Clone Sequence Records
BS17602.3prime Sequence
852 bp (772 high quality bases) assembled on 2007-05-29
> BS17602.3prime
ATGGTCTAGAAAGCTTTCACAGAGTGTCGTTGAACAAGCGCTTGGCCTTG
TAGCTCGGATGAATCGGTCCCGGTATCCAGTGTGGCTTAAGGGCACTCTT
ACCGGGCAACCGATTCGCGTCGTAGGGCACCTGCGGAGACAGCTTCAGCT
GGCGGTAGTAATCGCTCTTGGGGTAGATGCAGTTGCTCTTAGTCACGATC
CGCACATGCTTGCCACTGCCCGTTTGTGGAGTCGCAAACTCTGCGCGCGC
AGGCTGTTTGGGTGTGGACTGCGGCAGCTTACTGTTGGCCTGCTTCACTT
GCAGTTTTCGAGAGGGAACAAAGATGTCCTGCTCACCGTCCTCTAAAGGG
GCATCCCATCCGTTGGTCGGAGCATCATCATCAACACCGGCAGCCTTCGT
TTTGGGAGTCGGCTTGGCCTTGGACTGTCCCTCCACCTTAGGTGTGGGCT
TGGGCTGCTCGTCTGTCTTCGGCTTCGACTGCTCCTCCTTCGTCTTGGAG
TGGTCCAATTTCTTGCGCTTCGCAGGCTCTTCTTTTTCTGCCTTCAAGGT
CGGTTGATCCTCTATCTTGGGCTTGGACTGGTCATTCTTCGGCTTAAGCT
GGCTTTTCTTCTTCACCTTCGTCTGGTCATCTTTGTTCTGCTGTGGCGGT
TCTTCCTTTTTTGCTTTCTTCGACTTGGGCTCGGCCTCCTTGACCTCCTC
TACTACCCATGCGTTGTTTATGCTAGAACGCACCTTTGCATTGTAATTCA
CCTTCTTCTGCAGCTCAGGAGGCAGAGCCTTGCTAATAACCTCATCGTAG
TTGTGCTCGTCCACCTCCTCAAAGTAAATGGACTGCAGTAGGCGTTTGCG
TT
BS17602.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12396-PA | 2064 | Nnp-1-RA | 1229..2064 | 852..17 | 4155 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nnp-1-RA | 2882 | CG12396-RA | 1342..2177 | 852..17 | 4165 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13364013..13364848 | 17..852 | 4165 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:35:46 has no hits.
BS17602.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:09:00 Download gff for
BS17602.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12396-PA | 1229..2064 | 17..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:52:34 Download gff for
BS17602.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnp-1-RA | 1342..2189 | 6..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:18 Download gff for
BS17602.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnp-1-RA | 1342..2189 | 6..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:18 Download gff for
BS17602.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13364001..13364848 | 6..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:52:34 Download gff for
BS17602.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13364001..13364848 | 6..852 | 99 | | Plus |
BS17602.5prime Sequence
857 bp (799 high quality bases) assembled on 2007-05-29
> BS17602.5prime
GAAGTTATCAGTCGACATGGTGACGCGCAAGAAGCCAGTTAAGCGCAACG
CCGAGGCGGCCGAAATCCAGGTCGAGCAGGAGGAGGACGCTTCACAGCCG
AAGGTGGCCAAGGAGCTGATGGTGGTCGCCCAGGAGGTGAAAATTATACG
TGCTCTTGCCTGCAACGATGTGGTGGAGCGTAATCGCCAGATCCGCATTT
TGCGCAAGTGGTTCAAGGCGCGTGCCGGTAGCTCCTTTCCCTTCAACGAG
GACGACTTCATGCGCATCTGGAAGGGATTGTACTACACCATGTGGATGTC
GGATAAGCCGCTGGTGCAGGAGGAGCTGGCCGAGAAGTTGGCTCAAATGG
TGGACAGCTTCGGCGGTAATACGGCCTGCAGTCTGGCCTACTTTAGTGCG
TTTATGCGCACAATGTGCCAGGAGTACTTTGGCATAGATCAGTGGCGCAT
GGACAAATTCCTGATGCTCACCCGCCGCATGGTGCGTTATCTACTGAGAT
TCCTCAAACAGAACAACTGGAATGCGGACCTGATAGCCGCATTCAACAGC
AGCATGCAGCTTTCTGTGATGTCGGAGCAGCCTAAGTCTCGCGGCATGAC
CATGCACTACCTAGATGTTTTCTTTGAGGAGCTGGCCAAGGCGGCCAATG
GTGAGATCACTGCTGCTCAGGTTAATATGTTCTTGCGTCCGTTTGTCACC
TACATTGCTACACAACGCGATGCTAAGCTAGTGGCACAGTGCCGCACAAG
GGTACTCTATCATCTGATGTACCAGAGCGACTTAGGACGACAGTACAGCG
AAAAGTACAATGCCTGGAAGCAGATGGGTTTCCCCACCGCCCTCCATGAT
GACATTG
BS17602.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12396-PA | 2064 | Nnp-1-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nnp-1-RA | 2882 | CG12396-RA | 114..954 | 17..857 | 4160 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13365236..13366076 | 857..17 | 4145 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:12:24 has no hits.
