Clone Sequence Records
BS17592.3prime Sequence
832 bp (806 high quality bases) assembled on 2007-05-15
> BS17592.3prime
ATGGTCTAGAAAGCTTCTAGATGAGGTCCCAGTATTTGGTCACGAATTGG
TTTTTAGGCAAAGCCAAATTGGTAGGACGTTCGTAGTTCAGAGCAAATTG
TTTGGCCTTCGACTGTAATTCGTCGTCGAAAATATTGCATTCCTTTCTGT
CCAAGAGGGGTGCTAAGTCGAATTCCATTACGGGCAGCGATGAGTTAATA
AACCGTGCCGCATTGGCCACCTCTGGTACAACGTGTTTCTGCAGCAACGT
AATTTCCCACAGCGAACTGTTTATGGCCTCCGATTTGACGGGATCCGTTT
CTGTTTGATTGTAAGGATCGCTGACCTCATCGACTGCATGGCTGGCGCGA
ATCAATTTCTGCAATCCAGTATGTCTCAATAGCAGATTGCAAACGAATCG
AATCATAATAACAGCATCTTCGGTCGGCGATTGAAGGGCCAGGCGAGCGA
GACGCTTAACGAATGCCGCCACCAGATTCTCGGGCAAATGGGTGGAGGTC
AGAAAGATATCGGCCAAGTAAAACAGGCGTGCCTTGTACTTGTTGTGGAA
CATCCGTGGATAGAACATATTGTACAGCTTCTCATACACATCCGGATAGG
TGATATTCTGCTTTTGCATAAGCGTAAAGATTCCCTGAAGAGCCAGCAAG
GCAATGGGGCCATCAAACTGATGGAGGGAGTCCATGAGAAAGTCGGTCAG
CTGGATGGGATCGTTCAGGTGGTTGATTACGCGCTCCAGAAGCACCACAA
GTATTTGACGATGCAGTTTCTCGTCCACTTCGTTGCCCTTTGCCATAATA
GTCGCCCAGAGATTATTCAGTCTTTTGCGATT
BS17592.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-PA | 1494 | CG2875-RA | 679..1494 | 832..17 | 4080 | 100 | Minus |
CG2875-PB | 1491 | CG2875-RB | 676..1491 | 832..17 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-RC | 1975 | CG2875-RC | 793..1609 | 832..16 | 4085 | 100 | Minus |
CG2875-RB | 1710 | CG2875-RB | 793..1609 | 832..16 | 4085 | 100 | Minus |
CG2875-RA | 1713 | CG2875-RA | 796..1612 | 832..16 | 4085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3572003..3572533 | 134..664 | 2655 | 100 | Plus |
X | 23542271 | X | 3572595..3572763 | 664..832 | 845 | 100 | Plus |
X | 23542271 | X | 3571822..3571939 | 16..133 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:54:46 has no hits.
BS17592.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:28 Download gff for
BS17592.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-PB | 676..1491 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:57 Download gff for
BS17592.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 796..1614 | 11..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:53 Download gff for
BS17592.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 796..1614 | 11..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:53 Download gff for
BS17592.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3571820..3571939 | 11..133 | 97 | <- | Plus |
X | 3572003..3572532 | 134..663 | 100 | <- | Plus |
X | 3572595..3572763 | 664..832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:57 Download gff for
BS17592.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3465853..3465972 | 11..133 | 97 | <- | Plus |
arm_X | 3466036..3466565 | 134..663 | 100 | <- | Plus |
arm_X | 3466628..3466796 | 664..832 | 100 | | Plus |
BS17592.5prime Sequence
892 bp (752 high quality bases) assembled on 2007-05-15
> BS17592.5prime
GAAGTTATCAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACA
CCGGCAAGTCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTG
CTAAATGCCGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATT
GCTGAAGAATACGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACAC
TCGAGGTGATATTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACC
GAAAAGCAGGGTCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCT
TCTCATCGAGAATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAG
TGTGCATGCAGCTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAAC
AAGGGTTGGCCCACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAA
TAGCGATACAACGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCA
AAAATCTCGATGTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTG
CCCGATGAAGACTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATC
CATTGTAAACCTCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATT
ACCACGTGGAAAGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGC
AAAAGACTGAATAATCTCTGGGCGACTATTATGGCAAAGGGCAACGAAGT
GGACGAGAAACTGCATCGTCAAATACTTGTGGTGCTTCTGGAGCGCGTAA
TCAACCACCTGAACGATCCCATCCAGCTGACCGACTTTCTCATGGACTCC
CTCCATCAGTTTGATGGCCCCATTGCTTGCTGGCTCTTCAGG
BS17592.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-PA | 1494 | CG2875-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
CG2875-PB | 1491 | CG2875-RB | 138..857 | 157..876 | 3600 | 100 | Plus |
CG2875-PB | 1491 | CG2875-RB | 1..140 | 17..156 | 700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-RA | 1713 | CG2875-RA | 118..994 | 17..892 | 4360 | 99.9 | Plus |
CG2875-RC | 1975 | CG2875-RC | 118..991 | 17..892 | 4305 | 99.5 | Plus |
CG2875-RB | 1710 | CG2875-RB | 118..991 | 17..892 | 4305 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3572595..3573304 | 863..154 | 3550 | 100 | Minus |
X | 23542271 | X | 3573368..3573505 | 154..17 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:45:40 has no hits.
BS17592.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:25 Download gff for
BS17592.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-PA | 1..877 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:44 Download gff for
BS17592.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 118..994 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:21:04 Download gff for
BS17592.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 118..994 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:21:04 Download gff for
BS17592.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3572503..3572532 | 864..892 | 96 | <- | Minus |
X | 3572595..3573303 | 155..863 | 100 | <- | Minus |
X | 3573368..3573505 | 17..154 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:44 Download gff for
BS17592.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3466536..3466565 | 864..892 | 96 | <- | Minus |
arm_X | 3466628..3467336 | 155..863 | 100 | <- | Minus |
arm_X | 3467401..3467538 | 17..154 | 100 | | Minus |
BS17592.complete Sequence
1526 bp assembled on 2007-06-21
GenBank Submission: KX800249
> BS17592.complete
GAAGTTATCAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACA
CCGGCAAGTCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTG
CTAAATGCCGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATT
GCTGAAGAATACGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACAC
TCGAGGTGATATTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACC
GAAAAGCAGGGTCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCT
TCTCATCGAGAATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAG
TGTGCATGCAGCTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAAC
AAGGGTTGGCCCACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAA
TAGCGATACAACGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCA
AAAATCTCGATGTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTG
CCCGATGAAGACTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATC
CATTGTAAACCTCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATT
ACCACGTGGAAAGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGC
AAAAGACTGAATAATCTCTGGGCGACTATTATGGCAAAGGGCAACGAAGT
GGACGAGAAACTGCATCGTCAAATACTTGTGGTGCTTCTGGAGCGCGTAA
TCAACCACCTGAACGATCCCATCCAGCTGACCGACTTTCTCATGGACTCC
CTCCATCAGTTTGATGGCCCCATTGCCTTGCTGGCTCTTCAGGGAATCTT
TACGCTTATGCAAAAGCAGAATATCACCTATCCGGATGTGTATGAGAAGC
TGTACAATATGTTCTATCCACGGATGTTCCACAACAAGTACAAGGCACGC
CTGTTTTACTTGGCCGATATCTTTCTGACCTCCACCCATTTGCCCGAGAA
TCTGGTGGCGGCATTCGTTAAGCGTCTCGCTCGCCTGGCCCTTCAATCGC
