Clone Sequence Records
BS17608.complete Sequence
1670 bp assembled on 2009-12-07
GenBank Submission: KX804289
> BS17608.complete
GAAGTTATCAGTCGACATGTCCAATATGGATCCAAGTGATGTCCGCAGTA
CCGCCCAGCTCATCCTGGCCAACGCTCGGCAGGGAAATAGCGCTTACAAC
ATGCAGTATGATATGTCACGGGCACATTCCATAAACCTGATTACGGAGGA
CTTCTTGGCCGGTTATATGCAGGATGGCAGGATGTCCGTGGTTCGAAGGT
TTTTCTGCCTCTTCGTCACATTCGACTTGGTCTTCGTTTCGCTGCTGTGG
CTCATTTGCATTGTGATCAATGGAGACAATATATTCACTGCCTTCCACAA
ACAAATCGTGGAGTACACCATCTACAAATCGCTCTTTGATGTTGTGGCAG
TCGCTATCTGCCGATTTTTGGTGCTCATATTTTTCTACGCCATATTGTAC
ATCAATCACTGGTCCATCATAGCGCTCTCTACAAGTGGGTCTTGCTTGTT
CCTCATCTCGAAGGTGTTTGTGTTCGATTGGCTGGATTCAAAGCAGCAGG
TATTTGAGGTAATCCTCATAATAACCTCGTTCATACTGGCTTGGGGAGAA
GCCTGGTTCCTGGACTGTAGGGTGATTCCTCAAGAGCGACATGCCCAACA
CTATTTCCGGACTATGACTTCAAATGATCGCACACCCATGGAACAGCCTG
CCATTTTGATTGAGCAAGAACGGCCTCCGCAAAGTGTAACCGATTTTTAT
TCACTCATGGACACGGCTCGTCATTCCGACGAGGAGGATGAGTTGGATGA
TGAGTACACACAAATGGGATTGGATTGCCTTCGAAAGGCCTACGAGATCA
TCGAGTCAAGTGACTGGAAGGTGGAAAAAGTTAACCAGAAAGGCGACACC
ATACACAGCACTCAGCGCGACAAGATTGGAAAGATCTACAAGTTGACGGC
CCGCATCAAGTATCCTGCAAAGGCTCTGATGGAAGATCTGTTCTATCGCA
TTGAAGACTGTCCCAAGTGGAATCCTGCTCTTTTGGAGTCCAAGATAGTA
CGCAAAATCAACTCCTACACCGATATTACCTATCAGGTATCCGTGGGCGG
AGGAGGTGGCATGGTGAAGAGCCGCGACTTCGTGAACTTGCGGTCTTGTA
GGCTCTTTTACAATGGTCAAATCTGCGATGACGATGAGACGGCTCAGCTC
AGCAGCGATGATGGGAACAGCAGTCTAAATCGGTCTTGCGAGGGTAGTGT
TAGTACCATTTCCGATGGTGACTCAAACACCCCACTGCTGCCCAGTAGCG
TGTCTAGTTGCAAGGCAACGTTTCCCACTTCATCCAAGGGAGCCGCTATG
CCTTTTGACACCCTGGGCAACAGCTTGGGCGCCAAGAGCCTAGGTCCCAT
CGTGAACTTTGACGAGGAGCCACCGCCATTGGATCAGGACGAGTTCGAGG
ATGCTAAGGACAAGGTCGACGGCGAAGCGAATAACATGACGAAACCAAAT
GTACCCAGCGTGGGAAAAACCAAGGACAGGGTTTGGGTCACTTCGGCGGT
TAGTGTGCAATATGCTGCCGTTCCACCTTCACCCAAATACACAAGTCGGT
TGACTCTTCAATTTTCAGAGGGCAGAACATTGTCAGTGGGTTTGCGTTTC
GTGAAATCGTTGGAAAATCGGATAGCTGCATTGTGGAGTGGGTGCTTTGC
CTAGAAGCTTTCTAGACCAT
BS17608.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Start1-RB | 1638 | CG3522-PB | 1..1638 | 17..1654 | 8190 | 100 | Plus |
Start1-RC | 1752 | CG3522-PC | 1..1529 | 17..1545 | 7645 | 100 | Plus |
Start1-RA | 1752 | CG3522-PA | 1..1529 | 17..1545 | 7645 | 100 | Plus |
Start1-RC | 1752 | CG3522-PC | 1528..1616 | 1567..1655 | 445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Start1-RB | 2360 | CG3522-RB | 369..2012 | 12..1655 | 8205 | 99.9 | Plus |
Start1-RC | 2337 | CG3522-RC | 369..1902 | 12..1545 | 7655 | 99.9 | Plus |
Start1-RA | 2170 | CG3522-RA | 202..1735 | 12..1545 | 7655 | 99.9 | Plus |
Start1-RC | 2337 | CG3522-RC | 1901..1989 | 1567..1655 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24576566..24577107 | 1004..1545 | 2710 | 100 | Plus |
2R | 25286936 | 2R | 24575361..24575520 | 265..424 | 800 | 100 | Plus |
2R | 25286936 | 2R | 24576193..24576347 | 745..899 | 775 | 100 | Plus |
2R | 25286936 | 2R | 24575151..24575299 | 117..265 | 745 | 100 | Plus |
2R | 25286936 | 2R | 24575877..24576011 | 612..746 | 675 | 100 | Plus |
2R | 25286936 | 2R | 24575691..24575823 | 479..611 | 665 | 100 | Plus |
2R | 25286936 | 2R | 24577151..24577262 | 1544..1655 | 560 | 100 | Plus |
2R | 25286936 | 2R | 24576400..24576505 | 898..1003 | 530 | 100 | Plus |
2R | 25286936 | 2R | 24574985..24575089 | 12..116 | 510 | 99 | Plus |
2R | 25286936 | 2R | 24575575..24575629 | 424..478 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:45:19 has no hits.
