Clone Sequence Records
BS17593.complete Sequence
4166 bp assembled on 2010-07-15
GenBank Submission: KX805446
> BS17593.complete
GAAGTTATCAGTCGACATGGACACAGGCGAGGCGCTGAAGTCCTGGCTGA
CTGAAACGAACAAGCCGTTCGCGGCACGTGTTGAGTTCGCTCTGAAGGTA
TGGCAGTCCGTGGAGTTCCCCTACCTCAATAAGTACGAGGTCATCGCCGA
CTGGCTGGCGAAATCATTGGGTGGGTGCAAGGATTTACCCTTCCAACAAC
TCAAGGATTTCCTGAGGCTGAGGGCGCAGCCTGGCTGGGTTACTCAGACA
ACGAAATGCCAGTTGATTCACGCTCTCTACGAGATTGTCTCCCGGGAGGA
GAACGCAAACGAGTCGGCACTGGAAGTCCTGCCCATGGTTCTCAGTTCTG
AGCTGCTCCAGGATGCCTTGCGGTCCAGCAACAAGCTTCTATTCGAATGC
TATGGCAGCCTGTTCAGATGCCATCAAAAGTGCGTCGAACTTCGCAAGGA
TAACAAGGATCGGACTGAGAGCCAAGACCACTGGGATGCAGAGTTTGTAG
TTCCTGTGATCAAGCAGCTGACAGAGATGGTTCGCCGCTCTCAGGAGCCT
GAAAAGCTTTTAGAAGAGTACAATTCGAAAACTGTTCGTCCTCTTGTGGA
GCTGCATCTGACCTTAAAAACTTCATGCCTAGACGAACTGGCCGAGCTGG
AAAAGCAAATCAAGGCGGAGTTTGACATCACACGGATTAAGGACCTTCCG
CTGCATGTCAGCCTGATCCTTTTGGAGGCTAGTGTCCTGAATAATCGCTT
CCAAACAGCTAACATCAGCACCATCTTACTGTGTATATTTAACACGGAGG
CATTATCGCAGTCATCGCTTCAACTGACCGCCCATTTCCTTATGTCACTG
CGTAAATACAATGTATCCCTGCAGTTTAAATTGGAAAATCTATCGATCAC
CGCGTTTGCCTATGTTTCTGATCAGCTGCTGCGTTTGGTGCGCGAGTACA
AGAAGTCCAACTTAAAAGAGGTTTTAATACTTCTCTGTTCTGCGTTGCGG
TATAATCCTCTCCTGCTGGAGCAGAGTGTTTACCAGATAACCGTTTGGAT
GCTCACGACTCCCAAGGAGAATGCCCAAGTGGAGGAGCTGTATTCGGAGT
ACCTTATTCTACTGCTGGACATGTTTCGCCGTCTTAGTCGCGCAGAGCGG
TTCATCATCAATCTCCTCAAGGTCCTAGGAGCATGGTTGGGAAAGTACAC
TTTGGATGTTCCCCCTAATGAAGCTAAGAAGCGACGCATCCAGGACTCTA
AAATTATTGAAGCTGAAGGCCATCAGTTGGAGGAGCGCTTTCTAGGCATA
ATTTTTAATAGAACCCCTTTAGCCACAGCTCCTTCGGCCAATGACGCTTT
CAAGCAGCTGTGCCAAACGTGGCCAAGCCACTCAGCCGGTGTGGCTTTCA
CTCGTTTAATTAGCAACCTGATGAGCAAACCATCTCTGGTGATTTGGAAA
AGTCTGTTGCATTCCTTCGCGGAGCTGCTTGAGGAGGATCAGCCGAAAGA
AGTGCTGCCCGAAAACCTGGACTTTGCTCGGGAACTGCATGCTGCGCTCC
TTTGCCAATACTTAAACGGCACTCGACTGGCTGAGCAAGTGCAACTTTAT
CAGCTGCAAGTGGAGCAACAACTACAGCACACTTGCCAGGTCCTGGAGCA
GTTCGGACGGCTTTTACTACGCCAAGAGCACAACCGCCGGCTTATGAATG