BS17602.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:09:06 Download gff for
BS17602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12396-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:47:44 Download gff for
BS17602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnp-1-RA | 114..954 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:22 Download gff for
BS17602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnp-1-RA | 114..954 | 17..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:22 Download gff for
BS17602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13365236..13366076 | 17..857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:47:44 Download gff for
BS17602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13365236..13366076 | 17..857 | 99 | | Minus |
BS17602.complete Sequence
2096 bp assembled on 2009-12-07
GenBank Submission: KX803015
> BS17602.complete
GAAGTTATCAGTCGACATGGTGACGCGCAAGAAGCCAGTTAAGCGCAACG
CCGAGGCGGCCGAAATCCAGGTCGAGCAGGAGGAGGACGCTTCACAGCCG
AAGGTGGCCAAGGAGCTGATGGTGGTCGCCCAGGAGGTGAAAATTATACG
TGCTCTTGCCTGCAACGATGTGGTGGAGCGTAATCGCCAGATCCGCATTT
TGCGCAAGTGGTTCAAGGCGCGTGCCGGTAGCTCCTTTCCCTTCAACGAG
GACGACTTCATGCGCATCTGGAAGGGATTGTACTACACCATGTGGATGTC
GGATAAGCCGCTGGTGCAGGAGGAGCTGGCCGAGAAGTTGGCTCAAATGG
TGGACAGCTTCGGCGGTAATACGGCCTGCAGTCTGGCCTACTTTAGTGCG
TTTATGCGCACAATGTGCCAGGAGTACTTTGGCATAGATCAGTGGCGCAT
GGACAAATTCCTGATGCTCACCCGCCGCATGGTGCGTTATCTACTGAGAT
TCCTCAAACAGAACAACTGGAATGCGGACCTGATAGCCGCATTCAACAGC
AGCATGCAGCTTTCTGTGATGTCGGAGCAGCCTAAGTCTCGCGGCATGAC
CATGCACTACCTAGATGTTTTCTTTGAGGAGCTGGCCAAGGCGGCCAATG
GTGAGATCACTGCTGCTCAGGTTAATATGTTCTTGCGTCCGTTTGTCACC
TACATTGCTACACAACGCGATGCTAAGCTAGTGGCACAGTGCCGCACAAG
GGTACTCTATCATCTGATGTACCAGAGCGACTTAGGACGACAGTACAGCG
AAAAGTACAATGCCTGGAAGCAGATGGGTTTCCCCACCGCCTCCATTGAT
GACATTGAGAAACTAGATTCTGGATTTGACGAGGAGGATGACGAGGTCAA
CGCCGAGGAGGAGCAGCCGCGGGCCACATCCTTGGATCCCCGAGCGGGCA
ACGTGGACGTTCACATGCCGGAGCTGCCGCTCAACGCTGATTGCGTACTA
GATGAGCTGCAGACGCAGCTACGCACCAACGATTTTAACAGCAAGAGACG
CAAGGGATTGCGCAAACTTATCCAGATCTTTGAGACTTACCAGAGAGGAG
AGTTTCCACTTGGCGTGAGGACAATGCCAAAGGTGGAGGGACAAACTCTG
TCCGAAATGGTGGAGCAAAAAGTGGCTGCCTTAGATAAGATGGAGGACGA
GGTCTTTGCAACCGGAAGAAAACTGAAGAAGCTCAACAAATCCAAACGCA
AACGCCTACTGCAGTCCATTAACTTTGAGGAGGTGGACGAGCACAACTAC
GATGAGGTTATTAGCAAGGCTCTGCCTCCTGAGCTGCAGAAGAAGGTGAA
TTACAATGCAAAGGTGCGTTCTAGCATAAACAACGCATGGGTAGTAGAGG
AGGTCAAGGAGGCCGAGCCCAAGTCGAAGAAAGCAAAAAAGGAAGAACCG
CCACAGCAGAACAAAGATGACCAGACGAAGGTGAAGAAGAAAAGCCAGCT
TAAGCCGAAGAATGACCAGTCCAAGCCCAAGATAGAGGATCAACCGACCT
TGAAGGCAGAAAAAGAAGAGCCTGCGAAGCGCAAGAAATTGGACCACTCC
AAGACGAAGGAGGAGCAGTCGAAGCCGAAGACAGACGAGCAGCCCAAGCC
CACACCTAAGGTGGAGGGACAGTCCAAGGCCAAGCCGACTCCCAAAACGA
AGGCTGCCGGTGTTGATGATGATGCTCCGACCAACGGATGGGATGCCCCT
