Clone Sequence Records
BS17589.5prime Sequence
804 bp (738 high quality bases) assembled on 2007-05-15
> BS17589.5prime
GAAGTTATCAGTCGACATGTCCAACGCGGATAAGATGCAGGACCAGGAGC
ACGACGACGAGCAGTCCTCCGACATAGAGGGATCCGGCGACAATGTGGGC
CGTGATGACGGCACCGACGATGACGACGACAGCAACGGCAACATGCAGCA
GGAGAATGGAGATGGCGGCAACGGTGGCGACGGCCAGGAGCACTCTGGCG
ACGAGGAGCAACACCACAGCCAGGACAACGAGGGCAACGATAACTCCGCA
GGCCAACAGCAGCAAATGCAGCAAGTGGACCGAACCAGCGCCACCAATCT
GATCATCAATTACTTGCCACAGGACATGACCGACCGCGAACTGTACAACC
TCTTTAGCGGCTGCGGGCCCATCAACACCTGCAAGATAATGCGCGACTTC
AAGACCGGATATAGCTTCGGCTACGGCTTCGTGGACTACAAAACGGAGTC
GGACTCGGAGGACGCCATCCAGAAGCTAAATGGCTTCTATGTGCGCAACA
AGCGATTAAAGGTGTCGTATGCTCGACCGGGTGGGCAGTCCATTAAGGAT
ACGAATTTGTACGTCATCAACCTGTCGCGAAACATCAACGACGACATGCT
CGACCGCATCTTCTCGCCCTATGGCCTGATTGTTCAGCGAAACATCCTGC
GGGATAAGCTCACTGGACGACCGCGCGGCGTTGCTTTTGTGCGTTACAAT
AAGCGCGAGGAAGCTCAAGAGGCGATCAAGGCGCTGAACAACACGGTGCC
GGAGGGCGGATCCCAGCCCATCTGGGTACGACTCGCCGAGGAACACGGCA
AGGC
BS17589.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3056-PA | 1458 | CG3056-RA | 1..788 | 17..804 | 3915 | 99.8 | Plus |
CG3056-PB | 1332 | CG3056-RB | 1..788 | 17..804 | 3915 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssx-RE | 3635 | CG3056-RE | 161..949 | 16..804 | 3930 | 99.9 | Plus |
ssx-RD | 2945 | CG3056-RD | 161..949 | 16..804 | 3930 | 99.9 | Plus |
ssx-RB | 3055 | CG3056-RB | 161..949 | 16..804 | 3930 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:50:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1371449..1371774 | 78..403 | 1630 | 100 | Plus |
X | 23542271 | X | 1372084..1372267 | 510..693 | 920 | 100 | Plus |
X | 23542271 | X | 1371913..1372025 | 402..514 | 565 | 100 | Plus |
X | 23542271 | X | 1372460..1372571 | 693..804 | 545 | 99.1 | Plus |
X | 23542271 | X | 1371307..1371371 | 16..80 | 325 | 100 | Plus |
X | 23542271 | X | 7085624..7085730 | 398..292 | 205 | 79.4 | Minus |
Blast to na_te.dros performed 2015-02-12 10:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 550..617 | 83..150 | 142 | 67.6 | Plus |
BS17589.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:13 Download gff for
BS17589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3056-PB | 1..788 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:21 Download gff for
BS17589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssx-RB | 157..949 | 10..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:36 Download gff for
BS17589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssx-RB | 157..949 | 10..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:36 Download gff for
BS17589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1371303..1371370 | 10..79 | 95 | -> | Plus |
X | 1371451..1371774 | 80..403 | 100 | -> | Plus |
X | 1371915..1372022 | 404..511 | 100 | -> | Plus |
X | 1372086..1372267 | 512..693 | 100 | -> | Plus |
X | 1372461..1372571 | 694..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:21 Download gff for
BS17589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1265336..1265403 | 10..79 | 95 | -> | Plus |
arm_X | 1265484..1265807 | 80..403 | 100 | -> | Plus |
arm_X | 1265948..1266055 | 404..511 | 100 | -> | Plus |
arm_X | 1266119..1266300 | 512..693 | 100 | -> | Plus |
arm_X | 1266494..1266604 | 694..804 | 99 | | Plus |
BS17589.3prime Sequence
322 bp (321 high quality bases) assembled on 2007-05-15
> BS17589.3prime
ATGGTCTAGAAAGCTTTTACCTAAATTTCTGTGCATGGTTATATGGATGC
GGTTTTTGAGATCGTGTTGTTCTATTTGATCTACCTCTGTGCGCCATGTG