CCTTTCTGGAGTGCACTGAGAGAGCCAGCGGTTTTGAGCTTCTATTGGCG
TACTACTGGCCAGATGGTTTCCCCGCCAGCCAGCGGCCAGTCCAGCTGAG
GGGTTTCCTGCCCACCGCCGAGTGGACGTTGATCCAGCAAAGGGTGTACA
ACTTTGGCAAGAACTGCTGCCGGCTGAGATTGCAGCGTTTGGAGCTGCAG
CTTGTTGAGAGTGGTTGGTTGCTGAAGGATCAAAGGGGAGCCAATTGTTC
GGATGCCCTGGCTGAGTTAGTCCCACCGTATCAACTCTTTCGGCTTTCCA
GACCACAGAAGCAGCTCCGTTTGCATCAAAGGAAACATAATCAAAGCTTG
GAACCCCATCTAAATGATTCGGAGAGCATTGAGATCCTTACATTGCAGCT
GCTTAAGGAATATGGAGCAGAGGCCAAAGAAGCGAAGGCCAAGGGGTCAC
TATTGGTGAAACTGAAACTGGAAGAGCAGGTGGAGGAGAACTCGCTGACA
CAATTCCTAAGGGATAACGCGTCGGTGGAAATTGACTTGCATTTGCCCCC
AGCCCAGGTACTGGTCAAGACTCTGCAGGGCCTTCCATTGGCTCAGTTGC
CCCGTAACATTCGATCGCGCCTTTGGCTGGTGATCTTTGTTCTATACAGG
GATCTCAGTCTTAGCCATCAGGAGGAGAACGCCAATCAGATTCTGGAGCT
ACTAATAGATCTTATGCATTTCGGCCATCCGCTTCCCATATGCAGCTACT
TCCCGCGGCTAAGCGAACTGCTTTGCCTTATCCCCACCAGCTCGACGGTG
GGTTGGAGCTTCTACGAAACACTTTTTGCACGTTGCATTCGCCGACAGGG
TGCCGGTAGTGAAGCATTTCTTGCAAGTTGCACGGGCTTTTTTAAGGATC
AACTGGCTGCGTTAAACAAATTGCCAGCGGAAGAGCGTCGTCTTTTGCTG
CTGGCCATCGAAACACTTAGCAGTGTAACTGGAGCTCAGGGCAGGCGATT
GCAAGGCCAGCTACAGCCACTTATTCAGATCTATGGCGAAATGGTGACTC
ACAAGTTTCGCTCCAAGAAAAAGGAGGCGTCTGCTTATAAGGAGTTCGTG
GATAGCACGCTATCAGGTTATGCAACTTACGTGAGCAATTGCATAAATAG
CGTAGTCAGGTGGGAGCGGGAAGAGCAGAAGAAGAGAAATGAGTCGGAGA
GTTCAGAAAAAACGAAGGCTGAGCCAAAAGTAGACCACAAGAAGAAAAAT
AGGGATCCAGAGACAGCGAAGATTCAGGAGTTGGAGGACAATGGAAAGCA
GAGGCAGCCGAAACTCATAGATGAAAACTTTCGACGTATCTGTAAGATAT
ACATTGGTCACTCGTTGAACTATCGCGATGCTAATGCGACACGCTTGCTG
AATGTGGCGCTCACCCATCGTCAACGTTTGCATTTGGATCCGGATGAGAT
AGAGTTCGTGCTAAGCAGCTATTGGAGGCAATTGAATACAGACATTGAGG
TGGGCGACACATTTTCCAGTTCAGCACTGGATTGTCTGGAGCCGGCCATT
AAGCTGATCATTGGCTATAAGACTAACGAGGATTTCCTACTGCTCCTGCA
CCGTCTTTCCTCACAAGTGGAGCAAATGGCACGCCCTGCGTCGCAAACGG
AGCACACGGCGCTCCAGAATGTGCTAACCCTTTTGGCTCTCTTTGCCAAA
TGCTCGTTGAGCAGCGTGAAGGGAGCGATGCTTAATGAGCATTTCGAGGT
GATCAGTGTGAGTGTTGCACTGCGTCTACCGGAACCCAAAGACTTGGCAT
ATTCTGGTCATGCCCTTCGACTCCTGGAGGCCCAGCGCAATCTGGCTGGG
