Clone BS17604 Report

Search the DGRC for BS17604

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptPsn-RA
Protein status:BS17604.pep: full length peptide match
Sequenced Size:1658

Clone Sequence Records

BS17604.complete Sequence

1658 bp assembled on 2009-12-07

GenBank Submission: KX805486

> BS17604.complete
GAAGTTATCAGTCGACATGGCTGCTGTCAATCTCCAGGCTTCGTGCTCCT
CCGGGCTCGCCTCTGAGGATGACGCCAATGTGGGCAGCCAGATAGGCGCG
GCGGAGCGTTTGGAACGACCTCCAAGGCGGCAACAGCAGCGGAACAACTA
CGGCTCCAGCAATCAGGATCAACCGGATGCTGCCATACTTGCTGTGCCCA
ATGTGGTGATGCGTGAACCTTGTGGCTCGCGCCCTTCAAGACTGACCGGT
GGAGGAGGCGGCAGTGGTGGTCCGCCCACAAATGAAATGGAGGAAGAGCA
GGGCCTGAAATACGGGGCCCAGCATGTGATCAAGTTATTCGTCCCCGTCT
CCCTTTGCATGCTGGTAGTGGTGGCTACCATCAACTCCATCAGCTTCTAC
AACAGCACGGATGTCTATCTCCTCTACACACCTTTCCATGAACAATCGCC
CGAGCCTAGTGTTAAGTTCTGGAGTGCCTTGGCGAACTCCCTGATCCTGA
TGAGCGTGGTGGTGGTGATGACCTTTTTGCTGATTGTTTTGTACAAGAAG
CGTTGCTATCGCATCATTCACGGCTGGCTGATTCTCTCCTCCTTCATGTT
GTTGTTCATTTTTACGTACTTATATTTGGAAGAGCTTCTTCGCGCCTATA
ACATACCGATGGACTACCCTACTGCACTACTGATTATGTGGAACTTTGGA
GTGGTCGGAATGATGTCCATCCATTGGCAGGGACCTCTGCGGTTGCAGCA
AGGATATCTCATTTTCGTGGCAGCCTTGATGGCCTTGGTGTTCATTAAAT
ACCTGCCTGAATGGACTGCCTGGGCTGTATTGGCTGCCATTTCTATTTGG
GATCTTATTGCTGTCCTTTCGCCAAGAGGACCCCTCCGCATTCTGGTGGA
AACGGCTCAGGAGCGAAATGAGCAAATCTTCCCCGCTCTGATTTATTCAT
CCACTGTCGTTTACGCACTTGTAAACACTGTTACGCCGCAGCAATCGCAG
GCCACAGCTTCCTCCTCGCCGTCGTCCAGCAACTCCACCACAACCACGAG
GGCCACGCAGAACTCGCTGGCTTCGCCAGAGGCAGCAGCGGCTAGTGGCC
AACGCACAGGTAACTCCCATCCTCGACAGAATCAGCGGGATGACGGCAGT
GTACTGGCAACTGAAGGTATGCCACTTGTGACTTTTAAAAGCAATTTGCG
CGGAAACGCTGAGGCTGCGGGTTTCACGCAAGAGTGGTCAGCTAACTTGA
GCGAACGTGTGGCTCGTCGCCAGATTGAAGTTCAAAGTACTCAGAGTGGA
AACGCTCAGCGCTCCAACGAGTATAGGACAGTAACAGCTCCGGATCAGAA
TCATCCGGATGGGCAAGAAGAACGTGGCATAAAGCTTGGCCTCGGCGACT
TCATCTTCTACTCGGTATTAGTGGGCAAGGCCTCCAGCTACGGCGACTGG
ACGACCACAATCGCTTGCTTTGTGGCCATCCTCATTGGACTCTGCCTCAC
TCTTCTGCTTCTGGCCATTTGGCGCAAGGCGCTACCCGCCCTGCCCATCT
CAATAACGTTCGGATTGATATTTTGCTTCGCCACTAGTGCGGTGGTCAAG
CCGTTCATGGAGGATCTATCGGCCAAGCAGGTGTTTATATAAAAGCTTTC
TAGACCAT

