Clone Sequence Records
BS17605.complete Sequence
1466 bp assembled on 2009-12-07
GenBank Submission: KX800222
> BS17605.complete
GAAGTTATCAGTCGACATGAGCTTGAGCATTGTGAGTTACTATGGCAGCC
AGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGCAGCCTGTCGCAC
GGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCAGGACCTCATCGA
TCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGCTGCGCAACCAGG
AGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGCCTGGAGTTCAAG
CTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAATCGATTTTTGCG
CGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACGGTGACGGGGAAG
CCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACGGCCAGCGAACCG
CAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAATGTCGAGCAAGT
TGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGCAGGCAACTGCTG
CCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCCGCAGCACCGATC
TCAAACAAGCCGTGCAAGAAGGCCAAGCAGATGCGATTGGATCGACGGCT
GGCCAAGCTGGGAGACTCGGCCTCCTACTCAACGAAATCCCTTACCCAGG
AAAAGACACTTCGCGACTTCTTGAACACGGACAGCGAGACAAACAAACAT
CGGCTAAAGCTGCGCTTAATTCACGTCTACGACGACGAGTTCCGGCGGAC
CCTGCCCCAGAGTTTTGCGCTCTATAAGAAGTATCAGATATCGATACATA
ATGATCCGCCAAAGGATCAGGACGCGTACAAGGAGCATCTGCAGGCGACT
CCCCTACAGAATGAGAAACCCTGGGATGGTCCCGAAATGGGCTACGGTTC
GTTTCATCAGCAGTACTGGCTGGACGACAAGTTGATTGCCGTCGGCGTGA
TTGACATTCTGCCGGGTTGTGTAAGCTCGGTGTACTTTTTCTACGATCCG
GACTATAGCTTTTTATCGCTTGGCACATATGGTTCACTCAGGGAAATTGA
ATTGGTGCAGTCGCTCGCCGAGAAGGTGCCTTCTCTCAAGTATTACTATA
TGGGTTTCTACATACACTCCTGTCCCAAAATGCGCTACAAGGGCAAGTTG
TCCCCCTCTTACTTGCTGTGCCCGGAGACCTATGAATGGCTACCGCTCAC
CGATGTTATTCGTGCTAAGCTAGACGAACATAAATACCAGCGCTTAAACG
AAGATCCTGCAGCTAGGGATGTGAATGAGTTTTTGATGGAGCATTTGGAC
GAAGTTAAGCTGCTCTTGGGTGGAAGAACCCGCACAGACTACAAGCACTT
TAGGCAGCTGCGTGGGACCGTCTCCGATGACGATATCATTATTGAGTACA
GCAAGCTCGTGGGAAAAGAGTGTGCTCGGCGCATGCTATACGTGAAGTAA
AAGCTTTCTAGACCAT
BS17605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RA | 1434 | CG9204-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| Ate1-RB | 1455 | CG9204-PB | 1..1455 | 17..1450 | 6925 | 98.6 | Plus |
| Ate1-RC | 1437 | CG9204-PC | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RA | 1622 | CG9204-RA | 109..1543 | 17..1451 | 7175 | 100 | Plus |
| Ate1-RB | 1643 | CG9204-RB | 109..1564 | 17..1451 | 6930 | 98.6 | Plus |
| Ate1-RC | 1625 | CG9204-RC | 109..801 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20256690..20257125 | 536..101 | 2180 | 100 | Minus |
| 2R | 25286936 | 2R | 20255623..20255812 | 1046..857 | 935 | 99.5 | Minus |
| 2R | 25286936 | 2R | 20256431..20256608 | 714..537 | 875 | 99.4 | Minus |
| 2R | 25286936 | 2R | 20255408..20255574 | 1205..1039 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 20255197..20255349 | 1357..1205 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 20255886..20256037 | 859..708 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 20255045..20255141 | 1451..1355 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 20257196..20257282 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:45:31 has no hits.
