Clone BS17587 Report

Search the DGRC for BS17587

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG7839-RA
Protein status:BS17587.pep: full length peptide match
Sequenced Size:3557

Clone Sequence Records

BS17587.3prime Sequence

871 bp (848 high quality bases) assembled on 2007-05-15

> BS17587.3prime
ATGGTCTAGAAAGCTTTTAGTGTTTTCGTTTCTTGCCCGCTTTCTGTGGT
CTACCGCCTTTGGCCGCTGGTTTGCCGGCGAACTTCTTGCCCTTGTAGGA
TTTGGAGTTCGATCGTCGGTTTTCTTCCCATTTCAATTGTTTGTCGGAGG
ACTTGTCCTTGTTAAAGACGGCATTGCTGGTTCCCTGACCCTTTACCTTG
GCCGTCTCCTCCAGCAGCGAAGAGAAGTCATCGGCGGCAGCAAACAGAGA
GGACATATCGTGACTCTGTTTGAGTGTTTTGGCAAAGCTTCGTCCTCCCA
CCATGTCGGTGGAGTCTTTGCGGGATTTTTTGGATCTCGGTGGTGCATCT
TCGTCGTCGTCATCCTCTTCGTCTGGACTCTCAGGAGCATCGCTTGAATC
ACTGTCGCCAGGGCCGCCTTCTGAAATCGAGCCCTCATCGTCATCATCAT
CATCATCATCGTCGTCGTCATCAAGTGGCTGCAAATCAATCGAGCCCGTT
TCATCATCGGACTGATCTTCGCCCTCAATTTCATCATCTTCATCTTCTGC
CAAGTCGTCATCACCCCAGTCGTCATCAATATCGTCCATTTCATCTTCCG
CCTTGTCGGACTGCTTCTTCTTTTTCTTATCCTTGGACTTATCCTTCTTT
ATCTCGCCACCCAGCTCCTGCAGGAAGTTCAGCTCCTCTTCATCCTGCTC
TTCGTCGACACCTTCCTTGAACTTCTTGCCGAAATATCCATCCAAATAGG
CCTCGAACTCATCGTCATCTACTTCGCCCTCCTTCANGTATTCCTCTCCA
GCCTCGCCATCATCTCCCTCTTCTGCGGCGTCCTTCTTGATCTCCTTTTG
CTTTTTGTTCTGCGCCACATT

BS17587.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7839-PA 3525 CG7839-RA 2673..3525 869..17 4246 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7839-RA 3714 CG7839-RA 2765..3618 869..16 4259 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11077716..11078326 869..259 3044 99.8 Minus
3L 28110227 3L 11078397..11078640 259..16 1220 100 Minus
Blast to na_te.dros performed on 2015-02-13 11:59:05 has no hits.

BS17587.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:32 Download gff for BS17587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7839-PA 2670..3525 17..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:55:33 Download gff for BS17587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7839-RA 2762..3620 12..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:23 Download gff for BS17587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7839-RA 2762..3620 12..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:23 Download gff for BS17587.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11077713..11078326 259..871 99 -> Minus
3L 11078398..11078642 12..258 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:55:33 Download gff for BS17587.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11070813..11071426 259..871 99 -> Minus
arm_3L 11071498..11071742 12..258 99   Minus