BS17604.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-RE 1626 CG18803-PE 1..1626 17..1642 8130 100 Plus
Psn-RA 1626 CG18803-PA 1..1626 17..1642 8130 100 Plus
Psn-RD 1584 CG18803-PD 1..1150 17..1166 5750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-RE 1891 CG18803-RE 159..1785 17..1643 8135 100 Plus
Psn-RA 2048 CG18803-RA 316..1942 17..1643 8135 100 Plus
Psn-RD 1879 CG18803-RD 189..1338 17..1166 5750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20434781..20435050 1374..1643 1350 100 Plus
3L 28110227 3L 20434082..20434344 946..1208 1300 99.6 Plus
3L 28110227 3L 20433072..20433310 182..420 1195 100 Plus
3L 28110227 3L 20433641..20433861 631..851 1105 100 Plus
3L 28110227 3L 20433378..20433587 421..630 1050 100 Plus
3L 28110227 3L 20434547..20434714 1208..1375 840 100 Plus
3L 28110227 3L 20432842..20433007 17..182 830 100 Plus
3L 28110227 3L 20433933..20434032 851..950 500 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:20:34 has no hits.

BS17604.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:35 Download gff for BS17604.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 316..1939 17..1640 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:53 Download gff for BS17604.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 316..1939 17..1640 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:06 Download gff for BS17604.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 316..1939 17..1640 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:19 Download gff for BS17604.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 316..1939 17..1640 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:19 Download gff for BS17604.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20434781..20435047 1374..1640 100   Plus
3L 20432842..20433006 17..181 100 -> Plus
3L 20433072..20433310 182..420 100 -> Plus
3L 20433378..20433587 421..630 100 -> Plus
3L 20433641..20433861 631..851 100 -> Plus
3L 20433934..20434032 852..950 100 -> Plus
3L 20434087..20434344 951..1208 100 -> Plus
3L 20434548..20434712 1209..1373 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:53 Download gff for BS17604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20427881..20428147 1374..1640 100   Plus
arm_3L 20425942..20426106 17..181 100 -> Plus
arm_3L 20426172..20426410 182..420 100 -> Plus
arm_3L 20426478..20426687 421..630 100 -> Plus
arm_3L 20426741..20426961 631..851 100 -> Plus
arm_3L 20427034..20427132 852..950 100 -> Plus
arm_3L 20427187..20427444 951..1208 100 -> Plus
arm_3L 20427648..20427812 1209..1373 100 -> Plus

BS17604.3prime Sequence

777 bp (709 high quality bases) assembled on 2007-05-29

> BS17604.3prime
ATGGTCTAGAAAGCTTTTATATAAACACCTGCTTGGCCGATAGATCCTCC
ATGAACGGCTTGACCACCGCACTAGTGGCGAAGCAAAATATCAATCCGAA
CGTTATTGAGATGGGCAGGGCGGGTAGCGCCTTGCGCCAAATGGCCAGAA
GCAGAAGAGTGAGGCAGAGTCCAATGAGGATGGCCACAAAGCAAGCGATT
GTGGTCGTCCAGTCGCCGTAGCTGGAGGCCTTGCCCACTAATACCGAGTA
GAAGATGAAGTCGCCGAGGCCAAGCTTTATGCCACGTTCTTCTTGCCCAT
CCGGATGATTCTGATCCGGAGCTGTTACTGTCCTATACTCGTTGGAGCGC
TGAGCGTTTCCACTCTGAGTACTTTGAACTTCAATCTGGCGACGAGCCAC
ACGTTCGCTCAAGTTAGCTGACCACTCTTGCGTGAAACCCGCAGCCTCAG
CGTTTCCGCGCAAATTGCTTTTAAAAGTCACAAGTGGCATACCTTCAGTT
GCCAGTACACTGCCGTCATCCCGCTGATTCTGTCGAGGATGGGAGTTACC
TGTGCGTTGGCCACTAGCCGCTGCTGCCTCTGGCGAAGCCAGCGAGTTCT
GCGTGGCCCTCGTGGTTGTGGTGGAGTTGCTGGACGACGGCGAGGAGGAA
GCTGTGGCCTGCGATTGCTGCGGCGTAACAGTGTTTACAAGTGCGTAAAC
GACAGTGGATGAATTAATCAGAGCGGGGAAGATTTGCTCTTTTCGCTCCT
GAGCCGTTTCCACCAAAATGCGGAGGG

