Clone BS17590 Report

Search the DGRC for BS17590

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptTrn-SR-RA
Protein status:BS17590.pep: full length peptide match
Sequenced Size:2831

Clone Sequence Records

BS17590.3prime Sequence

887 bp (817 high quality bases) assembled on 2007-05-15

> BS17590.3prime
ATGGTCTAGAAAGCTTTTACCGAAAGAGTCGCGTGAAGGTTTTCAAGGCT
TGCGAAATGGCTTTCGTTGTGTCCGCTCTCAGAACTGTGCTGCTAAATTC
GTCCAGCTGTTGCTGCGTGGCTGTCACGTAGCCACCGCTGTTCTTTTTGG
GCAGTGCCTCCAGCGCCTGGGCCAGGAAGGGCTGCATCCGCTCGTTGCCC
ACCACCTGCTTCAGTTCGTGGAGCACCTCGGCCACATCCACCAGCATGTA
GGAGTGCAGCTGAAAGACGGATGCCTGGATCAGGTTCATCACCAGAGCAC
CGCCATGCTGACTGGCCAGCTCCACCACCAAGGGACGGCACTCGGTGTTC
CGGCTATGGTTATTCGATCTGCCCCAAACCAACAGGTTGATAAAGAACTT
CATCACAGACGAGTTGGCCTCGCGGTGGTCCAAGGAGCAGGCTATTAGCG
CACACTGGAAGATCGGCGTGATGAGACTGCTCTGGAGCAGCTGGTGGGGA
CAACAGTCCAGGTAACGCGATGCCAAACGGAAGAAGTCATCCACTGTGTC
GGGGTTATTTTTTAGACCGTTCTCCATCTGAAGCAGGCCAAATGTGGGCT
CTATAAATGCCTGAAGCATCTCCAAAAGTCCGCCAATGCACTCGCTGGAC
TTTGCGAACTCGTCCACCAGTATGGAACCCACGTAGAGGAAGCAACTGTG
GTGCTGCACAGAATACAGCACGACCATTTGTTTGATCAGCGGTTCCACCA
GCATCATTGCTTGCTTTCTCACCATCCGAATGCCGTAGCGAATCAGTCGG
CAGGTGCGCTCCATGATACGCAGATCACTCTGGTACTTATCCATCACCCG
CGATATCAGCTGCCAGGCGTCGTTCAGAATAGCTACC

BS17590.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2848-PA 2799 Trn-SR-RA 1929..2795 887..21 4335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Trn-SR-RB 3586 CG2848-RB 2038..2908 887..17 4340 99.9 Minus
Trn-SR-RA 3307 CG2848-RA 2038..2908 887..17 4340 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2762279..2763088 887..78 4050 100 Minus
2L 23513712 2L 2763149..2763211 79..17 300 98.4 Minus
Blast to na_te.dros performed on 2015-02-10 15:22:25 has no hits.

BS17590.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:54:01 Download gff for BS17590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2848-PA 1929..2799 17..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:21:59 Download gff for BS17590.3prime
Subject Subject Range Query Range Percent Splice Strand
Trn-SR-RA 2038..2908 17..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:25 Download gff for BS17590.3prime
Subject Subject Range Query Range Percent Splice Strand
Trn-SR-RA 2038..2908 17..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:25 Download gff for BS17590.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2762279..2763088 78..887 100 -> Minus
2L 2763151..2763207 20..77 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:21:59 Download gff for BS17590.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2762279..2763088 78..887 100 -> Minus
arm_2L 2763151..2763207 20..77 98 <- Minus