BS17608.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:22 Download gff for
BS17608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 1..1638 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:16 Download gff for
BS17608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 356..1993 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:49 Download gff for
BS17608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 374..2011 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:23 Download gff for
BS17608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 344..1997 | 6..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:04 Download gff for
BS17608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 374..2011 | 17..1654 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:04 Download gff for
BS17608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24576194..24576346 | 746..898 | 100 | -> | Plus |
2R | 24576401..24576505 | 899..1003 | 100 | -> | Plus |
2R | 24575151..24575299 | 117..265 | 100 | -> | Plus |
2R | 24575362..24575520 | 266..424 | 100 | -> | Plus |
2R | 24575576..24575629 | 425..478 | 100 | -> | Plus |
2R | 24575691..24575823 | 479..611 | 100 | -> | Plus |
2R | 24575877..24576010 | 612..745 | 100 | -> | Plus |
2R | 24574990..24575089 | 17..116 | 100 | -> | Plus |
2R | 24576566..24577107 | 1004..1545 | 100 | -> | Plus |
2R | 24577153..24577261 | 1546..1654 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:49 Download gff for
BS17608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20462885..20463043 | 266..424 | 100 | -> | Plus |
arm_2R | 20463099..20463152 | 425..478 | 100 | -> | Plus |
arm_2R | 20463214..20463346 | 479..611 | 100 | -> | Plus |
arm_2R | 20463400..20463533 | 612..745 | 100 | -> | Plus |
arm_2R | 20463717..20463869 | 746..898 | 100 | -> | Plus |
arm_2R | 20463924..20464028 | 899..1003 | 100 | -> | Plus |
arm_2R | 20462674..20462822 | 117..265 | 100 | -> | Plus |
arm_2R | 20462513..20462612 | 17..116 | 100 | -> | Plus |
arm_2R | 20464089..20464630 | 1004..1545 | 100 | -> | Plus |
arm_2R | 20464676..20464784 | 1546..1654 | 100 | | Plus |
BS17608.3prime Sequence
890 bp (742 high quality bases) assembled on 2007-05-29
> BS17608.3prime
ATGGTCTAGAAAGCTTCTAGGCAAAGCACCCACTCCACAATGCAGCTATC
CGATTTTCCAACGATTTCACGAAACGCAAACCCACTGACAATGTTCTGCC
CTCTGAAAATTGAAGAGTCAACCGACTTGTGTATTTGGGTGAAGGTGGAA
CGGCAGCATATTGCACACTAACCGCCGAAGTGACCCAAACCCTGTCCTTG
GTTTTTCCCACGCTGGGTACATTTGGTTTCGTCATGTTATTCGCTTCGCC
GTCGACCTTGTCCTTAGCATCCTCGAACTCGTCCTGATCCAATGGCGGTG
GCTCCTCGTCAAAGTTCACGATGGGACCTAGGCTCTTGGCGCCCAAGCTG
TTGCCCAGGGTGTCAAAAGGCATAGCGGCTCCCTTGGATGAAGTGGGAAA
CGTTGCCTTGCAACTAGACACGCTACTGGGCAGCAGTGGGGTGTTTGAGT
CACCATCGGAAATGGTACTAACACTACCCTCGCAAGACCGATTTAGACTG
CTGTTCCCATCATCGCTGCTGAGCTGAGCCGTCTCATCGTCATCGCAGAT
TTGACCATTGTAAAAGAGCCTACAAGACCGCAAGTTCACGAAGTCGCGGC
TCTTCACCATGCCACCTCCTCCGCCCACGGATACCTGATAGGTAATATCG
GTGTAGGAGTTGATTTTGCGTACTATCTTGGACTCCAAAAGAGCAGGATT
CCACTTGGGACAGTCTTCAATGCGATAGAACAGATCTTCCATCAGAGCCT
TTGCAGGATACTTGATGCGGGCCGTCAACTTGTAGATCTTTCCAATCTTG
TCGCGCTGAGTGCTGTGTATGGTGTCGCCTTTCTGGTTAACTTTTTTCAC
CTTCCAGTCACTTGACTCGATGATCTCGTAGGCCTTTCGA
BS17608.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3522-PB | 1638 | Start1-RB | 765..1638 | 890..17 | 4345 | 99.8 | Minus |