BS17604.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG18803-PA 1626 Psn-RA 866..1626 777..17 3730 99.6 Minus
CG18803-PB 1584 Psn-RB 1150..1584 451..17 2175 100 Minus
CG18803-PB 1584 Psn-RB 866..1150 777..493 1350 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-RE 1891 CG18803-RE 1024..1785 777..16 3765 99.6 Minus
Psn-RA 2048 CG18803-RA 1181..1942 777..16 3765 99.6 Minus
Psn-RD 1879 CG18803-RD 1338..1773 451..16 2180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20434781..20435050 285..16 1350 100 Minus
3L 28110227 3L 20434082..20434344 713..451 1300 99.6 Minus
3L 28110227 3L 20434547..20434714 451..284 840 100 Minus
3L 28110227 3L 20433964..20434032 777..709 300 95.7 Minus
Blast to na_te.dros performed on 2015-02-13 15:41:32 has no hits.

BS17604.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:09:23 Download gff for BS17604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18803-PA 866..1626 17..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:11 Download gff for BS17604.3prime
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1181..1945 11..777 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:07:36 Download gff for BS17604.3prime
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1181..1945 11..777 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:07:36 Download gff for BS17604.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20434781..20435053 11..285 99   Minus
3L 20433964..20434032 709..777 95 -> Minus
3L 20434087..20434344 451..708 100 -> Minus
3L 20434548..20434712 286..450 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:11 Download gff for BS17604.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20427064..20427132 709..777 95 -> Minus
arm_3L 20427187..20427444 451..708 100 -> Minus
arm_3L 20427648..20427812 286..450 100 -> Minus
arm_3L 20427881..20428153 11..285 99   Minus

BS17604.5prime Sequence

793 bp (672 high quality bases) assembled on 2007-05-29

> BS17604.5prime
GAAGTTATCAGTCGACATGGCTGCTGTCAATCTCCAGGCTTCGTGCTCCT
CCGGGCTCGCCTCTGAGGATGACGCCAATGTGGGCAGCCAGATAGGCGCG
GCGGAGCGTTTGGAACGACCTCCAAGGCGGCAACAGCAGCGGAACAACTA
CGGCTCCAGCAATCAGGATCAACCGGATGCTGCCATACTTGCTGTGCCCA
ATGTGGTGATGCGTGAACCTTGTGGCTCGCGCCCTTCAAGACTGACCGGT
GGAGGAGGCGGCAGTGGTGGTCCGCCCACAAATGAAATGGAGGAAGAGCA
GGGCCTGAAATACGGGGCCCAGCATGTGATCAAGTTATTCGTCCCCGTCT
CCCTTTGCATGCTGGTAGTGGTGGCTACCATCAACTCCATCAGCTTCTAC
AACAGCACGGATGTCTATCTCCTCTACACACCTTTCCATGAACAATCGCC
CGAGCCTAGTGTTAAGTTCTGGAGTGCCTTGGCGAACTCCCTGATCCTGA
TGAGCGTGGTGGTGGTGATGACCTTTTTGCTGATTGTTTTGTACAAGAAG
CGTTGCTATCGCATCATTCACGGCTGGCTGATTCTCTCCTCCTTCATGTT
GTTGTTCATTTTTACGTACTTATATTTGGAAGAGCTTCTTCGCGCCTATA
ACATACCGATGGACTACCCTACTGCCCTACTGATTATGTGGAACTTTGGA
GTGGTCGGAATGATGTCCATCCATTGGCAGGGACCTCTGCGGTTGCAGCA
AGGATATCTCATTTTTCGTGGCAGCCTTGATTGGCCTTGGTGT

