Clone Sequence Records
BS17618.complete Sequence
992 bp assembled on 2010-02-09
GenBank Submission: KX803495
> BS17618.complete
GAAGTTATCAGTCGACATGACAATTCTGGGAAAACTGCGGGGACAGCCCA
CGGACCAGGAGAAGGTGCCCCTGCCCATGAACCTCAACGACGAGGCGCTC
ATGCACCATGGCTCCCTAATCGCACCCAAGGTTGCTTACAGCGATAATGA
AGCCGACGCGGAATCCATGGTCTTCAACCGGCCGCAGCACCATTGCATCA
AATCCTTTCTGCTGTTCCTGATCGCCGTAGTCGTGATGCTCCTGGGTGTC
CTGGGCGGATGGACCCTGTACCGAGTGTACGCTCCGTCGCATAGCAGCAT
GCGCTACCACGCCCTGTGCGAGATCCCCTATCCGGAGGACTCGATGGAGA
TGGCGCGGGTATATCCGCGCACCGTGGAACCGTTCGCCCTGAACTGGCGC
TCCTTGCTACCCGAGCTCGCGCAACCGATGCCCAACAGTGGATCGCTGGA
CGAGAGCCACTTCCGCGAGGACATCGAACTGGACGGTGACAGCGATGACG
AGGGCTACGCACGCGTGGACGTGCCCGACTTCAAGGATGGACGTCGTGGT
CGCTTCATGCACGACTTCAAGGAGAACCAGTCGGCCATTATCGACACTAC
CACCGGACGGTGCTTCATCATGCCCTTGGATCGGGACACGACCCTGCCCC
CGACCAGCTTTGTGGATCTCATAAAGAAGATGAGCACTGGCTACTACAAC
ATAGATACGGAGCGCGTGCGGCGCCAGATGCGTGTGGTCATGCCCCGCAT
CACCGATGTCTCGCTCATCTCGGAGCGGATTGCCAACGAGTGCTTCGATA
TGAAGGTCTACATGATGGAGAAGTTCGTCTCAGGCGTCTCGAAGAGATCG
GCTGATCCGCTGCCGGAGTCAGCCAAGTACGCCGAGTTCATGGGCAAGGG
CGTCATCGAGTACGACCTGGCCAACATCGCCGAGGTGGAGGCCTACGAGG
CCAACGAGGCTAGGCAACAGGCCTGAAAGCTTTCTAGACCAT
BS17618.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-RD | 960 | CG3662-PD | 1..960 | 17..976 | 4800 | 100 | Plus |
CG3662-RC | 960 | CG3662-PC | 1..960 | 17..976 | 4800 | 100 | Plus |
CG3662-RA | 960 | CG3662-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-RD | 1731 | CG3662-RD | 263..1223 | 16..976 | 4805 | 100 | Plus |
CG3662-RC | 1570 | CG3662-RC | 130..1090 | 16..976 | 4805 | 100 | Plus |
CG3662-RA | 1651 | CG3662-RA | 130..1090 | 16..976 | 4805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 822858..823569 | 125..836 | 3560 | 100 | Plus |
2L | 23513712 | 2L | 823636..823776 | 836..976 | 705 | 100 | Plus |
2L | 23513712 | 2L | 821551..821659 | 16..124 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:08:27 has no hits.