CG3522-PA | 1752 | Start1-RA | 765..1529 | 890..126 | 3800 | 99.8 | Minus |
CG3522-PA | 1752 | Start1-RA | 1528..1616 | 104..16 | 445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Start1-RB | 2360 | CG3522-RB | 1138..2012 | 890..16 | 4360 | 99.9 | Minus |
Start1-RD | 1270 | CG3522-RD | 71..922 | 890..16 | 4005 | 97.3 | Minus |
Start1-RC | 2337 | CG3522-RC | 1138..1989 | 890..16 | 4005 | 97.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24576566..24577107 | 667..126 | 2710 | 100 | Minus |
2R | 25286936 | 2R | 24576229..24576347 | 890..772 | 580 | 99.2 | Minus |
2R | 25286936 | 2R | 24577151..24577262 | 127..16 | 560 | 100 | Minus |
2R | 25286936 | 2R | 24576400..24576505 | 773..668 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:46:54 has no hits.
BS17608.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:10:11 Download gff for
BS17608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3522-PB | 766..1638 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:01:19 Download gff for
BS17608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 1139..2015 | 12..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:22 Download gff for
BS17608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 1139..2015 | 12..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:22 Download gff for
BS17608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24576230..24576346 | 773..889 | 99 | -> | Minus |
2R | 24576401..24576505 | 668..772 | 100 | -> | Minus |
2R | 24576566..24577107 | 126..667 | 100 | -> | Minus |
2R | 24577153..24577265 | 12..125 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:01:19 Download gff for
BS17608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20463753..20463869 | 773..889 | 99 | -> | Minus |
arm_2R | 20463924..20464028 | 668..772 | 100 | -> | Minus |
arm_2R | 20464089..20464630 | 126..667 | 100 | -> | Minus |
arm_2R | 20464676..20464788 | 12..125 | 98 | | Minus |
BS17608.5prime Sequence
871 bp (729 high quality bases) assembled on 2007-05-29
> BS17608.5prime
GAAGTTATCAGTCGACATGTCCAATATGGATCCAAGTGATGTCCGCAGTA
CCGCCCAGCTCATCCTGGCCAACGCTCGGCAGGGAAATAGCGCTTACAAC
ATGCAGTATGATATGTCACGGGCACATTCCATAAACCTGATTACGGAGGA
CTTCTTGGCCGGTTATATGCAGGATGGCAGGATGTCCGTGGTTCGAAGGT
TTTTCTGCCTCTTCGTCACATTCGACTTGGTCTTCGTTTCGCTGCTGTGG
CTCATTTGCATTGTGATCAATGGAGACAATATATTCACTGCCTTCCACAA
ACAAATCGTGGAGTACACCATCTACAAATCGCTCTTTGATGTTGTGGCAG
TCGCTATCTGCCGATTTTTGGTGCTCATATTTTTCTACGCCATATTGTAC
ATCAATCACTGGTCCATCATAGCGCTCTCTACAAGTGGGTCTTGCTTGTT
CCTCATCTCGAAGGTGTTTGTGTTCGATTGGCTGGATTCAAAGCAGCAGG
TATTTGAGGTAATCCTCATAATAACCTCGTTCATACTGGCTTGGGGAGAA
GCCTGGTTCCTGGACTGTAGGGTGATTCCTCAAGAGCGACATGCCCAACA
CTATTTCCGGACTATGACTTCAAATGATCGCACACCCATGGAACAGCCTG
CCATTTTGATTGAGCAAGAACGGCCTCCGCAAAGTGTAACCGATTTTTAT
TCACTCATGGACACGGCTCGTCATTCCGACGAGGAGGATGAGTTGGATGA
TGAGTACACACAAATGGGATTGGATTGCCTTCGAAAGGCCTACGAGATCA
TCGAGTCAAGTGACTGGAAGGTGGAAAAAGTTAACCAAAAAGCGACACCA
TACACAGCACTCAGCGCGACA
BS17608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3522-PB | 1638 | Start1-RB | 1..821 | 17..837 | 4105 | 100 | Plus |
CG3522-PA | 1752 | Start1-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
CG3522-PB | 1638 | Start1-RB | 827..856 | 842..871 | 150 | 100 | Plus |