BS17590.5prime Sequence

780 bp (779 high quality bases) assembled on 2007-05-15

> BS17590.5prime
GAAGTTATCAGTCGACATGGATACGTACTCGGTGGACGTGGTGTACCAAG
CAATCAGCGCCCTCTTCCAAGGCAACAATCCCAAGGAGCAGGAGAAGGCC
AACAAATGGCTCCAGGACTTCCAGAAGTCGATCTATTCTTGGACGATTGC
GGACGAGCTGCTTCACCAGAAACGAGACCTGCACGCCAACTACTTTGCTG
CGCAGACCATGCGGAACAAGATACAGAACTCCTTCAGCGAACTGCCACCG
CACACGCACGAATCTCTGCGGGATTCACTGATCACACACATAGGCCAGAT
CGACGAGCAGACGGACAATGTGATTGTGACGCAGCTCAGTCTGGCGGTTG
CCGATCTGGCCCTGCTGATGGCCAGCTGGCGGGAGCCGATCAACGATCTT
CTGGTGACACTGGCGCCACATCAGTGCGCCATCTGGCCCCTGCTGGAGGT
GCTCAAGGTGCTTCCCGAGGAAATAGACTCACGGTATCTGCGGCTGGGCG
CCAATCGGCGCGAGGAGGTGCACAAGCAGCTGGACGCCAGCGCAGAGTGT
GTCCTAAAGTTCCTGTGTATGTGCCTACAGCGGGAGGATCTCGACCAGCA
GCGCGTGTGGAATGCGGCGTTGCGCACCTACAGTGCCTGGCTGGTGATCC
ATGCCTTTCCCGTCTCGCACGTGTACAACAACGCCCTCACACAGCTGGCC
TTCCGGTTGCTCTCGCTGCCGGAGACCAGTGGAAAACTGCACGACAATGC
CACCGAATGCGTGTGTGCGCTGCTCTCCTG

BS17590.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2848-PA 2799 Trn-SR-RA 1..764 17..780 3820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
Trn-SR-RB 3586 CG2848-RB 110..873 17..780 3820 100 Plus
Trn-SR-RA 3307 CG2848-RA 110..873 17..780 3820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2760216..2760866 130..780 3255 100 Plus
2L 23513712 2L 2760033..2760146 17..130 570 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:06:14 has no hits.

BS17590.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:17 Download gff for BS17590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2848-PA 1..764 17..780 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:59 Download gff for BS17590.5prime
Subject Subject Range Query Range Percent Splice Strand
Trn-SR-RA 107..873 14..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:37:24 Download gff for BS17590.5prime
Subject Subject Range Query Range Percent Splice Strand
Trn-SR-RA 107..873 14..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:37:24 Download gff for BS17590.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2760030..2760146 14..130 99 -> Plus
2L 2760217..2760866 131..780 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:59 Download gff for BS17590.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2760030..2760146 14..130 99 -> Plus
arm_2L 2760217..2760866 131..780 100   Plus

