Clone Sequence Records
BS17590.3prime Sequence
887 bp (817 high quality bases) assembled on 2007-05-15
> BS17590.3prime
ATGGTCTAGAAAGCTTTTACCGAAAGAGTCGCGTGAAGGTTTTCAAGGCT
TGCGAAATGGCTTTCGTTGTGTCCGCTCTCAGAACTGTGCTGCTAAATTC
GTCCAGCTGTTGCTGCGTGGCTGTCACGTAGCCACCGCTGTTCTTTTTGG
GCAGTGCCTCCAGCGCCTGGGCCAGGAAGGGCTGCATCCGCTCGTTGCCC
ACCACCTGCTTCAGTTCGTGGAGCACCTCGGCCACATCCACCAGCATGTA
GGAGTGCAGCTGAAAGACGGATGCCTGGATCAGGTTCATCACCAGAGCAC
CGCCATGCTGACTGGCCAGCTCCACCACCAAGGGACGGCACTCGGTGTTC
CGGCTATGGTTATTCGATCTGCCCCAAACCAACAGGTTGATAAAGAACTT
CATCACAGACGAGTTGGCCTCGCGGTGGTCCAAGGAGCAGGCTATTAGCG
CACACTGGAAGATCGGCGTGATGAGACTGCTCTGGAGCAGCTGGTGGGGA
CAACAGTCCAGGTAACGCGATGCCAAACGGAAGAAGTCATCCACTGTGTC
GGGGTTATTTTTTAGACCGTTCTCCATCTGAAGCAGGCCAAATGTGGGCT
CTATAAATGCCTGAAGCATCTCCAAAAGTCCGCCAATGCACTCGCTGGAC
TTTGCGAACTCGTCCACCAGTATGGAACCCACGTAGAGGAAGCAACTGTG
GTGCTGCACAGAATACAGCACGACCATTTGTTTGATCAGCGGTTCCACCA
GCATCATTGCTTGCTTTCTCACCATCCGAATGCCGTAGCGAATCAGTCGG
CAGGTGCGCTCCATGATACGCAGATCACTCTGGTACTTATCCATCACCCG
CGATATCAGCTGCCAGGCGTCGTTCAGAATAGCTACC
BS17590.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2848-PA | 2799 | Trn-SR-RA | 1929..2795 | 887..21 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trn-SR-RB | 3586 | CG2848-RB | 2038..2908 | 887..17 | 4340 | 99.9 | Minus |
Trn-SR-RA | 3307 | CG2848-RA | 2038..2908 | 887..17 | 4340 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2762279..2763088 | 887..78 | 4050 | 100 | Minus |
2L | 23513712 | 2L | 2763149..2763211 | 79..17 | 300 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:22:25 has no hits.
BS17590.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:54:01 Download gff for
BS17590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2848-PA | 1929..2799 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:21:59 Download gff for
BS17590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trn-SR-RA | 2038..2908 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:25 Download gff for
BS17590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trn-SR-RA | 2038..2908 | 17..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:25 Download gff for
BS17590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2762279..2763088 | 78..887 | 100 | -> | Minus |
2L | 2763151..2763207 | 20..77 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:21:59 Download gff for
BS17590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2762279..2763088 | 78..887 | 100 | -> | Minus |
arm_2L | 2763151..2763207 | 20..77 | 98 | <- | Minus |
BS17590.5prime Sequence
780 bp (779 high quality bases) assembled on 2007-05-15
> BS17590.5prime
GAAGTTATCAGTCGACATGGATACGTACTCGGTGGACGTGGTGTACCAAG
CAATCAGCGCCCTCTTCCAAGGCAACAATCCCAAGGAGCAGGAGAAGGCC
AACAAATGGCTCCAGGACTTCCAGAAGTCGATCTATTCTTGGACGATTGC
GGACGAGCTGCTTCACCAGAAACGAGACCTGCACGCCAACTACTTTGCTG
CGCAGACCATGCGGAACAAGATACAGAACTCCTTCAGCGAACTGCCACCG
CACACGCACGAATCTCTGCGGGATTCACTGATCACACACATAGGCCAGAT
CGACGAGCAGACGGACAATGTGATTGTGACGCAGCTCAGTCTGGCGGTTG
CCGATCTGGCCCTGCTGATGGCCAGCTGGCGGGAGCCGATCAACGATCTT
CTGGTGACACTGGCGCCACATCAGTGCGCCATCTGGCCCCTGCTGGAGGT
GCTCAAGGTGCTTCCCGAGGAAATAGACTCACGGTATCTGCGGCTGGGCG
CCAATCGGCGCGAGGAGGTGCACAAGCAGCTGGACGCCAGCGCAGAGTGT
GTCCTAAAGTTCCTGTGTATGTGCCTACAGCGGGAGGATCTCGACCAGCA
GCGCGTGTGGAATGCGGCGTTGCGCACCTACAGTGCCTGGCTGGTGATCC
ATGCCTTTCCCGTCTCGCACGTGTACAACAACGCCCTCACACAGCTGGCC
TTCCGGTTGCTCTCGCTGCCGGAGACCAGTGGAAAACTGCACGACAATGC
CACCGAATGCGTGTGTGCGCTGCTCTCCTG
BS17590.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2848-PA | 2799 | Trn-SR-RA | 1..764 | 17..780 | 3820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trn-SR-RB | 3586 | CG2848-RB | 110..873 | 17..780 | 3820 | 100 | Plus |
Trn-SR-RA | 3307 | CG2848-RA | 110..873 | 17..780 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2760216..2760866 | 130..780 | 3255 | 100 | Plus |
2L | 23513712 | 2L | 2760033..2760146 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:06:14 has no hits.
