Clone BS17589 Report

Search the DGRC for BS17589

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptssx-RB
Protein status:BS17589.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17589.5prime Sequence

804 bp (738 high quality bases) assembled on 2007-05-15

> BS17589.5prime
GAAGTTATCAGTCGACATGTCCAACGCGGATAAGATGCAGGACCAGGAGC
ACGACGACGAGCAGTCCTCCGACATAGAGGGATCCGGCGACAATGTGGGC
CGTGATGACGGCACCGACGATGACGACGACAGCAACGGCAACATGCAGCA
GGAGAATGGAGATGGCGGCAACGGTGGCGACGGCCAGGAGCACTCTGGCG
ACGAGGAGCAACACCACAGCCAGGACAACGAGGGCAACGATAACTCCGCA
GGCCAACAGCAGCAAATGCAGCAAGTGGACCGAACCAGCGCCACCAATCT
GATCATCAATTACTTGCCACAGGACATGACCGACCGCGAACTGTACAACC
TCTTTAGCGGCTGCGGGCCCATCAACACCTGCAAGATAATGCGCGACTTC
AAGACCGGATATAGCTTCGGCTACGGCTTCGTGGACTACAAAACGGAGTC
GGACTCGGAGGACGCCATCCAGAAGCTAAATGGCTTCTATGTGCGCAACA
AGCGATTAAAGGTGTCGTATGCTCGACCGGGTGGGCAGTCCATTAAGGAT
ACGAATTTGTACGTCATCAACCTGTCGCGAAACATCAACGACGACATGCT
CGACCGCATCTTCTCGCCCTATGGCCTGATTGTTCAGCGAAACATCCTGC
GGGATAAGCTCACTGGACGACCGCGCGGCGTTGCTTTTGTGCGTTACAAT
AAGCGCGAGGAAGCTCAAGAGGCGATCAAGGCGCTGAACAACACGGTGCC
GGAGGGCGGATCCCAGCCCATCTGGGTACGACTCGCCGAGGAACACGGCA
AGGC

BS17589.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3056-PA 1458 CG3056-RA 1..788 17..804 3915 99.8 Plus
CG3056-PB 1332 CG3056-RB 1..788 17..804 3915 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
ssx-RE 3635 CG3056-RE 161..949 16..804 3930 99.9 Plus
ssx-RD 2945 CG3056-RD 161..949 16..804 3930 99.9 Plus
ssx-RB 3055 CG3056-RB 161..949 16..804 3930 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1371449..1371774 78..403 1630 100 Plus
X 23542271 X 1372084..1372267 510..693 920 100 Plus
X 23542271 X 1371913..1372025 402..514 565 100 Plus
X 23542271 X 1372460..1372571 693..804 545 99.1 Plus
X 23542271 X 1371307..1371371 16..80 325 100 Plus
X 23542271 X 7085624..7085730 398..292 205 79.4 Minus
Blast to na_te.dros performed 2015-02-12 10:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 550..617 83..150 142 67.6 Plus

BS17589.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:13 Download gff for BS17589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3056-PB 1..788 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:21 Download gff for BS17589.5prime
Subject Subject Range Query Range Percent Splice Strand
ssx-RB 157..949 10..804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:36 Download gff for BS17589.5prime
Subject Subject Range Query Range Percent Splice Strand
ssx-RB 157..949 10..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:36 Download gff for BS17589.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1371303..1371370 10..79 95 -> Plus
X 1371451..1371774 80..403 100 -> Plus
X 1371915..1372022 404..511 100 -> Plus
X 1372086..1372267 512..693 100 -> Plus
X 1372461..1372571 694..804 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:21 Download gff for BS17589.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1265336..1265403 10..79 95 -> Plus
arm_X 1265484..1265807 80..403 100 -> Plus
arm_X 1265948..1266055 404..511 100 -> Plus
arm_X 1266119..1266300 512..693 100 -> Plus
arm_X 1266494..1266604 694..804 99   Plus