GTGGAAGTTACCACCACCGCCTCCACCGCCGCCGCCACCACCACCACCGC
CGCCTCCGTGAATGGGCATGCCCATGCCCATGCCCATTCCCATGTTTACG
CCCATGCCCATGTTCATGCCCATCGGGTGCATTTGCTGCATGTGGTGCGG
ATGCGGGCCGCCCATGTTGTGGTGGTTGTTGTTGTTGTTGTTATGATGGT
GGTTGTTGGGGTGATTGTTGTT
BS17589.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3056-PB | 1332 | CG3056-RB | 1027..1327 | 322..22 | 1505 | 100 | Minus |
CG3056-PA | 1458 | CG3056-RA | 1027..1266 | 322..83 | 1200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssx-RE | 3635 | CG3056-RE | 1188..1488 | 322..22 | 1505 | 100 | Minus |
ssx-RC | 3096 | CG3056-RC | 1229..1529 | 322..22 | 1505 | 100 | Minus |
ssx-RB | 3055 | CG3056-RB | 1188..1488 | 322..22 | 1505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1372810..1373110 | 322..22 | 1505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:59:23 has no hits.
BS17589.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:52 Download gff for
BS17589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3056-PB | 1027..1332 | 17..322 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:29 Download gff for
BS17589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssx-RB | 1188..1497 | 13..322 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:59 Download gff for
BS17589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssx-RB | 1188..1497 | 13..322 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:59 Download gff for
BS17589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1372810..1373119 | 13..322 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:29 Download gff for
BS17589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1266843..1267152 | 13..322 | 99 | | Minus |
BS17589.complete Sequence
1364 bp assembled on 2007-10-17
GenBank Submission: KX802462
> BS17589.complete
GAAGTTATCAGTCGACATGTCCAACGCGGATAAGATGCAGGACCAGGAGC
ACGACGACGAGCAGTCCTCCGACATAGAGGGATCCGGCGACAATGTGGGC
CGTGATGACGGCACCGACGATGACGACGACAGCAACGGCAACATGCAGCA
GGAGAATGGAGATGGCGGCAACGGTGGCGACGGCCAGGAGCACTCTGGCG
ACGAGGAGCAACACCACAGCCAGGACAACGAGGGCAACGATAACTCCGCA
GGCCAACAGCAGCAAATGCAGCAAGTGGACCGAACCAGCGCCACCAATCT
GATCATCAATTACTTGCCACAGGACATGACCGACCGCGAACTGTACAACC
TCTTTAGCGGCTGCGGGCCCATCAACACCTGCAAGATAATGCGCGACTTC
AAGACCGGATATAGCTTCGGCTACGGCTTCGTGGACTACAAAACGGAGTC
GGACTCGGAGGACGCCATCCAGAAGCTAAATGGCTTCTATGTGCGCAACA
AGCGATTAAAGGTGTCGTATGCTCGACCGGGTGGGCAGTCCATTAAGGAT
ACGAATTTGTACGTCATCAACCTGTCGCGAAACATCAACGACGACATGCT
CGACCGCATCTTCTCGCCCTATGGCCTGATTGTTCAGCGAAACATCCTGC
GGGATAAGCTCACTGGACGACCGCGCGGCGTTGCTTTTGTGCGTTACAAT
AAGCGCGAGGAAGCTCAAGAGGCGATCAAGGCGCTGAACAACACGGTGCC
GGAGGGCGGATCCCAGCCAATCTGGGTACGACTCGCCGAGGAACACGGCA
AGGCCAAGGCGGCCCAGTTTATGGCCCAGATCGGAGGTGGCAATGGTGGC
GGAGGCGGTGGTCCGCCCCACATGGGCCCAGGTGGACCGATGCACCCACC
TCATCACCACAATAATCACCATCACAACAACCACCACAATCCGCATATGC
CGCCGCATCATCATCAGCCGCAGCATCCACACCAGCATCCGCAGCACCAT
CCGCAGCTGCACCACATGCAGCACCACCATCCCAACAACCACAACAACAA
TCACCCCAACAACCACCATCATAACAACAACAACAACAACCACCACAACA
TGGGCGGCCCGCATCCGCACCACATGCAGCAAATGCACCCGATGGGCATG
AACATGGGCATGGGCGTAAACATGGGAATGGGCATGGGCATGGGCATGCC
CATTCACGGAGGCGGCGGTGGTGGTGGTGGCGGCGGCGGTGGAGGCGGTG
GTGGTAACTTCCACCACATGGCGCACAGAGGTAGATCAAATAGAACAACA
CGATCTCAAAAACCGCATCCATATAACCATGCACAGAAATTTATTTAAAA
GCTTTCTAGACCAT
BS17589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssx-RE | 1332 | CG3056-PE | 1..1332 | 17..1348 | 6660 | 100 | Plus |
ssx-RB | 1332 | CG3056-PB | 1..1332 | 17..1348 | 6660 | 100 | Plus |