BS17587.5prime Sequence

817 bp (816 high quality bases) assembled on 2007-05-15

> BS17587.5prime
GAAGTTATCAGTCGACATGCCGGCAGCAGTGGCCACAGGTGTGCAATTCG
GTGGACCGCCCAAAAACAAGAAAATCGTGTTCGACGACTCCGGCGAGGCG
GTAGTTAAACAAAACAAAAAAGAGCACCCACAAAGGCCAAAATTTGAAGG
GAAGGAACAGGTGAAAAAGCCGCAGAAAATTAAGTTTGGAGAGGATGGAA
AAGCGAAAGGTGCTAAGTCCTTTAATAAGAACCACCAAAAGCCGGATTTT
GCCAACAAACCACAGAGAATAAAGTTCGGCGATGATGGAGAACAAGTAGC
TTCCAAGTCGTTCAACCAAAATCATAAAAATGGACCAAAACCACAGAAAA
TCAAATTTGGAGAGGATAGAGAAGCAGTGCATCAAAAACCTTTCAACAAA
AACAACCATAAACATAATGGTCAAAAGTCGGACTTCGCCAATAAACCTCA
GAAAATCAAGTTCACTGATGATGGAGAAGATGAAGTAACTGCGAATTCTT
CCAACACAAAGACGGAACCGACCAAGAAGTCCCAAAAAATCAAGTTTGGA
GATGACGGAGAGTCCAAGGAGAACTTTAAAAAGCCCCAACGAATCAAGTT
TGATGAGGATGGAGCTGGAAAAAATGTATCCGACAGCGATGGAGACAGTG
ATGAGGAACTGGGGGACTCCATTTCCAAAAAGCACAACAAATATCAGTCA
AAAATAGATGAAGACGAGGAGTCCCAAAAGAAGTGGTATCATGTGCATCC
CGACTATCCGTCCACCGATGAGGTGCTGGACATGAAGGAGAACGATCAGC
TGGAGCTGTACAATCTC

BS17587.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7839-PA 3525 CG7839-RA 1..801 17..817 3980 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7839-RA 3714 CG7839-RA 92..893 16..817 3995 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11074860..11075589 16..745 3635 99.9 Plus
3L 28110227 3L 11075654..11075726 745..817 365 100 Plus
Blast to na_te.dros performed 2015-02-13 06:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 82..198 334..458 121 60.6 Plus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 1884..2004 306..426 119 57.7 Plus

BS17587.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:30 Download gff for BS17587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7839-PA 1..801 17..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:20:17 Download gff for BS17587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7839-RA 92..893 16..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:03 Download gff for BS17587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7839-RA 92..893 16..817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:03 Download gff for BS17587.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11074860..11075589 16..745 99 -> Plus
3L 11075655..11075726 746..817 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:20:17 Download gff for BS17587.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11067960..11068689 16..745 99 -> Plus
arm_3L 11068755..11068826 746..817 100   Plus