BS17589.3prime Sequence

322 bp (321 high quality bases) assembled on 2007-05-15

> BS17589.3prime
ATGGTCTAGAAAGCTTTTACCTAAATTTCTGTGCATGGTTATATGGATGC
GGTTTTTGAGATCGTGTTGTTCTATTTGATCTACCTCTGTGCGCCATGTG
GTGGAAGTTACCACCACCGCCTCCACCGCCGCCGCCACCACCACCACCGC
CGCCTCCGTGAATGGGCATGCCCATGCCCATGCCCATTCCCATGTTTACG
CCCATGCCCATGTTCATGCCCATCGGGTGCATTTGCTGCATGTGGTGCGG
ATGCGGGCCGCCCATGTTGTGGTGGTTGTTGTTGTTGTTGTTATGATGGT
GGTTGTTGGGGTGATTGTTGTT

BS17589.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3056-PB 1332 CG3056-RB 1027..1327 322..22 1505 100 Minus
CG3056-PA 1458 CG3056-RA 1027..1266 322..83 1200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
ssx-RE 3635 CG3056-RE 1188..1488 322..22 1505 100 Minus
ssx-RC 3096 CG3056-RC 1229..1529 322..22 1505 100 Minus
ssx-RB 3055 CG3056-RB 1188..1488 322..22 1505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1372810..1373110 322..22 1505 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:59:23 has no hits.

BS17589.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:52 Download gff for BS17589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3056-PB 1027..1332 17..322 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:29 Download gff for BS17589.3prime
Subject Subject Range Query Range Percent Splice Strand
ssx-RB 1188..1497 13..322 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:59 Download gff for BS17589.3prime
Subject Subject Range Query Range Percent Splice Strand
ssx-RB 1188..1497 13..322 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:59 Download gff for BS17589.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1372810..1373119 13..322 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:29 Download gff for BS17589.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1266843..1267152 13..322 99   Minus

BS17589.complete Sequence

1364 bp assembled on 2007-10-17

GenBank Submission: KX802462

> BS17589.complete
GAAGTTATCAGTCGACATGTCCAACGCGGATAAGATGCAGGACCAGGAGC
ACGACGACGAGCAGTCCTCCGACATAGAGGGATCCGGCGACAATGTGGGC
CGTGATGACGGCACCGACGATGACGACGACAGCAACGGCAACATGCAGCA
GGAGAATGGAGATGGCGGCAACGGTGGCGACGGCCAGGAGCACTCTGGCG
ACGAGGAGCAACACCACAGCCAGGACAACGAGGGCAACGATAACTCCGCA
GGCCAACAGCAGCAAATGCAGCAAGTGGACCGAACCAGCGCCACCAATCT
GATCATCAATTACTTGCCACAGGACATGACCGACCGCGAACTGTACAACC
TCTTTAGCGGCTGCGGGCCCATCAACACCTGCAAGATAATGCGCGACTTC
AAGACCGGATATAGCTTCGGCTACGGCTTCGTGGACTACAAAACGGAGTC
GGACTCGGAGGACGCCATCCAGAAGCTAAATGGCTTCTATGTGCGCAACA
AGCGATTAAAGGTGTCGTATGCTCGACCGGGTGGGCAGTCCATTAAGGAT
ACGAATTTGTACGTCATCAACCTGTCGCGAAACATCAACGACGACATGCT
CGACCGCATCTTCTCGCCCTATGGCCTGATTGTTCAGCGAAACATCCTGC
GGGATAAGCTCACTGGACGACCGCGCGGCGTTGCTTTTGTGCGTTACAAT
AAGCGCGAGGAAGCTCAAGAGGCGATCAAGGCGCTGAACAACACGGTGCC
GGAGGGCGGATCCCAGCCAATCTGGGTACGACTCGCCGAGGAACACGGCA
AGGCCAAGGCGGCCCAGTTTATGGCCCAGATCGGAGGTGGCAATGGTGGC
GGAGGCGGTGGTCCGCCCCACATGGGCCCAGGTGGACCGATGCACCCACC
TCATCACCACAATAATCACCATCACAACAACCACCACAATCCGCATATGC
CGCCGCATCATCATCAGCCGCAGCATCCACACCAGCATCCGCAGCACCAT
CCGCAGCTGCACCACATGCAGCACCACCATCCCAACAACCACAACAACAA
TCACCCCAACAACCACCATCATAACAACAACAACAACAACCACCACAACA
TGGGCGGCCCGCATCCGCACCACATGCAGCAAATGCACCCGATGGGCATG
AACATGGGCATGGGCGTAAACATGGGAATGGGCATGGGCATGGGCATGCC
CATTCACGGAGGCGGCGGTGGTGGTGGTGGCGGCGGCGGTGGAGGCGGTG
GTGGTAACTTCCACCACATGGCGCACAGAGGTAGATCAAATAGAACAACA
CGATCTCAAAAACCGCATCCATATAACCATGCACAGAAATTTATTTAAAA
GCTTTCTAGACCAT

