAGGTGCTGTGGTGGGATACCAGGAAGCTTACCGA
ACCGCTGGACCGCCTGCTCATGGATCCGGTGAAGAGTGACGATCAGGATC
TCTCCAGATCCTATGGAATATCAGTGCTAGAGTACGAGACCACCATACCT
ACAAGATTCATGGCGGGAACTGAGATGGGCATGCTCTTCTCCTGCAATCG
AAAGGGCAAGACGCCCACGGAGAAGATTCAGATACGGATGATGTGCCACC
TCGGCCCGGTGTATGCCATTACCCGAAATCCGGCGTTTGTTAAGAATTTC
CTAACTGTGGGCGACTGGTGTGCCCGAATCTGGTCGGAGGATTGCAGAGA
GAGCTCCATCATCTGGACCAAGAGCAGCAGCTCGATGCTGACCGATGGCG
CTTGGAGTTACACGAAAGTCTCCCAGTTCTTTATCACTCGCATGGATGGC
GTCTTGGACACCTGGGATCTGCTGCAGCAGCAGAACGAGCCCGTTCTCAC
GGTCAAGGTGTGCGATGAACCTCTTTATTGTGTCCGGACCAACGAGAACG
GGAAATTCGTGAGCTGTGGCAGCCAGCTGGGAGCCACTTTTCTCGTCGAA
GTCTCCGACAACATGGTCATGTCAGCCAAGAACGACAAACCCCTACTAAC
AGCCATGTTCGAGCGCGAGAACCGTCGCGAGAAGATCCTGGAGGCCAAGT
CCCGGGAAAGCAAGCTGAAAGTCAAGGCCAACCATGGCCAGGATCAGGGG
GACACAATGATGGTCAACGGAAAGATCAACATGGCTCCGTTTGAAGCAGC
TTGCGAGCAAGCTGCCTCGGAATACTTTGCGGCCGTGGAACAGGAACGCC
AAAGGCGGCTGCCAGGCGGAAAGCGTAGAGGATGCGGAGGAGGCTGAAAG
CTTTCTAGACCAT
BS17585.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6053-RB | 1731 | CG6053-PB | 1..1731 | 17..1747 | 8655 | 100 | Plus |
CG6053-RC | 1758 | CG6053-PC | 1..1727 | 17..1747 | 8560 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6053-RB | 1885 | CG6053-RB | 38..1768 | 17..1747 | 8655 | 100 | Plus |
CG6053-RC | 1881 | CG6053-RC | 38..1764 | 17..1747 | 8560 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11698156..11699226 | 1087..17 | 5355 | 100 | Minus |
3L | 28110227 | 3L | 11697625..11697862 | 1504..1267 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 11697342..11697565 | 1728..1505 | 1120 | 100 | Minus |
3L | 28110227 | 3L | 11697918..11698097 | 1266..1087 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:11:09 has no hits.
BS17585.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:17:00 Download gff for
BS17585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6053-RA | 23..1753 | 2..1732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:30 Download gff for
BS17585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6053-RB | 38..1767 | 17..1746 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:27 Download gff for
BS17585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6053-RB | 38..1767 | 17..1746 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:16 Download gff for
BS17585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6053-RA | 38..1753 | 17..1732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:58 Download gff for
BS17585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6053-RB | 38..1767 | 17..1746 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:58 Download gff for
BS17585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11697625..11697862 | 1267..1504 | 100 | <- | Minus |
3L | 11697918..11698096 | 1088..1266 | 100 | <- | Minus |
3L | 11697342..11697565 | 1505..1728 | 100 | <- | Minus |
3L | 11697244..11697261 | 1729..1746 | 100 | <- | Minus |
3L | 11698156..11699226 | 17..1087 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:27 Download gff for
BS17585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11690442..11690665 | 1505..1728 | 100 | <- | Minus |
arm_3L | 11690725..11690962 | 1267..1504 | 100 | <- | Minus |
arm_3L | 11691018..11691196 | 1088..1266 | 100 | <- | Minus |
arm_3L | 11690344..11690361 | 1729..1746 | 100 | <- | Minus |
arm_3L | 11691256..11692326 | 17..1087 | 100 | | Minus |
BS17585.pep Sequence
Translation from 16 to 1746
> BS17585.pep
MEYIFKKERRSFGARVHFEDKDEVVFTENSNPELVKSYILKNPVDRVTQY
AGQTSLSVANTERATYKSTGITHNEGGWPKDINMHDPEQTVRYKRKIEKD
ENYITQVMNLTKPMEHYIHQNNAVNIYENYFENLDPAPLPEPCKSRTVNV
YRDPNPIKVPVKHLSWSPDGGIKMAVSHCDMRFQGDKSNQKCNSYIWEVE
NPNEPFLTLEPKVPCVCLEYNQKDPTSLVSGMYNGQVAAWDTRHGKLPVM
ISEREVCHRDPVNSVLWNNSKSGTEFFSGGSDGQVLWWDTRKLTEPLDRL
LMDPVKSDDQDLSRSYGISVLEYETTIPTRFMAGTEMGMLFSCNRKGKTP
TEKIQIRMMCHLGPVYAITRNPAFVKNFLTVGDWCARIWSEDCRESSIIW
TKSSSSMLTDGAWSYTKVSQFFITRMDGVLDTWDLLQQQNEPVLTVKVCD
EPLYCVRTNENGKFVSCGSQLGATFLVEVSDNMVMSAKNDKPLLTAMFER
ENRREKILEAKSRESKLKVKANHGQDQGDTMMVNGKINMAPFEAACEQAA
SEYFAAVEQERQRRLPGGKRRGCGGG*
BS17585.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6053-PB | 576 | CG6053-PB | 1..576 | 1..576 | 3099 | 100 | Plus |
CG6053-PC | 585 | CG6053-PC | 1..570 | 1..570 | 3057 | 99.8 | Plus |
CG1571-PA | 651 | CG1571-PA | 5..533 | 2..520 | 894 | 35 | Plus |
CG10859-PB | 627 | CG10859-PB | 7..538 | 2..518 | 751 | 32.6 | Plus |
CG10859-PA | 627 | CG10859-PA | 7..538 | 2..518 | 751 | 32.6 | Plus |