BS17587.complete Sequence

3557 bp assembled on 2010-06-09

GenBank Submission: KX802530

> BS17587.complete
GAAGTTATCAGTCGACATGCCGGCAGCAGTGGCCACAGGTGTGCAATTCG
GTGGACCGCCCAAAAACAAGAAAATCGTGTTCGACGACTCCGGCGAGGCG
GTAGTTAAACAAAACAAAAAAGAGCACCCACAAAGGCCAAAATTTGAAGG
GAAGGAACAGGTGAAAAAGCCGCAGAAAATTAAGTTTGGAGAGGATGGAA
AAGCGAAAGGTGCTAAGTCCTTTAATAAGAACCACCAAAAGCCGGATTTT
GCCAACAAACCACAGAGAATAAAGTTCGGCGATGATGGAGAACAAGTAGC
TTCCAAGTCGTTCAACCAAAATCATAAAAATGGACCAAAACCACAGAAAA
TCAAATTTGGAGAGGATAGAGAAGCAGTGCATCAAAAACCTTTCAACAAA
AACAACCATAAACATAATGGTCAAAAGTCGGACTTCGCCAATAAACCTCA
GAAAATCAAGTTCACTGATGATGGAGAAGATGAAGTAACTGCGAATTCTT
CCAACACAAAGACGGAACCGACCAAGAAGTCCCAAAAAATCAAGTTTGGA
GATGACGGAGAGTCCAAGGAGAACTTTAAAAAGCCCCAACGAATCAAGTT
TGATGAGGATGGAGCTGGAAAAAATGTATCCGACAGCGATGGAGACAGTG
ATGAGGAACTGGGGGACTCCATTTCCAAAAAGCACAACAAATATCAGTCA
AAAATAGATGAAGACGAGGAGTCCCAAAAGAAGTGGTATCATGTGCATCC
CGACTATCCGTCCACCGATGAGGTGCTGGACATGAAGGAGAACGATCAGC
TGGAGCTGTACAATCTCTGCAAGAATTCCTTCGAAGCGGAGAAGATAACT
TTTAATAAACGTAATCCCTCGGATGCTCGCTGGTTGCAAACCGCTCTGCA
CAAGGGTACTGCAAAGGATCGGGCCAATGCGGGCGCCCTTCTGGTGACGA
GCAATCCACTGGGCAATTTGGAAGCATTGAGCACTTTAATTGGCTTCTGC
AAGATCTCCAACAAGGCCAGCAATGATGTGATTGCAGTGCTCACGGATTT
GTGGCAGGAGGTGCTGCTCCCGCCAAACAGAAAACTCCTGGCGGTGCACA
CACGTGGTGCTGATTGGAAAAAGCTGAAAAAGGATGAGAATTTGCGCAAC
GAACAGAAGCGCCGCATTTACGCGTACTGGCATTTTGAGAGCGAATTAAA
GGATCAGTACCACGAGTTCTTGAAGAACGTTATGCAGGGCCTGCAGACTG
GACAGGAACACAATAAGAACTCCTCTATTGTGTCAGCAGCCAGGCTGTTG
GCCTATGCTCCCGAAAAGGAGCAGCTGCTGCTAACCATGCTGGTAAACAA
ACTGGGCGATCCCATCGCCAAGATTGCCTCCAAGGCGTTGCATCACCTCA
GCGAGGTGGCCCAGAAACATCCGAACATGTGCGGTGTTATTGTTGCCGAA
GCGGAGAAGCTACTTTTCCGTAACAATATTTCCGAGCGAGCGCAGCACTT
TGCACTGTGCTTCCTCTCCAGCATCGCACCCTCTGGCCGGCCCGAAGTCT
GCACCAAGTTGGTCAATATATGCTTTGCCCTCTTCAAGGTTCTCGTGCAG
AAGGGAGCCGTAAATAATAGGACCATGCAGGCCATCCTTCGATGCTTGCA
AAAAGCTATCGTGGAGGCTAAGCCGGCAAAGGATAGCAATGGGGAATTAC
TCACCAAGGAAATGCAGGACACCATCTACCGATTGGTCCACTTGGCTGAC
ATTAGGGTCGCTGTACAGACTCTCGGCCTGCTGCTGCAATTGGTTGCAGT
AAAAACTGAGAAATCGGATCGGTTTTATAATGCTTTATATGTAAAGCTGC
TGGATCTGAACCTAATTAATGTGGGTAGCAAAACGGCGGCTCATCTACTG
CATATTGTACATCGTGCCATCCACATCGACAACCATGTGGCCAGGGCCCA
GGCATTCGTGAAGCGTCTGCTGCAGTTGACCCTATACGCTCCACCGCACA
TTGCAGCTGGTTGTTTAATCGTCATCCACAAGTTGCTGCGCATGCGCCGT
GAGCTAATTGGCGGCACTGGAGCTTCTGAGGAAGTGGAGGAAGGTTCCAA
AGTTGTTCTACCAATCAGTGCGGATCTGGACAAGTTCGGTAGCGACGATG
AGGAGGTCTACGAGGATGTTAAAGATGAGGCGGATGATACTAAGGACTCC
AATCCATTGGAGGAGAAGGCAGACAATGATGTTAAGTCAAGTGCATCATC
CTGGCATCATGCCCGTGTGGCTGCCACAGAGGCCAAGGTGCGGGATATTG
ATTCCTGCAAGTACGATCCGTACCATCGAGTGCCCGCTTTTGCAGGAGCT
GCATATGCACTCCGCCATGAACTGTTGTTGCTGCGGCAACACTACCATCC
CACCGTTCAGGTCTTCGCCGAACAGATTCTTCAGCAATCACGCATTGATT
ACTATGGTGATCCGCTCAGAGATTTCGGATTGCCCCACTTTTTGGAACGT
TTCGCCTTTAAGAATCCGAAAAAGCTGGAAGCTTCACAAGCAGCGGAAAA
TGCTACCGTGGCACACAAGCGATACATGGCTCACGGAGCGCGAGGAAGAC
CAGTGAAATCGCTGACCAAGGCCAACTGTACCGAGGACGAGATGTTCATC
TTCAACTTCTTGGAGCATAAACGTAGACAGGCGGAAATTGTGGCGCAGAA
CAAAAAGCAAAAGGAGATCAAGAAGGACGCCGCAGAAGAGGGAGATGATG
GCGAGGCTGGAGAGGAATACCTGAAGGAGGGCGAAGTAGATGACGATGAG
TTCGAGGCCTATTTGGATGGATATTTCGGCAAGAAGTTCAAGGAAGGTGT
CGACGAAGAGCAGGATGAAGAGGAGCTGAACTTCCTGCAGGAGCTGGGTG
GCGAGATAAAGAAGGATAAGTCCAAGGATAAGAAAAAGAAGAAGCAGTCC
GACAAGGCGGAAGATGAAATGGACGATATTGATGACGACTGGGGTGATGA
CGACTTGGCAGAAGATGAAGATGATGAAATTGAGGGCGAAGATCAGTCCG
ATGATGAAACGGGCTCGATTGATTTGCAGCCACTTGATGACGACGACGAT
GATGATGATGATGATGACGATGAGGGCTCGATTTCAGAAGGCGGCCCTGG
CGACAGTGATTCAAGCGATGCTCCTGAGAGTCCAGACGAAGAGGATGACG
ACGACGAAGATGCACCACCGAGATCCAAAAAATCCCGCAAAGACTCCACC
GACATGGTGGGAGGACGAAGCTTTGCCAAAACACTCAAACAGAGTCACGA
TATGTCCTCTCTGTTTGCTGCCGCCGATGACTTCTCTTCGCTGCTGGAGG
AGACGGCCAAGGTAAAGGGTCAGGGAACCAGCAATGCCGTCTTTAACAAG
GACAAGTCCTCCGACAAACAATTGAAATGGGAAGAAAACCGACGATCGAA
CTCCAAATCCTACAAGGGCAAGAAGTTCGCCGGCAAACCAGCGGCCAAAG
GCGGTAGACCACAGAAAGCGGGCAAGAAACGAAAACACTAAAAGCTTTCT
AGACCAT