ssx-RD | 1458 | CG3056-PD | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssx-RE | 3635 | CG3056-RE | 161..1494 | 16..1349 | 6670 | 100 | Plus |
ssx-RB | 3055 | CG3056-RB | 161..1494 | 16..1349 | 6670 | 100 | Plus |
ssx-RD | 2945 | CG3056-RD | 161..1427 | 16..1282 | 6335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1372460..1373116 | 693..1349 | 3285 | 100 | Plus |
X | 23542271 | X | 1371449..1371774 | 78..403 | 1630 | 100 | Plus |
X | 23542271 | X | 1372084..1372267 | 510..693 | 920 | 100 | Plus |
X | 23542271 | X | 1371913..1372025 | 402..514 | 565 | 100 | Plus |
X | 23542271 | X | 1371307..1371371 | 16..80 | 325 | 100 | Plus |
X | 23542271 | X | 7084682..7084818 | 831..695 | 205 | 76.6 | Minus |
X | 23542271 | X | 7085624..7085730 | 398..292 | 205 | 79.4 | Minus |
Blast to na_te.dros performed 2014-11-27 13:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 550..617 | 83..150 | 142 | 67.6 | Plus |
BS17589.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:27 Download gff for
BS17589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3056-RB | 1..1332 | 17..1348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:49:57 Download gff for
BS17589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3056-RB | 171..1516 | 10..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:43 Download gff for
BS17589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssx-RB | 162..1491 | 17..1346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:17 Download gff for
BS17589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3056-RB | 176..1505 | 17..1346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:16 Download gff for
BS17589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssx-RB | 162..1491 | 17..1346 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:16 Download gff for
BS17589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1371308..1371370 | 17..79 | 100 | -> | Plus |
X | 1371451..1371774 | 80..403 | 100 | -> | Plus |
X | 1371915..1372022 | 404..511 | 100 | -> | Plus |
X | 1372086..1372267 | 512..693 | 100 | -> | Plus |
X | 1372461..1373113 | 694..1346 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:43 Download gff for
BS17589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1265341..1265403 | 17..79 | 100 | -> | Plus |
arm_X | 1265484..1265807 | 80..403 | 100 | -> | Plus |
arm_X | 1265948..1266055 | 404..511 | 100 | -> | Plus |
arm_X | 1266119..1266300 | 512..693 | 100 | -> | Plus |
arm_X | 1266494..1267146 | 694..1346 | 100 | | Plus |
BS17589.pep Sequence
Translation from 16 to 1347
> BS17589.pep
MSNADKMQDQEHDDEQSSDIEGSGDNVGRDDGTDDDDDSNGNMQQENGDG
GNGGDGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYL
PQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDA
IQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFS
PYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQ
PIWVRLAEEHGKAKAAQFMAQIGGGNGGGGGGPPHMGPGGPMHPPHHHNN
HHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNH
HHNNNNNNHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGMGMGMPIHGGG
GGGGGGGGGGGGGNFHHMAHRGRSNRTTRSQKPHPYNHAQKFI*
BS17589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssx-PE | 443 | CG3056-PE | 1..443 | 1..443 | 2519 | 100 | Plus |
ssx-PB | 443 | CG3056-PB | 1..443 | 1..443 | 2519 | 100 | Plus |
ssx-PD | 485 | CG3056-PD | 1..422 | 1..422 | 2403 | 100 | Plus |
Sxl-PE | 314 | CG43770-PE | 32..281 | 48..296 | 786 | 63.4 | Plus |
Sxl-PA | 314 | CG43770-PA | 32..281 | 48..296 | 786 | 63.4 | Plus |