Clone BS17608 Report

Search the DGRC for BS17608

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptStart1-RB
Protein status:BS17608.pep: full length peptide match
Sequenced Size:1670

Clone Sequence Records

BS17608.complete Sequence

1670 bp assembled on 2009-12-07

GenBank Submission: KX804289

> BS17608.complete
GAAGTTATCAGTCGACATGTCCAATATGGATCCAAGTGATGTCCGCAGTA
CCGCCCAGCTCATCCTGGCCAACGCTCGGCAGGGAAATAGCGCTTACAAC
ATGCAGTATGATATGTCACGGGCACATTCCATAAACCTGATTACGGAGGA
CTTCTTGGCCGGTTATATGCAGGATGGCAGGATGTCCGTGGTTCGAAGGT
TTTTCTGCCTCTTCGTCACATTCGACTTGGTCTTCGTTTCGCTGCTGTGG
CTCATTTGCATTGTGATCAATGGAGACAATATATTCACTGCCTTCCACAA
ACAAATCGTGGAGTACACCATCTACAAATCGCTCTTTGATGTTGTGGCAG
TCGCTATCTGCCGATTTTTGGTGCTCATATTTTTCTACGCCATATTGTAC
ATCAATCACTGGTCCATCATAGCGCTCTCTACAAGTGGGTCTTGCTTGTT
CCTCATCTCGAAGGTGTTTGTGTTCGATTGGCTGGATTCAAAGCAGCAGG
TATTTGAGGTAATCCTCATAATAACCTCGTTCATACTGGCTTGGGGAGAA
GCCTGGTTCCTGGACTGTAGGGTGATTCCTCAAGAGCGACATGCCCAACA
CTATTTCCGGACTATGACTTCAAATGATCGCACACCCATGGAACAGCCTG
CCATTTTGATTGAGCAAGAACGGCCTCCGCAAAGTGTAACCGATTTTTAT
TCACTCATGGACACGGCTCGTCATTCCGACGAGGAGGATGAGTTGGATGA
TGAGTACACACAAATGGGATTGGATTGCCTTCGAAAGGCCTACGAGATCA
TCGAGTCAAGTGACTGGAAGGTGGAAAAAGTTAACCAGAAAGGCGACACC
ATACACAGCACTCAGCGCGACAAGATTGGAAAGATCTACAAGTTGACGGC
CCGCATCAAGTATCCTGCAAAGGCTCTGATGGAAGATCTGTTCTATCGCA
TTGAAGACTGTCCCAAGTGGAATCCTGCTCTTTTGGAGTCCAAGATAGTA
CGCAAAATCAACTCCTACACCGATATTACCTATCAGGTATCCGTGGGCGG
AGGAGGTGGCATGGTGAAGAGCCGCGACTTCGTGAACTTGCGGTCTTGTA
GGCTCTTTTACAATGGTCAAATCTGCGATGACGATGAGACGGCTCAGCTC
AGCAGCGATGATGGGAACAGCAGTCTAAATCGGTCTTGCGAGGGTAGTGT
TAGTACCATTTCCGATGGTGACTCAAACACCCCACTGCTGCCCAGTAGCG
TGTCTAGTTGCAAGGCAACGTTTCCCACTTCATCCAAGGGAGCCGCTATG
CCTTTTGACACCCTGGGCAACAGCTTGGGCGCCAAGAGCCTAGGTCCCAT
CGTGAACTTTGACGAGGAGCCACCGCCATTGGATCAGGACGAGTTCGAGG
ATGCTAAGGACAAGGTCGACGGCGAAGCGAATAACATGACGAAACCAAAT
GTACCCAGCGTGGGAAAAACCAAGGACAGGGTTTGGGTCACTTCGGCGGT
TAGTGTGCAATATGCTGCCGTTCCACCTTCACCCAAATACACAAGTCGGT
TGACTCTTCAATTTTCAGAGGGCAGAACATTGTCAGTGGGTTTGCGTTTC
GTGAAATCGTTGGAAAATCGGATAGCTGCATTGTGGAGTGGGTGCTTTGC
CTAGAAGCTTTCTAGACCAT