CGACCGAAGATGCTGTTATTATGATTCGATTCGTTTGCAATCTGCTATTG
AGACATACTGGATTGCAGAAATTGATTCGCGCCAGCCATGCAGTCGATGA
GGTCAGCGATCCTTACAATCAAACAGAAACGGATCCCGTCAAATCGGAGG
CCATAAACAGTTCGCTGTGGGAAATTACGTTGCTGCAGAAACACGTTGTA
CCAGAGGTGGCCAATGCGGCACGGTTTATTAACTCATCGCTGCCCGTAAT
GGAATTCGACTTAGCACCCCTCTTGGACAGAAAGGAATGCAATATTTTCG
ACGACGAATTACAGTCGAAGGCCAAACAATTTGCTCTGAACTACGAACGT
CCTACCAATTTGGCTTTGCCTAAAAACCAATTCGTGACCAAATACTGGGA
CCTCATCTAGAAGCTTTCTAGACCAT
BS17592.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-RA | 1494 | CG2875-PA | 1..1494 | 17..1510 | 7470 | 100 | Plus |
CG2875-RC | 1491 | CG2875-PC | 1..1491 | 17..1510 | 7390 | 99.8 | Plus |
CG2875-RB | 1491 | CG2875-PB | 1..1491 | 17..1510 | 7390 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-RA | 1713 | CG2875-RA | 118..1612 | 17..1511 | 7475 | 100 | Plus |
CG2875-RC | 1975 | CG2875-RC | 118..1609 | 17..1511 | 7395 | 99.8 | Plus |
CG2875-RB | 1710 | CG2875-RB | 118..1609 | 17..1511 | 7395 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3572595..3573304 | 863..154 | 3550 | 100 | Minus |
X | 23542271 | X | 3572003..3572533 | 1393..863 | 2655 | 100 | Minus |
X | 23542271 | X | 3573368..3573505 | 154..17 | 690 | 100 | Minus |
X | 23542271 | X | 3571822..3571939 | 1511..1394 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:30:44 has no hits.
BS17592.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:20 Download gff for
BS17592.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 1..1494 | 17..1510 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:59:05 Download gff for
BS17592.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 116..1612 | 17..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:10 Download gff for
BS17592.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 118..1611 | 17..1510 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:20 Download gff for
BS17592.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 116..1612 | 17..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:19 Download gff for
BS17592.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 118..1611 | 17..1510 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:19 Download gff for
BS17592.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3572003..3572532 | 864..1393 | 100 | <- | Minus |
X | 3571823..3571939 | 1394..1510 | 100 | <- | Minus |
X | 3572595..3573303 | 155..863 | 100 | <- | Minus |
X | 3573368..3573505 | 17..154 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:10 Download gff for
BS17592.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3465856..3465972 | 1394..1510 | 100 | <- | Minus |
arm_X | 3466036..3466565 | 864..1393 | 100 | <- | Minus |
arm_X | 3466628..3467336 | 155..863 | 100 | <- | Minus |
arm_X | 3467401..3467538 | 17..154 | 100 | | Minus |
BS17592.pep Sequence
Translation from 16 to 1509
> BS17592.pep
MKPLTVKVNDDTGKSLAKKKLQSKANSLLNAEQVDIKTLKGFVQLLKNTP
DNMPAGEVMNTLEVIFKNLLKRKAIDGTEKQGLKIKKLYEETWLLLIENL
LVDSQCSVAVKVCMQLIKVEAKHPIAPNKGWPTYWIRGMLETLINSDTTP
TTALANYGKYCKNLDVLEITLTQLKSLVPDEDFKDSPIKAMNFLSIVNLL
DMGKSVLSTADYHVESAKKQTFNYELNRKRLNNLWATIMAKGNEVDEKLH
RQILVVLLERVINHLNDPIQLTDFLMDSLHQFDGPIALLALQGIFTLMQK
QNITYPDVYEKLYNMFYPRMFHNKYKARLFYLADIFLTSTHLPENLVAAF
VKRLARLALQSPTEDAVIMIRFVCNLLLRHTGLQKLIRASHAVDEVSDPY
NQTETDPVKSEAINSSLWEITLLQKHVVPEVANAARFINSSLPVMEFDLA
PLLDRKECNIFDDELQSKAKQFALNYERPTNLALPKNQFVTKYWDLI*
BS17592.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-PA | 497 | CG2875-PA | 1..497 | 1..497 | 2550 | 100 | Plus |
CG2875-PC | 496 | CG2875-PC | 1..496 | 1..497 | 2533 | 99.8 | Plus |
CG2875-PB | 496 | CG2875-PB | 1..496 | 1..497 | 2533 | 99.8 | Plus |