AATCGTACGGTCCCTCTCACAGGAGAGTCCCTGGATTGCCTTCTTAGCAG
CATGTTGGATATAGACATCAAGCACTTGATCAGCCACGGCGGCAGTTGGC
AACAATTTGTGGATCTGTATAGTGCACTCACAGACAACCTGATTGTGCTG
TTAAAACAACACAGTAACCTGATGTCAGACCGAGCAGCCCAGCTCAGTGT
CCTTTGCCAGGATCTCATCCAGGCCGTCGTTGGCTATCGGGCGGAAAGAA
AGCAGACACAGGACATAAGTGAAACGGAGCTGGATGGTTTGGCGGACTTG
GGTCTGAAACTGGCTACTGTAATGGCCACAGTGCGCGCCACGCAGGCACT
GGCCGTGAAGAGAGTCGCACCCTTCCTGCTTATCTTCACCATTCGCCAAA
TGGTAGCAACCGAAAGGCCCACGACGCTGTTCGAAAAGATCAAGGTCCAC
ATAGTGCGCGTGTGCCATGAACTGATCGGTATTTGCGATCACCGTGCCGG
ACACTTCATCCTACGCTCCAGCAATGAGGCCGGCGCCAGGATGTACGAAG
GATTGGTGAAGGATCACGAGAAGTACCACAAATTTAGGGGCAAGGTGTAG
AAGCTTTCTAGACCAT
BS17593.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18273-RA | 4134 | CG18273-PA | 1..4134 | 17..4150 | 20670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18273-RA | 4342 | CG18273-RA | 100..4235 | 15..4150 | 20680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 485028..487404 | 2408..32 | 11885 | 100 | Minus |
| X | 23542271 | X | 484310..484967 | 3064..2407 | 3290 | 100 | Minus |
| X | 23542271 | X | 483268..483829 | 3988..3427 | 2810 | 100 | Minus |
| X | 23542271 | X | 483884..484247 | 3427..3064 | 1820 | 100 | Minus |
| X | 23542271 | X | 480807..481170 | 3427..3064 | 1685 | 97.5 | Minus |
| X | 23542271 | X | 478174..478524 | 3838..3478 | 1350 | 92.2 | Minus |
| X | 23542271 | X | 481239..481507 | 597..329 | 1135 | 94.8 | Minus |
| X | 23542271 | X | 480260..480540 | 3988..3706 | 1125 | 94 | Minus |
| X | 23542271 | X | 482884..483047 | 4150..3987 | 820 | 100 | Minus |
| X | 23542271 | X | 480566..480739 | 3651..3478 | 780 | 96.6 | Minus |
| X | 23542271 | X | 478599..478770 | 3427..3254 | 715 | 95.4 | Minus |
| X | 23542271 | X | 478798..478906 | 639..531 | 425 | 92.7 | Minus |
| X | 23542271 | X | 478950..479021 | 401..329 | 255 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:01:42 has no hits.