BS17608.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Start1-RB 1638 CG3522-PB 1..1638 17..1654 8190 100 Plus
Start1-RC 1752 CG3522-PC 1..1529 17..1545 7645 100 Plus
Start1-RA 1752 CG3522-PA 1..1529 17..1545 7645 100 Plus
Start1-RC 1752 CG3522-PC 1528..1616 1567..1655 445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Start1-RB 2360 CG3522-RB 369..2012 12..1655 8205 99.9 Plus
Start1-RC 2337 CG3522-RC 369..1902 12..1545 7655 99.9 Plus
Start1-RA 2170 CG3522-RA 202..1735 12..1545 7655 99.9 Plus
Start1-RC 2337 CG3522-RC 1901..1989 1567..1655 445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24576566..24577107 1004..1545 2710 100 Plus
2R 25286936 2R 24575361..24575520 265..424 800 100 Plus
2R 25286936 2R 24576193..24576347 745..899 775 100 Plus
2R 25286936 2R 24575151..24575299 117..265 745 100 Plus
2R 25286936 2R 24575877..24576011 612..746 675 100 Plus
2R 25286936 2R 24575691..24575823 479..611 665 100 Plus
2R 25286936 2R 24577151..24577262 1544..1655 560 100 Plus
2R 25286936 2R 24576400..24576505 898..1003 530 100 Plus
2R 25286936 2R 24574985..24575089 12..116 510 99 Plus
2R 25286936 2R 24575575..24575629 424..478 275 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:45:19 has no hits.

BS17608.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:22 Download gff for BS17608.complete
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 1..1638 17..1654 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:16 Download gff for BS17608.complete
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 356..1993 17..1654 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:49 Download gff for BS17608.complete
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 374..2011 17..1654 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:23 Download gff for BS17608.complete
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 344..1997 6..1659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:04 Download gff for BS17608.complete
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 374..2011 17..1654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:04 Download gff for BS17608.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24576194..24576346 746..898 100 -> Plus
2R 24576401..24576505 899..1003 100 -> Plus
2R 24575151..24575299 117..265 100 -> Plus
2R 24575362..24575520 266..424 100 -> Plus
2R 24575576..24575629 425..478 100 -> Plus
2R 24575691..24575823 479..611 100 -> Plus
2R 24575877..24576010 612..745 100 -> Plus
2R 24574990..24575089 17..116 100 -> Plus
2R 24576566..24577107 1004..1545 100 -> Plus
2R 24577153..24577261 1546..1654 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:49 Download gff for BS17608.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20462885..20463043 266..424 100 -> Plus
arm_2R 20463099..20463152 425..478 100 -> Plus
arm_2R 20463214..20463346 479..611 100 -> Plus
arm_2R 20463400..20463533 612..745 100 -> Plus
arm_2R 20463717..20463869 746..898 100 -> Plus
arm_2R 20463924..20464028 899..1003 100 -> Plus
arm_2R 20462674..20462822 117..265 100 -> Plus
arm_2R 20462513..20462612 17..116 100 -> Plus
arm_2R 20464089..20464630 1004..1545 100 -> Plus
arm_2R 20464676..20464784 1546..1654 100   Plus

BS17608.3prime Sequence

890 bp (742 high quality bases) assembled on 2007-05-29

> BS17608.3prime
ATGGTCTAGAAAGCTTCTAGGCAAAGCACCCACTCCACAATGCAGCTATC
CGATTTTCCAACGATTTCACGAAACGCAAACCCACTGACAATGTTCTGCC
CTCTGAAAATTGAAGAGTCAACCGACTTGTGTATTTGGGTGAAGGTGGAA
CGGCAGCATATTGCACACTAACCGCCGAAGTGACCCAAACCCTGTCCTTG
GTTTTTCCCACGCTGGGTACATTTGGTTTCGTCATGTTATTCGCTTCGCC
GTCGACCTTGTCCTTAGCATCCTCGAACTCGTCCTGATCCAATGGCGGTG
GCTCCTCGTCAAAGTTCACGATGGGACCTAGGCTCTTGGCGCCCAAGCTG
TTGCCCAGGGTGTCAAAAGGCATAGCGGCTCCCTTGGATGAAGTGGGAAA
CGTTGCCTTGCAACTAGACACGCTACTGGGCAGCAGTGGGGTGTTTGAGT
CACCATCGGAAATGGTACTAACACTACCCTCGCAAGACCGATTTAGACTG
CTGTTCCCATCATCGCTGCTGAGCTGAGCCGTCTCATCGTCATCGCAGAT
TTGACCATTGTAAAAGAGCCTACAAGACCGCAAGTTCACGAAGTCGCGGC
TCTTCACCATGCCACCTCCTCCGCCCACGGATACCTGATAGGTAATATCG
GTGTAGGAGTTGATTTTGCGTACTATCTTGGACTCCAAAAGAGCAGGATT
CCACTTGGGACAGTCTTCAATGCGATAGAACAGATCTTCCATCAGAGCCT
TTGCAGGATACTTGATGCGGGCCGTCAACTTGTAGATCTTTCCAATCTTG
TCGCGCTGAGTGCTGTGTATGGTGTCGCCTTTCTGGTTAACTTTTTTCAC
CTTCCAGTCACTTGACTCGATGATCTCGTAGGCCTTTCGA

