Clone BS17592 Report

Search the DGRC for BS17592

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG2875-RA
Protein status:BS17592.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17592.3prime Sequence

832 bp (806 high quality bases) assembled on 2007-05-15

> BS17592.3prime
ATGGTCTAGAAAGCTTCTAGATGAGGTCCCAGTATTTGGTCACGAATTGG
TTTTTAGGCAAAGCCAAATTGGTAGGACGTTCGTAGTTCAGAGCAAATTG
TTTGGCCTTCGACTGTAATTCGTCGTCGAAAATATTGCATTCCTTTCTGT
CCAAGAGGGGTGCTAAGTCGAATTCCATTACGGGCAGCGATGAGTTAATA
AACCGTGCCGCATTGGCCACCTCTGGTACAACGTGTTTCTGCAGCAACGT
AATTTCCCACAGCGAACTGTTTATGGCCTCCGATTTGACGGGATCCGTTT
CTGTTTGATTGTAAGGATCGCTGACCTCATCGACTGCATGGCTGGCGCGA
ATCAATTTCTGCAATCCAGTATGTCTCAATAGCAGATTGCAAACGAATCG
AATCATAATAACAGCATCTTCGGTCGGCGATTGAAGGGCCAGGCGAGCGA
GACGCTTAACGAATGCCGCCACCAGATTCTCGGGCAAATGGGTGGAGGTC
AGAAAGATATCGGCCAAGTAAAACAGGCGTGCCTTGTACTTGTTGTGGAA
CATCCGTGGATAGAACATATTGTACAGCTTCTCATACACATCCGGATAGG
TGATATTCTGCTTTTGCATAAGCGTAAAGATTCCCTGAAGAGCCAGCAAG
GCAATGGGGCCATCAAACTGATGGAGGGAGTCCATGAGAAAGTCGGTCAG
CTGGATGGGATCGTTCAGGTGGTTGATTACGCGCTCCAGAAGCACCACAA
GTATTTGACGATGCAGTTTCTCGTCCACTTCGTTGCCCTTTGCCATAATA
GTCGCCCAGAGATTATTCAGTCTTTTGCGATT

BS17592.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-PA 1494 CG2875-RA 679..1494 832..17 4080 100 Minus
CG2875-PB 1491 CG2875-RB 676..1491 832..17 4080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-RC 1975 CG2875-RC 793..1609 832..16 4085 100 Minus
CG2875-RB 1710 CG2875-RB 793..1609 832..16 4085 100 Minus
CG2875-RA 1713 CG2875-RA 796..1612 832..16 4085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3572003..3572533 134..664 2655 100 Plus
X 23542271 X 3572595..3572763 664..832 845 100 Plus
X 23542271 X 3571822..3571939 16..133 590 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:54:46 has no hits.

BS17592.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:28 Download gff for BS17592.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2875-PB 676..1491 17..832 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:57 Download gff for BS17592.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 796..1614 11..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:53 Download gff for BS17592.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 796..1614 11..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:53 Download gff for BS17592.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3571820..3571939 11..133 97 <- Plus
X 3572003..3572532 134..663 100 <- Plus
X 3572595..3572763 664..832 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:57 Download gff for BS17592.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3465853..3465972 11..133 97 <- Plus
arm_X 3466036..3466565 134..663 100 <- Plus
arm_X 3466628..3466796 664..832 100   Plus

BS17592.5prime Sequence

892 bp (752 high quality bases) assembled on 2007-05-15

> BS17592.5prime
GAAGTTATCAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACA
CCGGCAAGTCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTG
CTAAATGCCGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATT
GCTGAAGAATACGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACAC
TCGAGGTGATATTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACC
GAAAAGCAGGGTCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCT
TCTCATCGAGAATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAG
TGTGCATGCAGCTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAAC
AAGGGTTGGCCCACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAA
TAGCGATACAACGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCA
AAAATCTCGATGTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTG
CCCGATGAAGACTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATC
CATTGTAAACCTCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATT
ACCACGTGGAAAGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGC
AAAAGACTGAATAATCTCTGGGCGACTATTATGGCAAAGGGCAACGAAGT
GGACGAGAAACTGCATCGTCAAATACTTGTGGTGCTTCTGGAGCGCGTAA
TCAACCACCTGAACGATCCCATCCAGCTGACCGACTTTCTCATGGACTCC
CTCCATCAGTTTGATGGCCCCATTGCTTGCTGGCTCTTCAGG

BS17592.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-PA 1494 CG2875-RA 1..860 17..876 4300 100 Plus
CG2875-PB 1491 CG2875-RB 138..857 157..876 3600 100 Plus
CG2875-PB 1491 CG2875-RB 1..140 17..156 700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-RA 1713 CG2875-RA 118..994 17..892 4360 99.9 Plus
CG2875-RC 1975 CG2875-RC 118..991 17..892 4305 99.5 Plus
CG2875-RB 1710 CG2875-RB 118..991 17..892 4305 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3572595..3573304 863..154 3550 100 Minus
X 23542271 X 3573368..3573505 154..17 690 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:45:40 has no hits.