BS17605.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:21 Download gff for
BS17605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 1..1434 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:17 Download gff for
BS17605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 100..1531 | 17..1448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:54 Download gff for
BS17605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 109..1540 | 17..1448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:21 Download gff for
BS17605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 100..1537 | 17..1456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:08 Download gff for
BS17605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 109..1540 | 17..1448 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:08 Download gff for
BS17605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20255048..20255138 | 1358..1448 | 100 | <- | Minus |
| 2R | 20255197..20255348 | 1206..1357 | 100 | <- | Minus |
| 2R | 20255408..20255571 | 1042..1205 | 100 | <- | Minus |
| 2R | 20255628..20255809 | 860..1041 | 100 | <- | Minus |
| 2R | 20255886..20256035 | 710..859 | 100 | <- | Minus |
| 2R | 20256436..20256608 | 537..709 | 100 | <- | Minus |
| 2R | 20256690..20257124 | 102..536 | 100 | <- | Minus |
| 2R | 20257198..20257282 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:54 Download gff for
BS17605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16144195..16144629 | 102..536 | 100 | <- | Minus |
| arm_2R | 16144703..16144787 | 17..101 | 100 | | Minus |
| arm_2R | 16142553..16142643 | 1358..1448 | 100 | <- | Minus |
| arm_2R | 16142702..16142853 | 1206..1357 | 100 | <- | Minus |
| arm_2R | 16142913..16143076 | 1042..1205 | 100 | <- | Minus |
| arm_2R | 16143133..16143314 | 860..1041 | 100 | <- | Minus |
| arm_2R | 16143391..16143540 | 710..859 | 100 | <- | Minus |
| arm_2R | 16143941..16144113 | 537..709 | 100 | <- | Minus |
BS17605.3prime Sequence
889 bp (816 high quality bases) assembled on 2007-05-29
> BS17605.3prime
ATGGTCTAGAAAGCTTTTACTTCACGTATAGCATGCGCCGAGCACACTCT
TTTCCCACGAGCTTGCTGTACTCAATAATGATATCGTCATCGGAGACGGT
CCCACGCAGCTGCCTAAAGTGCTTGTAGTCTGTGCGGGTTCTTCCACCCA
AGAGCAGCTTAACTTCGTCCAAATGCTCCATCAAAAACTCATTCACATCC
CTAGCTGCAGGATCTTCGTTTAAGCGCTGGTATTTATGTTCGTCTAGCTT
AGCACGAATAACATCGGTGAGCGGTAGCCATTCATAGGTCTCCGGGCACA
GCAAGTAAGAGGGGGACAACTTGCCCTTGTAGCGCATTTTGGGACAGGAG
TGTATGTAGAAACCCATATAGTAATACTTGAGAGAAGGCACCTTCTCGGC
GAGCGACTGCACCAATTCAATTTCCCTGAGTGAACCATATGTGCCAAGCG
ATAAAAAGCTATAGTCCGGATCGTAGAAAAAGTACACCGAGCTTACACAA
CCCGGCAGAATGTCAATCACGCCGACGGCAATCAACTTGTCGTCCAGCCA
GTACTGCTGATGAAACGAACCGTAGCCCATTTCGGGACCATCCCAGGGTT
TCTCATTCTGTAGGGGAGTCGCCTGCAGATGCTCCTTGTACGCGTCCTGA
TCCTTTGGCGGATCATTATGTATCGATATCTGATACTTCTTATAGAGCGC
AAAACTCTGGGGCAGGGTCCGCCGGAACTCGTCGTCGTAGACGTGAATTA
AGCGCAGCTTTAGCCGATGTTTGTTTGTCTCGCTGTCCGTGTTCAAGAAG
TCGCGAAGTGTCTTTTCCTGAGTAAGGGATTTCGTTGAGTAGGAGGCCGA
GTCTCCCAGCTTGGCCAGCCGTCGATCCAATCGCATCTG
BS17605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9204-PA | 1434 | Ate1-RA | 562..1434 | 889..17 | 4340 | 99.8 | Minus |
| CG9204-PB | 1455 | Ate1-RB | 583..1455 | 889..17 | 4340 | 99.8 | Minus |
| CG9204-PC | 1437 | Ate1-RC | 845..1437 | 609..17 | 2965 | 100 | Minus |
| CG9204-PC | 1437 | Ate1-RC | 562..693 | 889..758 | 635 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 13:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RB | 1643 | CG9204-RB | 691..1564 | 889..16 | 4355 | 99.9 | Minus |
| Ate1-RA | 1622 | CG9204-RA | 670..1543 | 889..16 | 4355 | 99.9 | Minus |
| Ate1-RD | 1646 | CG9204-RD | 974..1567 | 609..16 | 2970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 13:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20255623..20255812 | 421..610 | 935 | 99.5 | Plus |
| 2R | 25286936 | 2R | 20255408..20255574 | 262..428 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 20255197..20255349 | 110..262 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 20255886..20256037 | 608..759 | 760 | 100 | Plus |
| 2R | 25286936 | 2R | 20256431..20256567 | 753..889 | 655 | 98.5 | Plus |
| 2R | 25286936 | 2R | 20255045..20255141 | 16..112 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 13:46:56 has no hits.