BS17590.complete Sequence

2831 bp assembled on 2008-08-15

GenBank Submission: KX804126

> BS17590.complete
GAAGTTATCAGTCGACATGGATACGTACTCGGTGGACGTGGTGTACCAAG
CAATCAGCGCCCTCTTCCAAGGCAACAATCCCAAGGAGCAGGAGAAGGCC
AACAAATGGCTCCAGGACTTCCAGAAGTCGATCTATTCTTGGACGATTGC
GGACGAGCTGCTTCACCAGAAACGAGACCTGCACGCCAACTACTTTGCTG
CGCAGACCATGCGGAACAAGATACAGAACTCCTTCAGCGAACTGCCACCG
CACACGCACGAATCTCTGCGGGATTCACTGATCACACACATAGGCCAGAT
CGACGAGCAGACGGACAATGTGATTGTGACGCAGCTCAGTCTGGCGGTTG
CCGATCTGGCCCTGCTGATGGCCAGCTGGCGGGAGCCGATCAACGATCTT
CTGGTGACACTGGCGCCACATCAGTGCGCCATCTGGCCCCTGCTGGAGGT
GCTCAAGGTGCTTCCCGAGGAAATAGACTCACGGTATCTGCGGCTGGGCG
CCAATCGGCGCGAGGAGGTGCACAAGCAGCTGGACGCCAGCGCAGAGTGT
GTCCTAAAGTTCCTGTGTATGTGCCTACAGCGGGAGGATCTCGACCAGCA
GCGCGTGTGGAATGCGGCGTTGCGCACCTACAGTGCCTGGCTGGTGATCC
ATGCCTTTCCCGTCTCGCACGTGTACAACAACGCCCTCACACAGCTGGCC
TTCCGGTTGCTCTCGCTGCCGGAGACCAGTGGAAAACTGCACGACAATGC
CACCGAATGCGTGTGTGCGCTGCTCTCCTGCATAAACACACGACAGGATG
GCGCCAGCGATCCGGAGTCCTCTTTCGAGGCACAACTCTTTGGAGCTGTC
TGCATGCTGGAGACTCCCTATCACTTGAGTGTGGCGCACGAGGACACCGA
CAAGACGATCAACTACTGCCGAATTTTCACCTCGTTGTGCGATGCCTTCT
TCTACGATTTATTGGCCGATGCCCAGAAGCCACACTACAGTTTGAAAGGA
CTGGATCTTGTGCTGCTTTGCGTCGGACACTTCGACTACGAGGTGGCCGA
GATCACCTTCCACCTGTGGTACAAACTCTCCGAGGATCTATTCCAGCGCA
ACGAGGATAAGCTGACGGTTCTATTCCGGCCGCACATCGAGCGGCTGATC
AGCGCCCTGTTTCGCCACTCGCAAATGGAGAGCGACCACGACGGGCTCAT
CGAGGAGAACAACAATTTCTTTGACTTTCGACGCAAGGTCTCAGATCTAA
TAAAAGACGTGGCCTTCATAGTGGGATCTGGAGCGTGCTTCAAGCAAATG
TTTCATATCCTGCAAGCTCCAGAAACTACGTGGGAGTCCACAGAGGCAGC
ACTGTTCATTATGCAGAACGTGGCCAAAAATATACTTCCAGATGAGAACG
AAGTGATCCCCAAGGTGGTGGAGGCGATTCTCAATATGTCGGAGCAAACG
CACATAGCAGTTAGGTACACTGCGATTCTACTGATCGGCGAACTGTGCGA
CTGGATTGAGAACCATCCTGAATCGCTGGAGGCAGTCCTAAACTTTTTGC
TGTACGCCCTGCAGCAGAAAAATGGCTTGGCGCCAGCTGCGGCCATTGCA
TTGACTTCCATTTGCTCCGCCTGCCGACAGAAGATGGTGTGCCATATAAG
CGGTCTTGTGGAGATCGCCCGCAGTCTGGACAGCTTTCAAATAAACAACG
ATGTGGCAATAGGATTGCTAAAGGGCATATCGCTTATACTGACACGCCTG
CCACGCGAGCAACTGCAGCCTGCTCTGCGGGAAATCGTCGGCTTCCAGCT
GCAACCACTGGCACAATTGGTGGACAGCACTGGCAGTACTCCTCAAAAGG
GAGAGCGCACCGATCCCGTTTACTGGATAGACCGCGCCTGCGCCATTATC
CGACACACGAATCCAGACGTTCCCGACAACGTGGAGCACCCCACGGTAGC
TATTCTGAACGACGCCTGGCAGCTGATATCGCGGGTGATGGATAAGTACC
AGAGTGATCTGCGTATCATGGAGCGCACCTGCCGACTGATTCGCTACGGC
ATTCGGATGGTGAGAAAGCAAGCAATGATGCTGGTGGAACCGCTGATCAA
ACAAATGGTCGTGCTGTATTCTGTGCAGCACCACAGTTGCTTCCTCTACG
TGGGTTCCATACTGGTGGACGAGTTCGCAAAGTCCAGCGAGTGCATTGGC
GGACTTTTGGAGATGCTTCAGGCATTTATAGAGCCCACATTTGGCCTGCT
TCAGATGGAGAACGGTCTAAAAAATAACCCCGACACAGTGGATGACTTCT
TCCGTTTGGCATCGCGTTACCTGGACTGTTGTCCCCACCAGCTGCTCCAG
AGCAGTCTCATCACGCCGATCTTCCAGTGTGCGCTAATAGCCTGCTCCTT
GGACCACCGCGAGGCCAACTCGTCTGTGATGAAGTTCTTTATCAACCTGT
TGGTTTGGGGCAGATCGAATAACCATAGCCGGAACACCGAGTGCCGTCCC
TTGGTGGTGGAGCTGGCCAGTCAGCATGGCGGTGCTCTGGTGATGAACCT
GATCCAGGCATCCGTCTTTCAGCTGCACTCCTACATGCTGGTGGATGTGG
CCGAGGTGCTCCACGAACTGAAGCAGGTGGTGGGCAACGAGCGGATGCAG
CCCTTCCTGGCCCAGGCGCTGGAGGCACTGCCCAAAAAGAACAGCGGTGG
CTACGTGACAGCCACGCAGCAACAGCTGGACGAATTTAGCAGCACAGTTC
TGAGAGCGGACACAACGAAAGCCATTTCGCAAGCCTTGAAAACCTTCACG
CGACTCTTTCGCTAAAAGCTTTCTAGACCAT

BS17590.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
Trn-SR-RB 2799 CG2848-PB 1..2799 17..2815 13995 100 Plus
Trn-SR-RA 2799 CG2848-PA 1..2799 17..2815 13995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
Trn-SR-RB 3586 CG2848-RB 110..2908 17..2815 13995 100 Plus
Trn-SR-RA 3307 CG2848-RA 110..2908 17..2815 13995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2761724..2763088 1390..2754 6825 100 Plus
2L 23513712 2L 2760216..2761309 130..1223 5470 100 Plus
2L 23513712 2L 2761504..2761670 1223..1389 835 100 Plus
2L 23513712 2L 2760033..2760146 17..130 570 100 Plus
2L 23513712 2L 2763149..2763211 2753..2815 315 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:24:32 has no hits.