BS17593.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:36 Download gff for
BS17593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18273-RA | 75..4208 | 17..4150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:39 Download gff for
BS17593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18273-RA | 102..4235 | 17..4150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:40 Download gff for
BS17593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18273-RA | 102..4235 | 17..4150 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:40 Download gff for
BS17593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 482884..483045 | 3989..4150 | 100 | <- | Minus |
| X | 483268..483828 | 3428..3988 | 100 | <- | Minus |
| X | 483884..484246 | 3065..3427 | 100 | <- | Minus |
| X | 484310..484965 | 2409..3064 | 100 | <- | Minus |
| X | 485028..487403 | 33..2408 | 100 | <- | Minus |
| X | 487465..487480 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:39 Download gff for
BS17593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 377917..378279 | 3065..3427 | 100 | <- | Minus |
| arm_X | 376917..377078 | 3989..4150 | 100 | <- | Minus |
| arm_X | 377301..377861 | 3428..3988 | 100 | <- | Minus |
| arm_X | 378343..378998 | 2409..3064 | 100 | <- | Minus |
| arm_X | 379061..381436 | 33..2408 | 100 | <- | Minus |
| arm_X | 381498..381513 | 17..32 | 100 | | Minus |
BS17593.3prime Sequence
827 bp (773 high quality bases) assembled on 2007-05-15
> BS17593.3prime
ATGGTCTAGAAAGCTTCTACACCTTGCCCCTAAATTTGTGGTACTTCTCG
TGATCCTTCACCAATCCTTCGTACATCCTGGCGCCGGCCTCATTGCTGGA
GCGTAGGATGAAGTGTCCGGCACGGTGATCGCAAATACCGATCAGTTCAT
GGCACACGCGCACTATGTGGACCTTGATCTTTTCGAACAGCGTCGTGGGC
CTTTCGGTTGCTACCATTTGGCGAATGGTGAAGATAAGCAGGAAGGGTGC
GACTCTCTTCACGGCCAGTGCCTGCGTGGCGCGCACTGTGGCCATTACAG
TAGCCAGTTTCAGACCCAAGTCCGCCAAACCATCCAGCTCCGTTTCACTT
ATGTCCTGTGTCTGCTTTCTTTCCGCCCGATAGCCAACGACGGCCTGGAT
GAGATCCTGGCAAAGGACACTGAGCTGGGCTGCTCGGTCTGACATCAGGT
TACTGTGTTGTTTTAACAGCACAATCAGGTTGTCTGTGAGTGCACTATAC
AGATCCACAAATTGTTGCCAACTGCCGCCGTGGCTGATCAAGTGCTTGAT
GTCTATATCCAACATGCTGCTAAGAAGGCAATCCAGGGACTCTCCTGTGA
GAGGGACCGTACGATTCCCAGCCAGATTGCGCTGGGCCTCCAGGAGTCGA
AGGGCATGACCAGAATATGCCAAGTCTTTGGGTTCCGGTAGACGCAGTGC
AACACTCACACTGATCACCTCGAAATGCTCATTAAGCATCGCTCCCTTCA
CGCTGCTCAACGAGCATTTGGCAAAGAGAGCCAAAAGGGTTAGCACATTC
TGGAGCGCCGTGTGCTCCGTTTGCGAC
BS17593.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18273-PA | 4134 | CG18273-RA | 3324..4134 | 827..17 | 4055 | 100 | Minus |
| CG18275-PA | 468 | CG18275-RA | 187..434 | 640..393 | 965 | 95.5 | Minus |
| CG18166-PB | 834 | CG18166-RB | 585..710 | 383..258 | 530 | 96.8 | Minus |
| CG18166-PB | 834 | CG18166-RB | 712..787 | 254..179 | 380 | 100 | Minus |
| CG18275-PA | 468 | CG18275-RA | 102..152 | 827..777 | 205 | 96 | Minus |
| CG18275-PA | 468 | CG18275-RA | 149..188 | 778..739 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18273-RA | 4342 | CG18273-RA | 3425..4235 | 827..17 | 4055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 483268..483829 | 179..740 | 2810 | 100 | Plus |
| X | 23542271 | X | 478174..478524 | 329..689 | 1350 | 92.2 | Plus |
| X | 23542271 | X | 480260..480540 | 179..461 | 1125 | 94 | Plus |
| X | 23542271 | X | 482884..483047 | 17..180 | 820 | 100 | Plus |
| X | 23542271 | X | 480566..480739 | 516..689 | 780 | 96.6 | Plus |
| X | 23542271 | X | 483884..483971 | 740..827 | 440 | 100 | Plus |
| X | 23542271 | X | 480807..480894 | 740..827 | 395 | 96.6 | Plus |
| X | 23542271 | X | 478599..478684 | 740..827 | 345 | 95.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:07:26 has no hits.