BS17590.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:17 Download gff for
BS17590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2848-PA | 1..764 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:59 Download gff for
BS17590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trn-SR-RA | 107..873 | 14..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:37:24 Download gff for
BS17590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trn-SR-RA | 107..873 | 14..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:37:24 Download gff for
BS17590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2760030..2760146 | 14..130 | 99 | -> | Plus |
2L | 2760217..2760866 | 131..780 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:59 Download gff for
BS17590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2760030..2760146 | 14..130 | 99 | -> | Plus |
arm_2L | 2760217..2760866 | 131..780 | 100 | | Plus |
BS17590.complete Sequence
2831 bp assembled on 2008-08-15
GenBank Submission: KX804126
> BS17590.complete
GAAGTTATCAGTCGACATGGATACGTACTCGGTGGACGTGGTGTACCAAG
CAATCAGCGCCCTCTTCCAAGGCAACAATCCCAAGGAGCAGGAGAAGGCC
AACAAATGGCTCCAGGACTTCCAGAAGTCGATCTATTCTTGGACGATTGC
GGACGAGCTGCTTCACCAGAAACGAGACCTGCACGCCAACTACTTTGCTG
CGCAGACCATGCGGAACAAGATACAGAACTCCTTCAGCGAACTGCCACCG
CACACGCACGAATCTCTGCGGGATTCACTGATCACACACATAGGCCAGAT
CGACGAGCAGACGGACAATGTGATTGTGACGCAGCTCAGTCTGGCGGTTG
CCGATCTGGCCCTGCTGATGGCCAGCTGGCGGGAGCCGATCAACGATCTT
CTGGTGACACTGGCGCCACATCAGTGCGCCATCTGGCCCCTGCTGGAGGT
GCTCAAGGTGCTTCCCGAGGAAATAGACTCACGGTATCTGCGGCTGGGCG
CCAATCGGCGCGAGGAGGTGCACAAGCAGCTGGACGCCAGCGCAGAGTGT
GTCCTAAAGTTCCTGTGTATGTGCCTACAGCGGGAGGATCTCGACCAGCA
GCGCGTGTGGAATGCGGCGTTGCGCACCTACAGTGCCTGGCTGGTGATCC
ATGCCTTTCCCGTCTCGCACGTGTACAACAACGCCCTCACACAGCTGGCC
TTCCGGTTGCTCTCGCTGCCGGAGACCAGTGGAAAACTGCACGACAATGC
CACCGAATGCGTGTGTGCGCTGCTCTCCTGCATAAACACACGACAGGATG
GCGCCAGCGATCCGGAGTCCTCTTTCGAGGCACAACTCTTTGGAGCTGTC
TGCATGCTGGAGACTCCCTATCACTTGAGTGTGGCGCACGAGGACACCGA
CAAGACGATCAACTACTGCCGAATTTTCACCTCGTTGTGCGATGCCTTCT
TCTACGATTTATTGGCCGATGCCCAGAAGCCACACTACAGTTTGAAAGGA
CTGGATCTTGTGCTGCTTTGCGTCGGACACTTCGACTACGAGGTGGCCGA
GATCACCTTCCACCTGTGGTACAAACTCTCCGAGGATCTATTCCAGCGCA
ACGAGGATAAGCTGACGGTTCTATTCCGGCCGCACATCGAGCGGCTGATC
AGCGCCCTGTTTCGCCACTCGCAAATGGAGAGCGACCACGACGGGCTCAT
CGAGGAGAACAACAATTTCTTTGACTTTCGACGCAAGGTCTCAGATCTAA
TAAAAGACGTGGCCTTCATAGTGGGATCTGGAGCGTGCTTCAAGCAAATG
