Clone BS17618 Report

Search the DGRC for BS17618

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG3662-RA
Protein status:BS17618.pep: full length peptide match
Sequenced Size:992

Clone Sequence Records

BS17618.complete Sequence

992 bp assembled on 2010-02-09

GenBank Submission: KX803495

> BS17618.complete
GAAGTTATCAGTCGACATGACAATTCTGGGAAAACTGCGGGGACAGCCCA
CGGACCAGGAGAAGGTGCCCCTGCCCATGAACCTCAACGACGAGGCGCTC
ATGCACCATGGCTCCCTAATCGCACCCAAGGTTGCTTACAGCGATAATGA
AGCCGACGCGGAATCCATGGTCTTCAACCGGCCGCAGCACCATTGCATCA
AATCCTTTCTGCTGTTCCTGATCGCCGTAGTCGTGATGCTCCTGGGTGTC
CTGGGCGGATGGACCCTGTACCGAGTGTACGCTCCGTCGCATAGCAGCAT
GCGCTACCACGCCCTGTGCGAGATCCCCTATCCGGAGGACTCGATGGAGA
TGGCGCGGGTATATCCGCGCACCGTGGAACCGTTCGCCCTGAACTGGCGC
TCCTTGCTACCCGAGCTCGCGCAACCGATGCCCAACAGTGGATCGCTGGA
CGAGAGCCACTTCCGCGAGGACATCGAACTGGACGGTGACAGCGATGACG
AGGGCTACGCACGCGTGGACGTGCCCGACTTCAAGGATGGACGTCGTGGT
CGCTTCATGCACGACTTCAAGGAGAACCAGTCGGCCATTATCGACACTAC
CACCGGACGGTGCTTCATCATGCCCTTGGATCGGGACACGACCCTGCCCC
CGACCAGCTTTGTGGATCTCATAAAGAAGATGAGCACTGGCTACTACAAC
ATAGATACGGAGCGCGTGCGGCGCCAGATGCGTGTGGTCATGCCCCGCAT
CACCGATGTCTCGCTCATCTCGGAGCGGATTGCCAACGAGTGCTTCGATA
TGAAGGTCTACATGATGGAGAAGTTCGTCTCAGGCGTCTCGAAGAGATCG
GCTGATCCGCTGCCGGAGTCAGCCAAGTACGCCGAGTTCATGGGCAAGGG
CGTCATCGAGTACGACCTGGCCAACATCGCCGAGGTGGAGGCCTACGAGG
CCAACGAGGCTAGGCAACAGGCCTGAAAGCTTTCTAGACCAT

BS17618.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-RD 960 CG3662-PD 1..960 17..976 4800 100 Plus
CG3662-RC 960 CG3662-PC 1..960 17..976 4800 100 Plus
CG3662-RA 960 CG3662-PA 1..960 17..976 4800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-RD 1731 CG3662-RD 263..1223 16..976 4805 100 Plus
CG3662-RC 1570 CG3662-RC 130..1090 16..976 4805 100 Plus
CG3662-RA 1651 CG3662-RA 130..1090 16..976 4805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 822858..823569 125..836 3560 100 Plus
2L 23513712 2L 823636..823776 836..976 705 100 Plus
2L 23513712 2L 821551..821659 16..124 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:08:27 has no hits.

BS17618.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:24 Download gff for BS17618.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 1..960 17..976 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:34 Download gff for BS17618.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 135..1093 17..975 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:25 Download gff for BS17618.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 131..1089 17..975 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:24 Download gff for BS17618.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 130..1103 9..987 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:45 Download gff for BS17618.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 131..1089 17..975 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:45 Download gff for BS17618.complete
Subject Subject Range Query Range Percent Splice Strand
2L 821552..821659 17..124 100 -> Plus
2L 822858..823569 125..836 100 -> Plus
2L 823637..823775 837..975 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:25 Download gff for BS17618.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 821552..821659 17..124 100 -> Plus
arm_2L 822858..823569 125..836 100 -> Plus
arm_2L 823637..823775 837..975 100   Plus

BS17618.3prime Sequence

869 bp (797 high quality bases) assembled on 2007-05-29

> BS17618.3prime
ATGGTCTAGAAAGCTTTCAGGCCTGTTGCCTAGCCTCGTTGGCCTCGTAG
GCCTCCACCTCGGCGATGTTGGCCAGGTCGTACTCGATGACGCCCTTGCC
CATGAACTCGGCGTACTTGGCTGACTCCGGCAGCGGATCAGCCGATCTCT
TCGAGACGCCTGAGACGAACTTCTCCATCATGTAGACCTTCATATCGAAG
CACTCGTTGGCAATCCGCTCCGAGATGAGCGAGACATCGGTGATGCGGGG
CATGACCACACGCATCTGGCGCCGCACGCGCTCCGTATCTATGTTGTAGT
AGCCAGTGCTCATCTTCTTTATGAGATCCACAAAGCTGGTCGGGGGCAGG
GTCGTGTCCCGATCCAAGGGCATGATGAAGCACCGTCCGGTGGTAGTGTC
GATAATGGCCGACTGGTTCTCCTTGAAGTCGTGCATGAAGCGACCACGAC
GTCCATCCTTGAAGTCGGGCACGTCCACGCGTGCGTAGCCCTCGTCATCG
CTGTCACCGTCCAGTTCGATGTCCTCGCGGAAGTGGCTCTCGTCCAGCGA
TCCACTGTTGGGCATCGGTTGCGCGAGCTCGGGTAGCAAGGAGCGCCAGT
TCAGGGCGAACGGTTCCACGGTGCGCGGATATACCCGCGCCATCTCCATC
GAGTCCTCCGGATAGGGGATCTCGCACAGGGCGTGGTAGCGCATGCTGCT
ATGCGACGGAGCGTACACTCGGTACAGGGTCCATCCGCCCAGGACACCCA
GGAGCATCACGACTACGGCGATCAGGAACAGCAGAAAGGATTTGATGCAA
TGGTGCTGCGGCCGGTTGAAGACCATGGATTCCGCGTCGGCTCATTATCG
CTGTAAGCACCCTTGGGTG