BS17608.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3522-PB 1638 Start1-RB 765..1638 890..17 4345 99.8 Minus
CG3522-PA 1752 Start1-RA 765..1529 890..126 3800 99.8 Minus
CG3522-PA 1752 Start1-RA 1528..1616 104..16 445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Start1-RB 2360 CG3522-RB 1138..2012 890..16 4360 99.9 Minus
Start1-RD 1270 CG3522-RD 71..922 890..16 4005 97.3 Minus
Start1-RC 2337 CG3522-RC 1138..1989 890..16 4005 97.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24576566..24577107 667..126 2710 100 Minus
2R 25286936 2R 24576229..24576347 890..772 580 99.2 Minus
2R 25286936 2R 24577151..24577262 127..16 560 100 Minus
2R 25286936 2R 24576400..24576505 773..668 530 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:46:54 has no hits.

BS17608.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:10:11 Download gff for BS17608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3522-PB 766..1638 17..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:01:19 Download gff for BS17608.3prime
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 1139..2015 12..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:22 Download gff for BS17608.3prime
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 1139..2015 12..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:22 Download gff for BS17608.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24576230..24576346 773..889 99 -> Minus
2R 24576401..24576505 668..772 100 -> Minus
2R 24576566..24577107 126..667 100 -> Minus
2R 24577153..24577265 12..125 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:01:19 Download gff for BS17608.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20463753..20463869 773..889 99 -> Minus
arm_2R 20463924..20464028 668..772 100 -> Minus
arm_2R 20464089..20464630 126..667 100 -> Minus
arm_2R 20464676..20464788 12..125 98   Minus

BS17608.5prime Sequence

871 bp (729 high quality bases) assembled on 2007-05-29

> BS17608.5prime
GAAGTTATCAGTCGACATGTCCAATATGGATCCAAGTGATGTCCGCAGTA
CCGCCCAGCTCATCCTGGCCAACGCTCGGCAGGGAAATAGCGCTTACAAC
ATGCAGTATGATATGTCACGGGCACATTCCATAAACCTGATTACGGAGGA
CTTCTTGGCCGGTTATATGCAGGATGGCAGGATGTCCGTGGTTCGAAGGT
TTTTCTGCCTCTTCGTCACATTCGACTTGGTCTTCGTTTCGCTGCTGTGG
CTCATTTGCATTGTGATCAATGGAGACAATATATTCACTGCCTTCCACAA
ACAAATCGTGGAGTACACCATCTACAAATCGCTCTTTGATGTTGTGGCAG
TCGCTATCTGCCGATTTTTGGTGCTCATATTTTTCTACGCCATATTGTAC
ATCAATCACTGGTCCATCATAGCGCTCTCTACAAGTGGGTCTTGCTTGTT
CCTCATCTCGAAGGTGTTTGTGTTCGATTGGCTGGATTCAAAGCAGCAGG
TATTTGAGGTAATCCTCATAATAACCTCGTTCATACTGGCTTGGGGAGAA
GCCTGGTTCCTGGACTGTAGGGTGATTCCTCAAGAGCGACATGCCCAACA
CTATTTCCGGACTATGACTTCAAATGATCGCACACCCATGGAACAGCCTG
CCATTTTGATTGAGCAAGAACGGCCTCCGCAAAGTGTAACCGATTTTTAT
TCACTCATGGACACGGCTCGTCATTCCGACGAGGAGGATGAGTTGGATGA
TGAGTACACACAAATGGGATTGGATTGCCTTCGAAAGGCCTACGAGATCA
TCGAGTCAAGTGACTGGAAGGTGGAAAAAGTTAACCAAAAAGCGACACCA
TACACAGCACTCAGCGCGACA