BS17604.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG18803-PA 1626 Psn-RA 1..749 17..765 3720 99.8 Plus
CG18803-PB 1584 Psn-RB 1..749 17..765 3720 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-RE 1891 CG18803-RE 159..933 17..793 3820 99.6 Plus
Psn-RD 1879 CG18803-RD 189..963 17..793 3820 99.6 Plus
Psn-RC 1778 CG18803-RC 145..919 17..793 3820 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20433072..20433310 182..420 1195 100 Plus
3L 28110227 3L 20433378..20433587 421..630 1050 100 Plus
3L 28110227 3L 20432842..20433007 17..182 830 100 Plus
3L 28110227 3L 20433641..20433801 631..793 700 98.2 Plus
Blast to na_te.dros performed on 2015-02-10 17:23:09 has no hits.

BS17604.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:09:28 Download gff for BS17604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18803-PB 1..775 17..793 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:39:30 Download gff for BS17604.5prime
Subject Subject Range Query Range Percent Splice Strand
Psn-RC 140..919 9..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:09 Download gff for BS17604.5prime
Subject Subject Range Query Range Percent Splice Strand
Psn-RC 140..919 9..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:09 Download gff for BS17604.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20432837..20433006 9..181 97 -> Plus
3L 20433072..20433310 182..420 100 -> Plus
3L 20433378..20433587 421..630 100 -> Plus
3L 20433641..20433801 631..793 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:39:30 Download gff for BS17604.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20425937..20426106 9..181 97 -> Plus
arm_3L 20426172..20426410 182..420 100 -> Plus
arm_3L 20426478..20426687 421..630 100 -> Plus
arm_3L 20426741..20426901 631..793 98   Plus

BS17604.pep Sequence

Translation from 16 to 1641

> BS17604.pep
MAAVNLQASCSSGLASEDDANVGSQIGAAERLERPPRRQQQRNNYGSSNQ
DQPDAAILAVPNVVMREPCGSRPSRLTGGGGGSGGPPTNEMEEEQGLKYG
AQHVIKLFVPVSLCMLVVVATINSISFYNSTDVYLLYTPFHEQSPEPSVK
FWSALANSLILMSVVVVMTFLLIVLYKKRCYRIIHGWLILSSFMLLFIFT
YLYLEELLRAYNIPMDYPTALLIMWNFGVVGMMSIHWQGPLRLQQGYLIF
VAALMALVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRILVETAQER
NEQIFPALIYSSTVVYALVNTVTPQQSQATASSSPSSSNSTTTTRATQNS
LASPEAAAASGQRTGNSHPRQNQRDDGSVLATEGMPLVTFKSNLRGNAEA
AGFTQEWSANLSERVARRQIEVQSTQSGNAQRSNEYRTVTAPDQNHPDGQ
EERGIKLGLGDFIFYSVLVGKASSYGDWTTTIACFVAILIGLCLTLLLLA
IWRKALPALPISITFGLIFCFATSAVVKPFMEDLSAKQVFI*

BS17604.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-PE 541 CG18803-PE 1..541 1..541 2765 100 Plus
Psn-PA 541 CG18803-PA 1..541 1..541 2765 100 Plus
Psn-PD 527 CG18803-PD 1..527 1..541 2667 97.4 Plus
Psn-PB 527 CG18803-PB 1..527 1..541 2667 97.4 Plus
Psn-PC 508 CG18803-PC 1..508 1..541 2547 93.9 Plus