TTTCATATCCTGCAAGCTCCAGAAACTACGTGGGAGTCCACAGAGGCAGC
ACTGTTCATTATGCAGAACGTGGCCAAAAATATACTTCCAGATGAGAACG
AAGTGATCCCCAAGGTGGTGGAGGCGATTCTCAATATGTCGGAGCAAACG
CACATAGCAGTTAGGTACACTGCGATTCTACTGATCGGCGAACTGTGCGA
CTGGATTGAGAACCATCCTGAATCGCTGGAGGCAGTCCTAAACTTTTTGC
TGTACGCCCTGCAGCAGAAAAATGGCTTGGCGCCAGCTGCGGCCATTGCA
TTGACTTCCATTTGCTCCGCCTGCCGACAGAAGATGGTGTGCCATATAAG
CGGTCTTGTGGAGATCGCCCGCAGTCTGGACAGCTTTCAAATAAACAACG
ATGTGGCAATAGGATTGCTAAAGGGCATATCGCTTATACTGACACGCCTG
CCACGCGAGCAACTGCAGCCTGCTCTGCGGGAAATCGTCGGCTTCCAGCT
GCAACCACTGGCACAATTGGTGGACAGCACTGGCAGTACTCCTCAAAAGG
GAGAGCGCACCGATCCCGTTTACTGGATAGACCGCGCCTGCGCCATTATC
CGACACACGAATCCAGACGTTCCCGACAACGTGGAGCACCCCACGGTAGC
TATTCTGAACGACGCCTGGCAGCTGATATCGCGGGTGATGGATAAGTACC
AGAGTGATCTGCGTATCATGGAGCGCACCTGCCGACTGATTCGCTACGGC
ATTCGGATGGTGAGAAAGCAAGCAATGATGCTGGTGGAACCGCTGATCAA
ACAAATGGTCGTGCTGTATTCTGTGCAGCACCACAGTTGCTTCCTCTACG
TGGGTTCCATACTGGTGGACGAGTTCGCAAAGTCCAGCGAGTGCATTGGC
GGACTTTTGGAGATGCTTCAGGCATTTATAGAGCCCACATTTGGCCTGCT
TCAGATGGAGAACGGTCTAAAAAATAACCCCGACACAGTGGATGACTTCT
TCCGTTTGGCATCGCGTTACCTGGACTGTTGTCCCCACCAGCTGCTCCAG
AGCAGTCTCATCACGCCGATCTTCCAGTGTGCGCTAATAGCCTGCTCCTT
GGACCACCGCGAGGCCAACTCGTCTGTGATGAAGTTCTTTATCAACCTGT
TGGTTTGGGGCAGATCGAATAACCATAGCCGGAACACCGAGTGCCGTCCC
TTGGTGGTGGAGCTGGCCAGTCAGCATGGCGGTGCTCTGGTGATGAACCT
GATCCAGGCATCCGTCTTTCAGCTGCACTCCTACATGCTGGTGGATGTGG
CCGAGGTGCTCCACGAACTGAAGCAGGTGGTGGGCAACGAGCGGATGCAG
CCCTTCCTGGCCCAGGCGCTGGAGGCACTGCCCAAAAAGAACAGCGGTGG
CTACGTGACAGCCACGCAGCAACAGCTGGACGAATTTAGCAGCACAGTTC
TGAGAGCGGACACAACGAAAGCCATTTCGCAAGCCTTGAAAACCTTCACG
CGACTCTTTCGCTAAAAGCTTTCTAGACCAT
BS17590.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trn-SR-RB | 2799 | CG2848-PB | 1..2799 | 17..2815 | 13995 | 100 | Plus |
Trn-SR-RA | 2799 | CG2848-PA | 1..2799 | 17..2815 | 13995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trn-SR-RB | 3586 | CG2848-RB | 110..2908 | 17..2815 | 13995 | 100 | Plus |
Trn-SR-RA | 3307 | CG2848-RA | 110..2908 | 17..2815 | 13995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2761724..2763088 | 1390..2754 | 6825 | 100 | Plus |
2L | 23513712 | 2L | 2760216..2761309 | 130..1223 | 5470 | 100 | Plus |
2L | 23513712 | 2L | 2761504..2761670 | 1223..1389 | 835 | 100 | Plus |
2L | 23513712 | 2L | 2760033..2760146 | 17..130 | 570 | 100 | Plus |
2L | 23513712 | 2L | 2763149..2763211 | 2753..2815 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:24:32 has no hits.