BS17618.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:24 Download gff for
BS17618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 1..960 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:34 Download gff for
BS17618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 135..1093 | 17..975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:25 Download gff for
BS17618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 131..1089 | 17..975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:24 Download gff for
BS17618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 130..1103 | 9..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:45 Download gff for
BS17618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 131..1089 | 17..975 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:45 Download gff for
BS17618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 821552..821659 | 17..124 | 100 | -> | Plus |
2L | 822858..823569 | 125..836 | 100 | -> | Plus |
2L | 823637..823775 | 837..975 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:25 Download gff for
BS17618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 821552..821659 | 17..124 | 100 | -> | Plus |
arm_2L | 822858..823569 | 125..836 | 100 | -> | Plus |
arm_2L | 823637..823775 | 837..975 | 100 | | Plus |
BS17618.3prime Sequence
869 bp (797 high quality bases) assembled on 2007-05-29
> BS17618.3prime
ATGGTCTAGAAAGCTTTCAGGCCTGTTGCCTAGCCTCGTTGGCCTCGTAG
GCCTCCACCTCGGCGATGTTGGCCAGGTCGTACTCGATGACGCCCTTGCC
CATGAACTCGGCGTACTTGGCTGACTCCGGCAGCGGATCAGCCGATCTCT
TCGAGACGCCTGAGACGAACTTCTCCATCATGTAGACCTTCATATCGAAG
CACTCGTTGGCAATCCGCTCCGAGATGAGCGAGACATCGGTGATGCGGGG
CATGACCACACGCATCTGGCGCCGCACGCGCTCCGTATCTATGTTGTAGT
AGCCAGTGCTCATCTTCTTTATGAGATCCACAAAGCTGGTCGGGGGCAGG
GTCGTGTCCCGATCCAAGGGCATGATGAAGCACCGTCCGGTGGTAGTGTC
GATAATGGCCGACTGGTTCTCCTTGAAGTCGTGCATGAAGCGACCACGAC
GTCCATCCTTGAAGTCGGGCACGTCCACGCGTGCGTAGCCCTCGTCATCG
CTGTCACCGTCCAGTTCGATGTCCTCGCGGAAGTGGCTCTCGTCCAGCGA
TCCACTGTTGGGCATCGGTTGCGCGAGCTCGGGTAGCAAGGAGCGCCAGT
TCAGGGCGAACGGTTCCACGGTGCGCGGATATACCCGCGCCATCTCCATC
GAGTCCTCCGGATAGGGGATCTCGCACAGGGCGTGGTAGCGCATGCTGCT
ATGCGACGGAGCGTACACTCGGTACAGGGTCCATCCGCCCAGGACACCCA
GGAGCATCACGACTACGGCGATCAGGAACAGCAGAAAGGATTTGATGCAA
TGGTGCTGCGGCCGGTTGAAGACCATGGATTCCGCGTCGGCTCATTATCG
CTGTAAGCACCCTTGGGTG
BS17618.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-PA | 960 | CG3662-RA | 135..960 | 842..17 | 4130 | 100 | Minus |
CG3662-PB | 810 | CG3662-RB | 1..810 | 826..17 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-RD | 1731 | CG3662-RD | 370..1223 | 869..17 | 4230 | 99.8 | Minus |
CG3662-RC | 1570 | CG3662-RC | 237..1090 | 869..17 | 4230 | 99.8 | Minus |
CG3662-RA | 1651 | CG3662-RA | 237..1090 | 869..17 | 4230 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 822858..823569 | 867..157 | 3495 | 99.7 | Minus |
2L | 23513712 | 2L | 823636..823776 | 157..17 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:12:33 has no hits.