BS17593.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:37 Download gff for
BS17593.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18273-PA | 3324..4134 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:26 Download gff for
BS17593.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18273-RA | 3425..4235 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:13 Download gff for
BS17593.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18273-RA | 3425..4235 | 17..827 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:13 Download gff for
BS17593.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 482884..483045 | 17..178 | 100 | <- | Plus |
| X | 483268..483828 | 179..739 | 100 | <- | Plus |
| X | 483884..483971 | 740..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:26 Download gff for
BS17593.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 376917..377078 | 17..178 | 100 | <- | Plus |
| arm_X | 377301..377861 | 179..739 | 100 | <- | Plus |
| arm_X | 377917..378004 | 740..827 | 100 | | Plus |
BS17593.pep Sequence
Translation from 16 to 4149
> BS17593.pep
MDTGEALKSWLTETNKPFAARVEFALKVWQSVEFPYLNKYEVIADWLAKS
LGGCKDLPFQQLKDFLRLRAQPGWVTQTTKCQLIHALYEIVSREENANES
ALEVLPMVLSSELLQDALRSSNKLLFECYGSLFRCHQKCVELRKDNKDRT
ESQDHWDAEFVVPVIKQLTEMVRRSQEPEKLLEEYNSKTVRPLVELHLTL
KTSCLDELAELEKQIKAEFDITRIKDLPLHVSLILLEASVLNNRFQTANI
STILLCIFNTEALSQSSLQLTAHFLMSLRKYNVSLQFKLENLSITAFAYV
SDQLLRLVREYKKSNLKEVLILLCSALRYNPLLLEQSVYQITVWMLTTPK
ENAQVEELYSEYLILLLDMFRRLSRAERFIINLLKVLGAWLGKYTLDVPP
NEAKKRRIQDSKIIEAEGHQLEERFLGIIFNRTPLATAPSANDAFKQLCQ
TWPSHSAGVAFTRLISNLMSKPSLVIWKSLLHSFAELLEEDQPKEVLPEN
LDFARELHAALLCQYLNGTRLAEQVQLYQLQVEQQLQHTCQVLEQFGRLL
LRQEHNRRLMNAFLECTERASGFELLLAYYWPDGFPASQRPVQLRGFLPT
AEWTLIQQRVYNFGKNCCRLRLQRLELQLVESGWLLKDQRGANCSDALAE
LVPPYQLFRLSRPQKQLRLHQRKHNQSLEPHLNDSESIEILTLQLLKEYG
AEAKEAKAKGSLLVKLKLEEQVEENSLTQFLRDNASVEIDLHLPPAQVLV
KTLQGLPLAQLPRNIRSRLWLVIFVLYRDLSLSHQEENANQILELLIDLM
HFGHPLPICSYFPRLSELLCLIPTSSTVGWSFYETLFARCIRRQGAGSEA
FLASCTGFFKDQLAALNKLPAEERRLLLLAIETLSSVTGAQGRRLQGQLQ
PLIQIYGEMVTHKFRSKKKEASAYKEFVDSTLSGYATYVSNCINSVVRWE
REEQKKRNESESSEKTKAEPKVDHKKKNRDPETAKIQELEDNGKQRQPKL
IDENFRRICKIYIGHSLNYRDANATRLLNVALTHRQRLHLDPDEIEFVLS
SYWRQLNTDIEVGDTFSSSALDCLEPAIKLIIGYKTNEDFLLLLHRLSSQ
VEQMARPASQTEHTALQNVLTLLALFAKCSLSSVKGAMLNEHFEVISVSV
ALRLPEPKDLAYSGHALRLLEAQRNLAGNRTVPLTGESLDCLLSSMLDID
IKHLISHGGSWQQFVDLYSALTDNLIVLLKQHSNLMSDRAAQLSVLCQDL
IQAVVGYRAERKQTQDISETELDGLADLGLKLATVMATVRATQALAVKRV
APFLLIFTIRQMVATERPTTLFEKIKVHIVRVCHELIGICDHRAGHFILR
SSNEAGARMYEGLVKDHEKYHKFRGKV*
BS17593.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18273-PA | 1377 | CG18273-PA | 1..1377 | 1..1377 | 7024 | 100 | Plus |