BS17608.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3522-PB 1638 Start1-RB 1..821 17..837 4105 100 Plus
CG3522-PA 1752 Start1-RA 1..821 17..837 4105 100 Plus
CG3522-PB 1638 Start1-RB 827..856 842..871 150 100 Plus
CG3522-PA 1752 Start1-RA 827..856 842..871 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Start1-RC 2337 CG3522-RC 369..1229 12..871 4250 99.7 Plus
Start1-RA 2170 CG3522-RA 202..1062 12..871 4250 99.7 Plus
Start1-RB 2360 CG3522-RB 369..1229 12..871 4250 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24575361..24575520 265..424 800 100 Plus
2R 25286936 2R 24575151..24575299 117..265 745 100 Plus
2R 25286936 2R 24575877..24576011 612..746 675 100 Plus
2R 25286936 2R 24575691..24575823 479..611 665 100 Plus
2R 25286936 2R 24576193..24576320 745..871 575 98.4 Plus
2R 25286936 2R 24574985..24575089 12..116 510 99 Plus
2R 25286936 2R 24575575..24575629 424..478 275 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:41:47 has no hits.

BS17608.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:10:17 Download gff for BS17608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3522-PA 1..855 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:16 Download gff for BS17608.5prime
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 362..1228 6..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:08:40 Download gff for BS17608.5prime
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 362..1228 6..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:08:40 Download gff for BS17608.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24574978..24575089 6..116 96 -> Plus
2R 24575151..24575299 117..265 100 -> Plus
2R 24575362..24575520 266..424 100 -> Plus
2R 24575576..24575629 425..478 100 -> Plus
2R 24575691..24575823 479..611 100 -> Plus
2R 24575877..24576010 612..745 100 -> Plus
2R 24576194..24576319 746..870 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:16 Download gff for BS17608.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20462501..20462612 6..116 96 -> Plus
arm_2R 20462674..20462822 117..265 100 -> Plus
arm_2R 20462885..20463043 266..424 100 -> Plus
arm_2R 20463099..20463152 425..478 100 -> Plus
arm_2R 20463214..20463346 479..611 100 -> Plus
arm_2R 20463400..20463533 612..745 100 -> Plus
arm_2R 20463717..20463842 746..870 98   Plus

BS17608.pep Sequence

Translation from 16 to 1653

> BS17608.pep
MSNMDPSDVRSTAQLILANARQGNSAYNMQYDMSRAHSINLITEDFLAGY
MQDGRMSVVRRFFCLFVTFDLVFVSLLWLICIVINGDNIFTAFHKQIVEY
TIYKSLFDVVAVAICRFLVLIFFYAILYINHWSIIALSTSGSCLFLISKV
FVFDWLDSKQQVFEVILIITSFILAWGEAWFLDCRVIPQERHAQHYFRTM
TSNDRTPMEQPAILIEQERPPQSVTDFYSLMDTARHSDEEDELDDEYTQM
GLDCLRKAYEIIESSDWKVEKVNQKGDTIHSTQRDKIGKIYKLTARIKYP
AKALMEDLFYRIEDCPKWNPALLESKIVRKINSYTDITYQVSVGGGGGMV
KSRDFVNLRSCRLFYNGQICDDDETAQLSSDDGNSSLNRSCEGSVSTISD
GDSNTPLLPSSVSSCKATFPTSSKGAAMPFDTLGNSLGAKSLGPIVNFDE
EPPPLDQDEFEDAKDKVDGEANNMTKPNVPSVGKTKDRVWVTSAVSVQYA
AVPPSPKYTSRLTLQFSEGRTLSVGLRFVKSLENRIAALWSGCFA*

BS17608.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Start1-PB 545 CG3522-PB 1..545 1..545 2842 100 Plus
Start1-PC 583 CG3522-PC 1..509 1..509 2662 100 Plus
Start1-PA 583 CG3522-PA 1..509 1..509 2662 100 Plus
Start1-PD 343 CG3522-PD 4..269 244..509 1398 100 Plus