BS17592.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:25 Download gff for BS17592.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2875-PA 1..877 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:44 Download gff for BS17592.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 118..994 17..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:21:04 Download gff for BS17592.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 118..994 17..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:21:04 Download gff for BS17592.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3572503..3572532 864..892 96 <- Minus
X 3572595..3573303 155..863 100 <- Minus
X 3573368..3573505 17..154 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:44 Download gff for BS17592.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3466536..3466565 864..892 96 <- Minus
arm_X 3466628..3467336 155..863 100 <- Minus
arm_X 3467401..3467538 17..154 100   Minus

BS17592.complete Sequence

1526 bp assembled on 2007-06-21

GenBank Submission: KX800249

> BS17592.complete
GAAGTTATCAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACA
CCGGCAAGTCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTG
CTAAATGCCGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATT
GCTGAAGAATACGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACAC
TCGAGGTGATATTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACC
GAAAAGCAGGGTCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCT
TCTCATCGAGAATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAG
TGTGCATGCAGCTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAAC
AAGGGTTGGCCCACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAA
TAGCGATACAACGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCA
AAAATCTCGATGTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTG
CCCGATGAAGACTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATC
CATTGTAAACCTCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATT
ACCACGTGGAAAGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGC
AAAAGACTGAATAATCTCTGGGCGACTATTATGGCAAAGGGCAACGAAGT
GGACGAGAAACTGCATCGTCAAATACTTGTGGTGCTTCTGGAGCGCGTAA
TCAACCACCTGAACGATCCCATCCAGCTGACCGACTTTCTCATGGACTCC
CTCCATCAGTTTGATGGCCCCATTGCCTTGCTGGCTCTTCAGGGAATCTT
TACGCTTATGCAAAAGCAGAATATCACCTATCCGGATGTGTATGAGAAGC
TGTACAATATGTTCTATCCACGGATGTTCCACAACAAGTACAAGGCACGC
CTGTTTTACTTGGCCGATATCTTTCTGACCTCCACCCATTTGCCCGAGAA
TCTGGTGGCGGCATTCGTTAAGCGTCTCGCTCGCCTGGCCCTTCAATCGC
CGACCGAAGATGCTGTTATTATGATTCGATTCGTTTGCAATCTGCTATTG
AGACATACTGGATTGCAGAAATTGATTCGCGCCAGCCATGCAGTCGATGA
GGTCAGCGATCCTTACAATCAAACAGAAACGGATCCCGTCAAATCGGAGG
CCATAAACAGTTCGCTGTGGGAAATTACGTTGCTGCAGAAACACGTTGTA
CCAGAGGTGGCCAATGCGGCACGGTTTATTAACTCATCGCTGCCCGTAAT
GGAATTCGACTTAGCACCCCTCTTGGACAGAAAGGAATGCAATATTTTCG
ACGACGAATTACAGTCGAAGGCCAAACAATTTGCTCTGAACTACGAACGT
CCTACCAATTTGGCTTTGCCTAAAAACCAATTCGTGACCAAATACTGGGA
CCTCATCTAGAAGCTTTCTAGACCAT

BS17592.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-RA 1494 CG2875-PA 1..1494 17..1510 7470 100 Plus
CG2875-RC 1491 CG2875-PC 1..1491 17..1510 7390 99.8 Plus
CG2875-RB 1491 CG2875-PB 1..1491 17..1510 7390 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-RA 1713 CG2875-RA 118..1612 17..1511 7475 100 Plus
CG2875-RC 1975 CG2875-RC 118..1609 17..1511 7395 99.8 Plus
CG2875-RB 1710 CG2875-RB 118..1609 17..1511 7395 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3572595..3573304 863..154 3550 100 Minus
X 23542271 X 3572003..3572533 1393..863 2655 100 Minus
X 23542271 X 3573368..3573505 154..17 690 100 Minus
X 23542271 X 3571822..3571939 1511..1394 590 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:30:44 has no hits.

BS17592.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:20 Download gff for BS17592.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 1..1494 17..1510 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:59:05 Download gff for BS17592.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 116..1612 17..1516 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:10 Download gff for BS17592.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 118..1611 17..1510 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:20 Download gff for BS17592.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 116..1612 17..1516 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:19 Download gff for BS17592.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 118..1611 17..1510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:19 Download gff for BS17592.complete
Subject Subject Range Query Range Percent Splice Strand
X 3572003..3572532 864..1393 100 <- Minus
X 3571823..3571939 1394..1510 100 <- Minus
X 3572595..3573303 155..863 100 <- Minus
X 3573368..3573505 17..154 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:10 Download gff for BS17592.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3465856..3465972 1394..1510 100 <- Minus
arm_X 3466036..3466565 864..1393 100 <- Minus
arm_X 3466628..3467336 155..863 100 <- Minus
arm_X 3467401..3467538 17..154 100   Minus

BS17592.pep Sequence

Translation from 16 to 1509

> BS17592.pep
MKPLTVKVNDDTGKSLAKKKLQSKANSLLNAEQVDIKTLKGFVQLLKNTP
DNMPAGEVMNTLEVIFKNLLKRKAIDGTEKQGLKIKKLYEETWLLLIENL
LVDSQCSVAVKVCMQLIKVEAKHPIAPNKGWPTYWIRGMLETLINSDTTP
TTALANYGKYCKNLDVLEITLTQLKSLVPDEDFKDSPIKAMNFLSIVNLL
DMGKSVLSTADYHVESAKKQTFNYELNRKRLNNLWATIMAKGNEVDEKLH
RQILVVLLERVINHLNDPIQLTDFLMDSLHQFDGPIALLALQGIFTLMQK
QNITYPDVYEKLYNMFYPRMFHNKYKARLFYLADIFLTSTHLPENLVAAF
VKRLARLALQSPTEDAVIMIRFVCNLLLRHTGLQKLIRASHAVDEVSDPY
NQTETDPVKSEAINSSLWEITLLQKHVVPEVANAARFINSSLPVMEFDLA
PLLDRKECNIFDDELQSKAKQFALNYERPTNLALPKNQFVTKYWDLI*

BS17592.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-PA 497 CG2875-PA 1..497 1..497 2550 100 Plus
CG2875-PC 496 CG2875-PC 1..496 1..497 2533 99.8 Plus
CG2875-PB 496 CG2875-PB 1..496 1..497 2533 99.8 Plus