BS17618.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:05 Download gff for
BS17618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-PA | 107..960 | 17..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:47:48 Download gff for
BS17618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 237..1099 | 6..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:52 Download gff for
BS17618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 237..1099 | 6..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:52 Download gff for
BS17618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 822855..823569 | 157..869 | 99 | -> | Minus |
2L | 823637..823785 | 6..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:47:48 Download gff for
BS17618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 822855..823569 | 157..869 | 99 | -> | Minus |
arm_2L | 823637..823785 | 6..156 | 97 | | Minus |
BS17618.5prime Sequence
818 bp (773 high quality bases) assembled on 2007-05-29
> BS17618.5prime
GAAGTTATCAGTCGACATGACAATTCTGGGAAAACTGCGGGGACAGCCCA
CGGACCAGGAGAAGGTGCCCCTGCCCATGAACCTCAACGACGAGGCGCTC
ATGCACCATGGCTCCCTAATCGCACCCAAGGTTGCTTACAGCGATAATGA
AGCCGACGCGGAATCCATGGTCTTCAACCGGCCGCAGCACCATTGCATCA
AATCCTTTCTGCTGTTCCTGATCGCCGTAGTCGTGATGCTCCTGGGTGTC
CTGGGCGGATGGACCCTGTACCGAGTGTACGCTCCGTCGCATAGCAGCAT
GCGCTACCACGCCCTGTGCGAGATCCCCTATCCGGAGGACTCGATGGAGA
TGGCGCGGGTATATCCGCGCACCGTGGAACCGTTCGCCCTGAACTGGCGC
TCCTTGCTACCCGAGCTCGCGCAACCGATGCCCAACAGTGGATCGCTGGA
CGAGAGCCACTTCCGCGAGGACATCGAACTGGACGGTGACAGCGATGACG
AGGGCTACGCACGCGTGGACGTGCCCGACTTCAAGGATGGACGTCGTGGT
CGCTTCATGCACGACTTCAAGGAGAACCAGTCGGCCATTATCGACACTAC
CACCGGACGGTGCTTCATCATGCCCTTGGATCGGGACACGACCCTGCCCC
CGACCAGCTTTGTGGATCTCATAAAGAAGATGAGCACTGGCTACTACAAC
ATAGATACNGAGCGCGTGCGGCGCCAGATGCGTGTGGTCATGCCCCGCAT
CACCGATGTCTCGCTCATCTCGGAGCGGATTGCCAACGAGTGCTTCGATA
TGAAGGTCTACATGATGG
BS17618.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-PA | 960 | CG3662-RA | 1..802 | 17..818 | 3991 | 99.8 | Plus |
CG3662-PB | 810 | CG3662-RB | 1..652 | 167..818 | 3241 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 13:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-RD | 1731 | CG3662-RD | 263..1065 | 16..818 | 4004 | 99.9 | Plus |
CG3662-RC | 1570 | CG3662-RC | 130..932 | 16..818 | 4004 | 99.9 | Plus |
CG3662-RA | 1651 | CG3662-RA | 130..932 | 16..818 | 4004 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 13:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 822858..823551 | 125..818 | 3459 | 99.9 | Plus |
2L | 23513712 | 2L | 821551..821659 | 16..124 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 13:47:52 has no hits.
BS17618.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:10 Download gff for
BS17618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-PA | 1..802 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:23 Download gff for
BS17618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 126..932 | 9..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:14:50 Download gff for
BS17618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 126..932 | 9..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:14:50 Download gff for
BS17618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 821547..821659 | 9..124 | 97 | -> | Plus |
2L | 822858..823551 | 125..818 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:23 Download gff for
BS17618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 821547..821659 | 9..124 | 97 | -> | Plus |
arm_2L | 822858..823551 | 125..818 | 99 | | Plus |
BS17618.pep Sequence
Translation from 16 to 975
> BS17618.pep
MTILGKLRGQPTDQEKVPLPMNLNDEALMHHGSLIAPKVAYSDNEADAES
MVFNRPQHHCIKSFLLFLIAVVVMLLGVLGGWTLYRVYAPSHSSMRYHAL
CEIPYPEDSMEMARVYPRTVEPFALNWRSLLPELAQPMPNSGSLDESHFR
EDIELDGDSDDEGYARVDVPDFKDGRRGRFMHDFKENQSAIIDTTTGRCF
IMPLDRDTTLPPTSFVDLIKKMSTGYYNIDTERVRRQMRVVMPRITDVSL
ISERIANECFDMKVYMMEKFVSGVSKRSADPLPESAKYAEFMGKGVIEYD
LANIAEVEAYEANEARQQA*
BS17618.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-PD | 319 | CG3662-PD | 1..319 | 1..319 | 1668 | 100 | Plus |
CG3662-PC | 319 | CG3662-PC | 1..319 | 1..319 | 1668 | 100 | Plus |
CG3662-PA | 319 | CG3662-PA | 1..319 | 1..319 | 1668 | 100 | Plus |
CG3662-PB | 269 | CG3662-PB | 1..269 | 51..319 | 1410 | 100 | Plus |