CG3522-PA | 1752 | Start1-RA | 827..856 | 842..871 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Start1-RC | 2337 | CG3522-RC | 369..1229 | 12..871 | 4250 | 99.7 | Plus |
Start1-RA | 2170 | CG3522-RA | 202..1062 | 12..871 | 4250 | 99.7 | Plus |
Start1-RB | 2360 | CG3522-RB | 369..1229 | 12..871 | 4250 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24575361..24575520 | 265..424 | 800 | 100 | Plus |
2R | 25286936 | 2R | 24575151..24575299 | 117..265 | 745 | 100 | Plus |
2R | 25286936 | 2R | 24575877..24576011 | 612..746 | 675 | 100 | Plus |
2R | 25286936 | 2R | 24575691..24575823 | 479..611 | 665 | 100 | Plus |
2R | 25286936 | 2R | 24576193..24576320 | 745..871 | 575 | 98.4 | Plus |
2R | 25286936 | 2R | 24574985..24575089 | 12..116 | 510 | 99 | Plus |
2R | 25286936 | 2R | 24575575..24575629 | 424..478 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:41:47 has no hits.
BS17608.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:10:17 Download gff for
BS17608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3522-PA | 1..855 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:16 Download gff for
BS17608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 362..1228 | 6..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:08:40 Download gff for
BS17608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 362..1228 | 6..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:08:40 Download gff for
BS17608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24574978..24575089 | 6..116 | 96 | -> | Plus |
2R | 24575151..24575299 | 117..265 | 100 | -> | Plus |
2R | 24575362..24575520 | 266..424 | 100 | -> | Plus |
2R | 24575576..24575629 | 425..478 | 100 | -> | Plus |
2R | 24575691..24575823 | 479..611 | 100 | -> | Plus |
2R | 24575877..24576010 | 612..745 | 100 | -> | Plus |
2R | 24576194..24576319 | 746..870 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:16 Download gff for
BS17608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20462501..20462612 | 6..116 | 96 | -> | Plus |
arm_2R | 20462674..20462822 | 117..265 | 100 | -> | Plus |
arm_2R | 20462885..20463043 | 266..424 | 100 | -> | Plus |
arm_2R | 20463099..20463152 | 425..478 | 100 | -> | Plus |
arm_2R | 20463214..20463346 | 479..611 | 100 | -> | Plus |
arm_2R | 20463400..20463533 | 612..745 | 100 | -> | Plus |
arm_2R | 20463717..20463842 | 746..870 | 98 | | Plus |
BS17608.pep Sequence
Translation from 16 to 1653
> BS17608.pep
MSNMDPSDVRSTAQLILANARQGNSAYNMQYDMSRAHSINLITEDFLAGY
MQDGRMSVVRRFFCLFVTFDLVFVSLLWLICIVINGDNIFTAFHKQIVEY
TIYKSLFDVVAVAICRFLVLIFFYAILYINHWSIIALSTSGSCLFLISKV
FVFDWLDSKQQVFEVILIITSFILAWGEAWFLDCRVIPQERHAQHYFRTM
TSNDRTPMEQPAILIEQERPPQSVTDFYSLMDTARHSDEEDELDDEYTQM
GLDCLRKAYEIIESSDWKVEKVNQKGDTIHSTQRDKIGKIYKLTARIKYP
AKALMEDLFYRIEDCPKWNPALLESKIVRKINSYTDITYQVSVGGGGGMV
KSRDFVNLRSCRLFYNGQICDDDETAQLSSDDGNSSLNRSCEGSVSTISD
GDSNTPLLPSSVSSCKATFPTSSKGAAMPFDTLGNSLGAKSLGPIVNFDE
EPPPLDQDEFEDAKDKVDGEANNMTKPNVPSVGKTKDRVWVTSAVSVQYA
AVPPSPKYTSRLTLQFSEGRTLSVGLRFVKSLENRIAALWSGCFA*
BS17608.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Start1-PB | 545 | CG3522-PB | 1..545 | 1..545 | 2842 | 100 | Plus |
Start1-PC | 583 | CG3522-PC | 1..509 | 1..509 | 2662 | 100 | Plus |
Start1-PA | 583 | CG3522-PA | 1..509 | 1..509 | 2662 | 100 | Plus |
Start1-PD | 343 | CG3522-PD | 4..269 | 244..509 | 1398 | 100 | Plus |