TTAGAGGACGGTGAGCAGGACATCTTTGTTCCCTCTCGAAAACTGCAAGT
GAAGCAGGCCAACAGTAAGCTGCCGCAGTCCACACCCAAACAGCCTGCGC
GCGCAGAGTTTGCGACTCCACAAACGGGCAGTGGCAAGCATGTGCGGATC
GTGACTAAGAGCAACTGCATCTACCCCAAGAGCGATTACTACCGCCAGCT
GAAGCTGTCTCCGCAGGTGCCCTACGACGCGAATCGGTTGCCCGGTAAGA
GTGCCCTTAAGCCACACTGGATACCGGGACCGATTCATCCGAGCTACAAG
GCCAAGCGCTTGTTCAACGACACTCTGTGAAAGCTTTCTAGACCAT
BS17602.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nnp-1-RA | 2064 | CG12396-PA | 1..2064 | 17..2080 | 10320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nnp-1-RA | 2882 | CG12396-RA | 114..2177 | 17..2080 | 10320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13364013..13366076 | 2080..17 | 10320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:05:34 has no hits.
BS17602.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:31 Download gff for
BS17602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnp-1-RA | 113..2175 | 17..2079 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:44 Download gff for
BS17602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnp-1-RA | 114..2176 | 17..2079 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:07 Download gff for
BS17602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnp-1-RA | 113..2175 | 17..2079 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:48 Download gff for
BS17602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnp-1-RA | 114..2176 | 17..2079 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:48 Download gff for
BS17602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13364014..13366076 | 17..2079 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:44 Download gff for
BS17602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13364014..13366076 | 17..2079 | 100 | | Minus |
BS17602.pep Sequence
Translation from 16 to 2079
> BS17602.pep
MVTRKKPVKRNAEAAEIQVEQEEDASQPKVAKELMVVAQEVKIIRALACN
DVVERNRQIRILRKWFKARAGSSFPFNEDDFMRIWKGLYYTMWMSDKPLV
QEELAEKLAQMVDSFGGNTACSLAYFSAFMRTMCQEYFGIDQWRMDKFLM
LTRRMVRYLLRFLKQNNWNADLIAAFNSSMQLSVMSEQPKSRGMTMHYLD
VFFEELAKAANGEITAAQVNMFLRPFVTYIATQRDAKLVAQCRTRVLYHL
MYQSDLGRQYSEKYNAWKQMGFPTASIDDIEKLDSGFDEEDDEVNAEEEQ
PRATSLDPRAGNVDVHMPELPLNADCVLDELQTQLRTNDFNSKRRKGLRK
LIQIFETYQRGEFPLGVRTMPKVEGQTLSEMVEQKVAALDKMEDEVFATG
RKLKKLNKSKRKRLLQSINFEEVDEHNYDEVISKALPPELQKKVNYNAKV
RSSINNAWVVEEVKEAEPKSKKAKKEEPPQQNKDDQTKVKKKSQLKPKND
QSKPKIEDQPTLKAEKEEPAKRKKLDHSKTKEEQSKPKTDEQPKPTPKVE
GQSKAKPTPKTKAAGVDDDAPTNGWDAPLEDGEQDIFVPSRKLQVKQANS
KLPQSTPKQPARAEFATPQTGSGKHVRIVTKSNCIYPKSDYYRQLKLSPQ
VPYDANRLPGKSALKPHWIPGPIHPSYKAKRLFNDTL*
BS17602.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nnp-1-PA | 687 | CG12396-PA | 1..687 | 1..687 | 3573 | 100 | Plus |