BS17590.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:25:17 Download gff for
BS17590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trn-SR-RA | 116..2917 | 14..2815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:02 Download gff for
BS17590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trn-SR-RA | 110..2906 | 17..2813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:23 Download gff for
BS17590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trn-SR-RA | 119..2915 | 17..2813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:56 Download gff for
BS17590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trn-SR-RA | 110..2906 | 17..2813 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:56 Download gff for
BS17590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2760033..2760146 | 17..130 | 100 | -> | Plus |
2L | 2760217..2761308 | 131..1222 | 100 | -> | Plus |
2L | 2761504..2761670 | 1223..1389 | 100 | -> | Plus |
2L | 2761724..2763088 | 1390..2754 | 100 | -> | Plus |
2L | 2763151..2763209 | 2755..2813 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:02 Download gff for
BS17590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2760033..2760146 | 17..130 | 100 | -> | Plus |
arm_2L | 2760217..2761308 | 131..1222 | 100 | -> | Plus |
arm_2L | 2761504..2761670 | 1223..1389 | 100 | -> | Plus |
arm_2L | 2761724..2763088 | 1390..2754 | 100 | -> | Plus |
arm_2L | 2763151..2763209 | 2755..2813 | 100 | | Plus |
BS17590.pep Sequence
Translation from 16 to 2814
> BS17590.pep
MDTYSVDVVYQAISALFQGNNPKEQEKANKWLQDFQKSIYSWTIADELLH
QKRDLHANYFAAQTMRNKIQNSFSELPPHTHESLRDSLITHIGQIDEQTD
NVIVTQLSLAVADLALLMASWREPINDLLVTLAPHQCAIWPLLEVLKVLP
EEIDSRYLRLGANRREEVHKQLDASAECVLKFLCMCLQREDLDQQRVWNA
ALRTYSAWLVIHAFPVSHVYNNALTQLAFRLLSLPETSGKLHDNATECVC
ALLSCINTRQDGASDPESSFEAQLFGAVCMLETPYHLSVAHEDTDKTINY
CRIFTSLCDAFFYDLLADAQKPHYSLKGLDLVLLCVGHFDYEVAEITFHL
WYKLSEDLFQRNEDKLTVLFRPHIERLISALFRHSQMESDHDGLIEENNN
FFDFRRKVSDLIKDVAFIVGSGACFKQMFHILQAPETTWESTEAALFIMQ
NVAKNILPDENEVIPKVVEAILNMSEQTHIAVRYTAILLIGELCDWIENH
PESLEAVLNFLLYALQQKNGLAPAAAIALTSICSACRQKMVCHISGLVEI
ARSLDSFQINNDVAIGLLKGISLILTRLPREQLQPALREIVGFQLQPLAQ
LVDSTGSTPQKGERTDPVYWIDRACAIIRHTNPDVPDNVEHPTVAILNDA
WQLISRVMDKYQSDLRIMERTCRLIRYGIRMVRKQAMMLVEPLIKQMVVL
YSVQHHSCFLYVGSILVDEFAKSSECIGGLLEMLQAFIEPTFGLLQMENG
LKNNPDTVDDFFRLASRYLDCCPHQLLQSSLITPIFQCALIACSLDHREA
NSSVMKFFINLLVWGRSNNHSRNTECRPLVVELASQHGGALVMNLIQASV
FQLHSYMLVDVAEVLHELKQVVGNERMQPFLAQALEALPKKNSGGYVTAT
QQQLDEFSSTVLRADTTKAISQALKTFTRLFR*
BS17590.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trn-SR-PB | 932 | CG2848-PB | 1..932 | 1..932 | 4829 | 100 | Plus |
Trn-SR-PA | 932 | CG2848-PA | 1..932 | 1..932 | 4829 | 100 | Plus |
CG10950-PA | 586 | CG10950-PA | 5..566 | 4..594 | 401 | 23.3 | Plus |
cdm-PB | 971 | CG7212-PB | 16..868 | 17..825 | 361 | 19.5 | Plus |
cdm-PA | 971 | CG7212-PA | 16..868 | 17..825 | 361 | 19.5 | Plus |