BS17605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:09:35 Download gff for
BS17605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9204-PB | 583..1455 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:15 Download gff for
BS17605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 670..1546 | 11..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:14:42 Download gff for
BS17605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 670..1546 | 11..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:14:42 Download gff for
BS17605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20255042..20255138 | 11..109 | 97 | <- | Plus |
| 2R | 20255197..20255348 | 110..261 | 100 | <- | Plus |
| 2R | 20255408..20255571 | 262..425 | 100 | <- | Plus |
| 2R | 20255628..20255809 | 426..607 | 100 | <- | Plus |
| 2R | 20255886..20256035 | 608..757 | 100 | <- | Plus |
| 2R | 20256436..20256567 | 758..889 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:15 Download gff for
BS17605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16142547..16142643 | 11..109 | 97 | <- | Plus |
| arm_2R | 16142702..16142853 | 110..261 | 100 | <- | Plus |
| arm_2R | 16142913..16143076 | 262..425 | 100 | <- | Plus |
| arm_2R | 16143133..16143314 | 426..607 | 100 | <- | Plus |
| arm_2R | 16143391..16143540 | 608..757 | 100 | <- | Plus |
| arm_2R | 16143941..16144072 | 758..889 | 99 | | Plus |
BS17605.5prime Sequence
806 bp (784 high quality bases) assembled on 2007-05-29
> BS17605.5prime
GAAGTTATCAGTCGACATGAGCTTGAGCATTGTGAGTTACTATGGCAGCC
AGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGCAGCCTGTCGCAC
GGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCAGGACCTCATCGA
TCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGCTGCGCAACCAGG
AGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGCCTGGAGTTCAAG
CTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAATCGATTTTTGCG
CGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACGGTGACGGGGAAG
CCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACGGCCAGCGAACCG
CAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAATGTCGAGCAAGT
TGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGCAGGCAACTGCTG
CCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCCGCAGCACCGATC
TCAAACAAGCCGTGCAAGAAGGCCAAGCAGATGCGATTGGATCGACGGCT
GGCCAAGCTGGGAGACTCGGCCTCCTACTCAACGAAATCCCTTACCCAGG
AAAAGACACTTCGCGACTTCTTGAACACGGACAGCGAGACAAACAAACAT
CGGCTAAAGCTGCGCTTAATTCACGTCTACGACGACGAGTTCCGGCGGAC
CCTGCCCCAGAGTTTTGCGCTCTATAAGAAGTATCAGATATCGATACATA
ATGATC
BS17605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9204-PA | 1434 | Ate1-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
| CG9204-PC | 1437 | Ate1-RC | 1..693 | 17..709 | 3465 | 100 | Plus |
| CG9204-PB | 1455 | Ate1-RB | 1..521 | 17..537 | 2605 | 100 | Plus |
| CG9204-PB | 1455 | Ate1-RB | 542..811 | 537..806 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RA | 1622 | CG9204-RA | 109..898 | 17..806 | 3950 | 100 | Plus |
| Ate1-RB | 1643 | CG9204-RB | 109..919 | 17..806 | 3730 | 97.4 | Plus |
| Ate1-RC | 1625 | CG9204-RC | 109..801 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20256690..20257125 | 536..101 | 2180 | 100 | Minus |
| 2R | 25286936 | 2R | 20256431..20256608 | 714..537 | 875 | 99.4 | Minus |
| 2R | 25286936 | 2R | 20255939..20256037 | 806..708 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 20257196..20257282 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:59:29 has no hits.
BS17605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:09:40 Download gff for
BS17605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9204-PA | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:08:24 Download gff for
BS17605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 109..898 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:42 Download gff for
BS17605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 109..898 | 17..806 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:42 Download gff for
BS17605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20257198..20257282 | 17..101 | 100 | | Minus |
| 2R | 20255939..20256035 | 710..806 | 100 | <- | Minus |
| 2R | 20256436..20256608 | 537..709 | 100 | <- | Minus |
| 2R | 20256690..20257124 | 102..536 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:08:24 Download gff for
BS17605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16143444..16143540 | 710..806 | 100 | <- | Minus |
| arm_2R | 16143941..16144113 | 537..709 | 100 | <- | Minus |
| arm_2R | 16144195..16144629 | 102..536 | 100 | <- | Minus |
| arm_2R | 16144703..16144787 | 17..101 | 100 | | Minus |
BS17605.pep Sequence
Translation from 16 to 1449
> BS17605.pep
MSLSIVSYYGSQQSKCGYCAGANCSLSHGMHAYQLDCRDYQDLIDRGWRR
CGYYCYKLRNQETCCPCYTIKCNGLEFKLSKSNKRILRRINRFLRDGKRE
SKPEAGDGDGEADADYAIVAPEVTASEPQPQLPDKSPPVINVEQVASLAT
AQRKPTKQATAAAVEAPTLGSNKSAAPISNKPCKKAKQMRLDRRLAKLGD
SASYSTKSLTQEKTLRDFLNTDSETNKHRLKLRLIHVYDDEFRRTLPQSF
ALYKKYQISIHNDPPKDQDAYKEHLQATPLQNEKPWDGPEMGYGSFHQQY
WLDDKLIAVGVIDILPGCVSSVYFFYDPDYSFLSLGTYGSLREIELVQSL
AEKVPSLKYYYMGFYIHSCPKMRYKGKLSPSYLLCPETYEWLPLTDVIRA
KLDEHKYQRLNEDPAARDVNEFLMEHLDEVKLLLGGRTRTDYKHFRQLRG
TVSDDDIIIEYSKLVGKECARRMLYVK*
BS17605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-PA | 477 | CG9204-PA | 1..477 | 1..477 | 2548 | 100 | Plus |
| Ate1-PB | 484 | CG9204-PB | 1..484 | 1..477 | 2530 | 98.6 | Plus |
| Ate1-PC | 478 | CG9204-PC | 1..478 | 1..477 | 2338 | 92.9 | Plus |
| Ate1-PD | 485 | CG9204-PD | 1..485 | 1..477 | 2320 | 91.6 | Plus |