BS17587.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7839-RA 3525 CG7839-PA 1..3525 17..3541 17610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7839-RA 3714 CG7839-RA 92..3618 16..3542 17620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11075829..11077403 861..2435 7875 100 Plus
3L 28110227 3L 11077463..11078326 2436..3299 4320 100 Plus
3L 28110227 3L 11074860..11075589 16..745 3635 99.9 Plus
3L 28110227 3L 11078397..11078640 3299..3542 1220 100 Plus
3L 28110227 3L 11075654..11075773 745..864 600 100 Plus
Blast to na_te.dros performed 2014-11-28 02:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 82..198 334..458 121 60.6 Plus

BS17587.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-09 09:28:49 Download gff for BS17587.complete
Subject Subject Range Query Range Percent Splice Strand
CG7839-RA 91..3613 17..3539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:25 Download gff for BS17587.complete
Subject Subject Range Query Range Percent Splice Strand
CG7839-RA 93..3615 17..3539 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:59 Download gff for BS17587.complete
Subject Subject Range Query Range Percent Splice Strand
CG7839-RA 93..3615 17..3539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:59 Download gff for BS17587.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11074861..11075589 17..745 99 -> Plus
3L 11075655..11075769 746..860 100 -> Plus
3L 11075829..11077403 861..2435 100 -> Plus
3L 11077463..11078326 2436..3299 100 -> Plus
3L 11078398..11078637 3300..3539 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:25 Download gff for BS17587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11067961..11068689 17..745 99 -> Plus
arm_3L 11068755..11068869 746..860 100 -> Plus
arm_3L 11068929..11070503 861..2435 100 -> Plus
arm_3L 11070563..11071426 2436..3299 100 -> Plus
arm_3L 11071498..11071737 3300..3539 100   Plus