BS17589.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
ssx-RE 1332 CG3056-PE 1..1332 17..1348 6660 100 Plus
ssx-RB 1332 CG3056-PB 1..1332 17..1348 6660 100 Plus
ssx-RD 1458 CG3056-PD 1..1266 17..1282 6330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
ssx-RE 3635 CG3056-RE 161..1494 16..1349 6670 100 Plus
ssx-RB 3055 CG3056-RB 161..1494 16..1349 6670 100 Plus
ssx-RD 2945 CG3056-RD 161..1427 16..1282 6335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1372460..1373116 693..1349 3285 100 Plus
X 23542271 X 1371449..1371774 78..403 1630 100 Plus
X 23542271 X 1372084..1372267 510..693 920 100 Plus
X 23542271 X 1371913..1372025 402..514 565 100 Plus
X 23542271 X 1371307..1371371 16..80 325 100 Plus
X 23542271 X 7084682..7084818 831..695 205 76.6 Minus
X 23542271 X 7085624..7085730 398..292 205 79.4 Minus
Blast to na_te.dros performed 2014-11-27 13:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 550..617 83..150 142 67.6 Plus

BS17589.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:27 Download gff for BS17589.complete
Subject Subject Range Query Range Percent Splice Strand
CG3056-RB 1..1332 17..1348 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:49:57 Download gff for BS17589.complete
Subject Subject Range Query Range Percent Splice Strand
CG3056-RB 171..1516 10..1358 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:43 Download gff for BS17589.complete
Subject Subject Range Query Range Percent Splice Strand
ssx-RB 162..1491 17..1346 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:17 Download gff for BS17589.complete
Subject Subject Range Query Range Percent Splice Strand
CG3056-RB 176..1505 17..1346 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:16 Download gff for BS17589.complete
Subject Subject Range Query Range Percent Splice Strand
ssx-RB 162..1491 17..1346 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:16 Download gff for BS17589.complete
Subject Subject Range Query Range Percent Splice Strand
X 1371308..1371370 17..79 100 -> Plus
X 1371451..1371774 80..403 100 -> Plus
X 1371915..1372022 404..511 100 -> Plus
X 1372086..1372267 512..693 100 -> Plus
X 1372461..1373113 694..1346 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:43 Download gff for BS17589.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1265341..1265403 17..79 100 -> Plus
arm_X 1265484..1265807 80..403 100 -> Plus
arm_X 1265948..1266055 404..511 100 -> Plus
arm_X 1266119..1266300 512..693 100 -> Plus
arm_X 1266494..1267146 694..1346 100   Plus

BS17589.pep Sequence

Translation from 16 to 1347

> BS17589.pep
MSNADKMQDQEHDDEQSSDIEGSGDNVGRDDGTDDDDDSNGNMQQENGDG
GNGGDGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYL
PQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDA
IQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFS
PYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQ
PIWVRLAEEHGKAKAAQFMAQIGGGNGGGGGGPPHMGPGGPMHPPHHHNN
HHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNH
HHNNNNNNHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGMGMGMPIHGGG
GGGGGGGGGGGGGNFHHMAHRGRSNRTTRSQKPHPYNHAQKFI*

BS17589.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
ssx-PE 443 CG3056-PE 1..443 1..443 2519 100 Plus
ssx-PB 443 CG3056-PB 1..443 1..443 2519 100 Plus
ssx-PD 485 CG3056-PD 1..422 1..422 2403 100 Plus
Sxl-PE 314 CG43770-PE 32..281 48..296 786 63.4 Plus
Sxl-PA 314 CG43770-PA 32..281 48..296 786 63.4 Plus