BS17618.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-PA 960 CG3662-RA 135..960 842..17 4130 100 Minus
CG3662-PB 810 CG3662-RB 1..810 826..17 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-RD 1731 CG3662-RD 370..1223 869..17 4230 99.8 Minus
CG3662-RC 1570 CG3662-RC 237..1090 869..17 4230 99.8 Minus
CG3662-RA 1651 CG3662-RA 237..1090 869..17 4230 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 822858..823569 867..157 3495 99.7 Minus
2L 23513712 2L 823636..823776 157..17 705 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:12:33 has no hits.

BS17618.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:05 Download gff for BS17618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3662-PA 107..960 17..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:47:48 Download gff for BS17618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 237..1099 6..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:52 Download gff for BS17618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 237..1099 6..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:52 Download gff for BS17618.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 822855..823569 157..869 99 -> Minus
2L 823637..823785 6..156 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:47:48 Download gff for BS17618.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 822855..823569 157..869 99 -> Minus
arm_2L 823637..823785 6..156 97   Minus

BS17618.5prime Sequence

818 bp (773 high quality bases) assembled on 2007-05-29

> BS17618.5prime
GAAGTTATCAGTCGACATGACAATTCTGGGAAAACTGCGGGGACAGCCCA
CGGACCAGGAGAAGGTGCCCCTGCCCATGAACCTCAACGACGAGGCGCTC
ATGCACCATGGCTCCCTAATCGCACCCAAGGTTGCTTACAGCGATAATGA
AGCCGACGCGGAATCCATGGTCTTCAACCGGCCGCAGCACCATTGCATCA
AATCCTTTCTGCTGTTCCTGATCGCCGTAGTCGTGATGCTCCTGGGTGTC
CTGGGCGGATGGACCCTGTACCGAGTGTACGCTCCGTCGCATAGCAGCAT
GCGCTACCACGCCCTGTGCGAGATCCCCTATCCGGAGGACTCGATGGAGA
TGGCGCGGGTATATCCGCGCACCGTGGAACCGTTCGCCCTGAACTGGCGC
TCCTTGCTACCCGAGCTCGCGCAACCGATGCCCAACAGTGGATCGCTGGA
CGAGAGCCACTTCCGCGAGGACATCGAACTGGACGGTGACAGCGATGACG
AGGGCTACGCACGCGTGGACGTGCCCGACTTCAAGGATGGACGTCGTGGT
CGCTTCATGCACGACTTCAAGGAGAACCAGTCGGCCATTATCGACACTAC
CACCGGACGGTGCTTCATCATGCCCTTGGATCGGGACACGACCCTGCCCC
CGACCAGCTTTGTGGATCTCATAAAGAAGATGAGCACTGGCTACTACAAC
ATAGATACNGAGCGCGTGCGGCGCCAGATGCGTGTGGTCATGCCCCGCAT
CACCGATGTCTCGCTCATCTCGGAGCGGATTGCCAACGAGTGCTTCGATA
TGAAGGTCTACATGATGG

BS17618.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-PA 960 CG3662-RA 1..802 17..818 3991 99.8 Plus
CG3662-PB 810 CG3662-RB 1..652 167..818 3241 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 13:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-RD 1731 CG3662-RD 263..1065 16..818 4004 99.9 Plus
CG3662-RC 1570 CG3662-RC 130..932 16..818 4004 99.9 Plus
CG3662-RA 1651 CG3662-RA 130..932 16..818 4004 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 13:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 822858..823551 125..818 3459 99.9 Plus
2L 23513712 2L 821551..821659 16..124 545 100 Plus
Blast to na_te.dros performed on 2015-02-05 13:47:52 has no hits.

BS17618.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:10 Download gff for BS17618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3662-PA 1..802 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:23 Download gff for BS17618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 126..932 9..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:14:50 Download gff for BS17618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 126..932 9..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:14:50 Download gff for BS17618.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 821547..821659 9..124 97 -> Plus
2L 822858..823551 125..818 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:23 Download gff for BS17618.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 821547..821659 9..124 97 -> Plus
arm_2L 822858..823551 125..818 99   Plus

BS17618.pep Sequence

Translation from 16 to 975

> BS17618.pep
MTILGKLRGQPTDQEKVPLPMNLNDEALMHHGSLIAPKVAYSDNEADAES
MVFNRPQHHCIKSFLLFLIAVVVMLLGVLGGWTLYRVYAPSHSSMRYHAL
CEIPYPEDSMEMARVYPRTVEPFALNWRSLLPELAQPMPNSGSLDESHFR
EDIELDGDSDDEGYARVDVPDFKDGRRGRFMHDFKENQSAIIDTTTGRCF
IMPLDRDTTLPPTSFVDLIKKMSTGYYNIDTERVRRQMRVVMPRITDVSL
ISERIANECFDMKVYMMEKFVSGVSKRSADPLPESAKYAEFMGKGVIEYD
LANIAEVEAYEANEARQQA*

BS17618.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-PD 319 CG3662-PD 1..319 1..319 1668 100 Plus
CG3662-PC 319 CG3662-PC 1..319 1..319 1668 100 Plus
CG3662-PA 319 CG3662-PA 1..319 1..319 1668 100 Plus
CG3662-PB 269 CG3662-PB 1..269 51..319 1410 100 Plus