BS17590.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:25:17 Download gff for BS17590.complete
Subject Subject Range Query Range Percent Splice Strand
Trn-SR-RA 116..2917 14..2815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:02 Download gff for BS17590.complete
Subject Subject Range Query Range Percent Splice Strand
Trn-SR-RA 110..2906 17..2813 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:23 Download gff for BS17590.complete
Subject Subject Range Query Range Percent Splice Strand
Trn-SR-RA 119..2915 17..2813 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:56 Download gff for BS17590.complete
Subject Subject Range Query Range Percent Splice Strand
Trn-SR-RA 110..2906 17..2813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:56 Download gff for BS17590.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2760033..2760146 17..130 100 -> Plus
2L 2760217..2761308 131..1222 100 -> Plus
2L 2761504..2761670 1223..1389 100 -> Plus
2L 2761724..2763088 1390..2754 100 -> Plus
2L 2763151..2763209 2755..2813 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:02 Download gff for BS17590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2760033..2760146 17..130 100 -> Plus
arm_2L 2760217..2761308 131..1222 100 -> Plus
arm_2L 2761504..2761670 1223..1389 100 -> Plus
arm_2L 2761724..2763088 1390..2754 100 -> Plus
arm_2L 2763151..2763209 2755..2813 100   Plus

BS17590.pep Sequence

Translation from 16 to 2814

> BS17590.pep
MDTYSVDVVYQAISALFQGNNPKEQEKANKWLQDFQKSIYSWTIADELLH
QKRDLHANYFAAQTMRNKIQNSFSELPPHTHESLRDSLITHIGQIDEQTD
NVIVTQLSLAVADLALLMASWREPINDLLVTLAPHQCAIWPLLEVLKVLP
EEIDSRYLRLGANRREEVHKQLDASAECVLKFLCMCLQREDLDQQRVWNA
ALRTYSAWLVIHAFPVSHVYNNALTQLAFRLLSLPETSGKLHDNATECVC
ALLSCINTRQDGASDPESSFEAQLFGAVCMLETPYHLSVAHEDTDKTINY
CRIFTSLCDAFFYDLLADAQKPHYSLKGLDLVLLCVGHFDYEVAEITFHL
WYKLSEDLFQRNEDKLTVLFRPHIERLISALFRHSQMESDHDGLIEENNN
FFDFRRKVSDLIKDVAFIVGSGACFKQMFHILQAPETTWESTEAALFIMQ
NVAKNILPDENEVIPKVVEAILNMSEQTHIAVRYTAILLIGELCDWIENH
PESLEAVLNFLLYALQQKNGLAPAAAIALTSICSACRQKMVCHISGLVEI
ARSLDSFQINNDVAIGLLKGISLILTRLPREQLQPALREIVGFQLQPLAQ
LVDSTGSTPQKGERTDPVYWIDRACAIIRHTNPDVPDNVEHPTVAILNDA
WQLISRVMDKYQSDLRIMERTCRLIRYGIRMVRKQAMMLVEPLIKQMVVL
YSVQHHSCFLYVGSILVDEFAKSSECIGGLLEMLQAFIEPTFGLLQMENG
LKNNPDTVDDFFRLASRYLDCCPHQLLQSSLITPIFQCALIACSLDHREA
NSSVMKFFINLLVWGRSNNHSRNTECRPLVVELASQHGGALVMNLIQASV
FQLHSYMLVDVAEVLHELKQVVGNERMQPFLAQALEALPKKNSGGYVTAT
QQQLDEFSSTVLRADTTKAISQALKTFTRLFR*

BS17590.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Trn-SR-PB 932 CG2848-PB 1..932 1..932 4829 100 Plus
Trn-SR-PA 932 CG2848-PA 1..932 1..932 4829 100 Plus
CG10950-PA 586 CG10950-PA 5..566 4..594 401 23.3 Plus
cdm-PB 971 CG7212-PB 16..868 17..825 361 19.5 Plus
cdm-PA 971 CG7212-PA 16..868 17..825 361 19.5 Plus