BS17587.pep Sequence

Translation from 16 to 3540

> BS17587.pep
MPAAVATGVQFGGPPKNKKIVFDDSGEAVVKQNKKEHPQRPKFEGKEQVK
KPQKIKFGEDGKAKGAKSFNKNHQKPDFANKPQRIKFGDDGEQVASKSFN
QNHKNGPKPQKIKFGEDREAVHQKPFNKNNHKHNGQKSDFANKPQKIKFT
DDGEDEVTANSSNTKTEPTKKSQKIKFGDDGESKENFKKPQRIKFDEDGA
GKNVSDSDGDSDEELGDSISKKHNKYQSKIDEDEESQKKWYHVHPDYPST
DEVLDMKENDQLELYNLCKNSFEAEKITFNKRNPSDARWLQTALHKGTAK
DRANAGALLVTSNPLGNLEALSTLIGFCKISNKASNDVIAVLTDLWQEVL
LPPNRKLLAVHTRGADWKKLKKDENLRNEQKRRIYAYWHFESELKDQYHE
FLKNVMQGLQTGQEHNKNSSIVSAARLLAYAPEKEQLLLTMLVNKLGDPI
AKIASKALHHLSEVAQKHPNMCGVIVAEAEKLLFRNNISERAQHFALCFL
SSIAPSGRPEVCTKLVNICFALFKVLVQKGAVNNRTMQAILRCLQKAIVE
AKPAKDSNGELLTKEMQDTIYRLVHLADIRVAVQTLGLLLQLVAVKTEKS
DRFYNALYVKLLDLNLINVGSKTAAHLLHIVHRAIHIDNHVARAQAFVKR
LLQLTLYAPPHIAAGCLIVIHKLLRMRRELIGGTGASEEVEEGSKVVLPI
SADLDKFGSDDEEVYEDVKDEADDTKDSNPLEEKADNDVKSSASSWHHAR
VAATEAKVRDIDSCKYDPYHRVPAFAGAAYALRHELLLLRQHYHPTVQVF
AEQILQQSRIDYYGDPLRDFGLPHFLERFAFKNPKKLEASQAAENATVAH
KRYMAHGARGRPVKSLTKANCTEDEMFIFNFLEHKRRQAEIVAQNKKQKE
IKKDAAEEGDDGEAGEEYLKEGEVDDDEFEAYLDGYFGKKFKEGVDEEQD
EEELNFLQELGGEIKKDKSKDKKKKKQSDKAEDEMDDIDDDWGDDDLAED
EDDEIEGEDQSDDETGSIDLQPLDDDDDDDDDDDDEGSISEGGPGDSDSS
DAPESPDEEDDDDEDAPPRSKKSRKDSTDMVGGRSFAKTLKQSHDMSSLF
AAADDFSSLLEETAKVKGQGTSNAVFNKDKSSDKQLKWEENRRSNSKSYK
GKKFAGKPAAKGGRPQKAGKKRKH*

BS17587.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7839-PA 1174 CG7839-PA 1..1174 1..1174 6125 100 Plus
l(2)01289-PG 1191 CG9432-PG 774..946 904..1079 225 31.3 Plus
l(2)01289-PM 1193 CG9432-PM 774..946 904..1079 225 31.3 Plus
l(2)01289-PG 1191 CG9432-PG 813..979 907..1071 208 30 Plus
l(2)01289-PM 1193 CG9432-PM 813..979 907..1071 208 30 Plus
l(2)01289-PG 1191 CG9432-PG 713..889 885..1079 201 27.6 Plus
l(2)01289-PG 1191 CG9432-PG 745..923 902..1082 201 27.1 Plus
l(2)01289-PM 1193 CG9432-PM 713..889 885..1079 201 27.6 Plus
l(2)01289-PM 1193 CG9432-PM 745..923 902..1082 201 27.1 Plus
CG8108-PA 919 CG8108-PA 287..468 967..1153 188 28.7 Plus
CG8108-PB 919 CG8108-PB 287..468 967..1153 188 28.7 Plus
l(2)01289-PG 1191 CG9432-PG 821..1001 895..1084 187 28.5 Plus
l(2)01289-PG 1191 CG9432-PG 702..804 947..1065 176 33.6 Plus
l(2)01289-PM 1193 CG9432-PM 702..804 947..1065 176 33.6 Plus