Clone BS17619 Report

Search the DGRC for BS17619

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG8079-RA
Protein status:BS17619.pep: full length peptide match
Sequenced Size:1838

Clone Sequence Records

BS17619.complete Sequence

1838 bp assembled on 2009-12-07

GenBank Submission: KX805951

> BS17619.complete
GAAGTTATCAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGG
ACACTGTCGCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTG
GAAACCTGCGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGG
GATTATCCGCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCC
TACACTACGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAA
GCAACTGAATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGA
GGATACTAACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCT
TCAGTTTTGTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTG
AACAACTTCGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGAC
GGGATACTACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACG
GCTGCTACTACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCT
CAGGCCCAGGTACAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGA
GGATTTGGAGGTGCAGTTCGATGAGCTGGGAGGCGTCATTACGGACCACG
AAACGCTGAAGAAGATTAAGGCCGAGAAGCAAAAGGCCAAAGATCAAGCT
GAAAAATCCAAGCGCAAAGCCAAGAAAAAGAAGAGTAAAAAGCACAGCAA
GAAGAGATCCAAGAAGGAGCGCCGTCACAAGTCCAAGAAGCGTCACAGGC
ATTCTGATGATGAGCGGTCTAATGATGCCGAGGAGGGCGAGCTGTCGCAA
AGCAGCGACTCCAGTTCCGACTCTAGCAACGAGGATAGCAGCAGCAACAC
GGAAGACAGCAGTGTTCCAGTTTTCAAGGCTGCCGGACGCTTTCAAGACA
TTGCTAAAAAGTATCCACCCTCCCTCCGCATCATTGTCCAGGAGACTAAC
GTAGAGTCGCTGAAAGTGGGAAGCCTGCATCTAATCACATACAAAGGTGG
ATCTCTTGGACGGGAGGGCGCTCACGATGTTATCATTCCGGACGTGAACG
TCAGCAAGTGCCACTTAAAGTTTAAGTATGAGAACAAGTTGGGAATCTAC
CAATGTCTTGATCTGGGCTCCCGAAACGGTACCATTCTCAATGGATCCCC
AATGTCCAGCGACGCCATGGATCTCGTTCACGGCAGTGTTATCACTCTGG
GCCAAACAAGACTACTGTGTCATGTCCACGAGGGTAACAGTACCTGCGGT
TTGTGCGAGCCGGGCCTTTTGATAGAGAATTCTCCGCCGGTAGTGGCCGC
TGTTGCCTCATCCACCGCATCCGTATTATCTCACAAGGAGCAGTTAAAAA
AACTGCAGCGCAAATATGGACTAGAAAACGAAAAATTCGTTGATACTAGC
GGCAATGGGCAGTCCAACTACAATGATCGTGCCGCAACAAGGAGAGTCCA
GGTGGGCAGCAGTACAGATAAAGAAAAGACTGAGGTGGCTTGTGTGAACA
CTGAAATCGGTAGCTCTAATAAGGGTTTTAAAATGCTGAGTAAATTGGGC
TGGCAAAAGGGCGAAAAACTGGGCAAAACAAATGCCAGTGCTGGACTTTT
GGAGCCGATCAATGTGGTAGCCAATGAGGGCACTAGCGGTCTGGGAAACA
GTGACCCAGTGCTGTCCAGCTCCAGAACCATTGACAAACGGAAGCTGGCC
AACTTGAAGATCACTCAGGCGCGATATCAGCGCGCCAGTGATATGTTTGG
ACAATCGGATGATAGTGATTAGAAGCTTTCTAGACCAT

BS17619.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RA 1806 CG8079-PA 1..1806 17..1822 9030 100 Plus
CG8079-RB 1800 CG8079-PB 1..1800 17..1822 8905 99.7 Plus
CG8079-RC 1506 CG8079-PC 630..1506 946..1822 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RA 2156 CG8079-RA 84..1891 17..1824 9040 100 Plus
CG8079-RB 2218 CG8079-RB 84..1885 17..1824 8915 99.7 Plus
CG8079-RD 2159 CG8079-RD 777..2038 563..1824 6310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15222495..15222982 946..1433 2440 100 Plus
2R 25286936 2R 15222041..15222425 563..947 1925 100 Plus
2R 25286936 2R 15218464..15218657 17..210 970 100 Plus
2R 25286936 2R 15223383..15223550 1657..1824 840 100 Plus
2R 25286936 2R 15221429..15221566 333..470 690 100 Plus
2R 25286936 2R 15218713..15218836 209..332 620 100 Plus
2R 25286936 2R 15223042..15223159 1434..1551 590 100 Plus
2R 25286936 2R 15223221..15223326 1552..1657 530 100 Plus
2R 25286936 2R 15221727..15221824 469..566 490 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:46:55 has no hits.

BS17619.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:30 Download gff for BS17619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 1..1806 17..1822 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:14 Download gff for BS17619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1889 17..1822 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:32 Download gff for BS17619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1889 17..1822 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:07 Download gff for BS17619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1889 17..1822 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:39 Download gff for BS17619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1889 17..1822 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:39 Download gff for BS17619.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15218464..15218655 17..208 100 -> Plus
2R 15218713..15218836 209..332 100 -> Plus
2R 15221429..15221565 333..469 100 -> Plus
2R 15221728..15221823 470..565 100 -> Plus
2R 15222044..15222425 566..947 100 -> Plus
2R 15222497..15222982 948..1433 100 -> Plus
2R 15223042..15223159 1434..1551 100 -> Plus
2R 15223221..15223326 1552..1657 100 -> Plus
2R 15223384..15223548 1658..1822 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:32 Download gff for BS17619.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11105969..11106160 17..208 100 -> Plus
arm_2R 11106218..11106341 209..332 100 -> Plus
arm_2R 11108934..11109070 333..469 100 -> Plus
arm_2R 11109233..11109328 470..565 100 -> Plus
arm_2R 11109549..11109930 566..947 100 -> Plus
arm_2R 11110002..11110487 948..1433 100 -> Plus
arm_2R 11110547..11110664 1434..1551 100 -> Plus
arm_2R 11110726..11110831 1552..1657 100 -> Plus
arm_2R 11110889..11111053 1658..1822 100   Plus

BS17619.3prime Sequence

909 bp (816 high quality bases) assembled on 2007-05-29

> BS17619.3prime
ATGGTCTAGAAAGCTTCTAATCACTATCATCCGATTGTCCAAACATATCA
CTGGCGCGCTGATATCGCGCCTGAGTGATCTTCAAGTTGGCCAGCTTCCG
TTTGTCAATGGTTCTGGAGCTGGACAGCACTGGGTCACTGTTTCCCAGAC
CGCTAGTGCCCTCATTGGCTACCACATTGATCGGCTCCAAAAGTCCAGCA
CTGGCATTTGTTTTGCCCAGTTTTTCGCCCTTTTGCCAGCCCAATTTACT
CAGCATTTTAAAACCCTTATTAGAGCTACCGATTTCAGTGTTCACACAAG
CCACCTCAGTCTTTTCTTTATCTGTACTGCTGCCCACCTGGACTCTCCTT
GTTGCGGCACGATCATTGTAGTTGGACTGCCCATTGCCGCTAGTATCAAC
GAATTTTTCGTTTTCTAGTCCATATTTGCGCTGCAGTTTTTTTAACTGCT
CCTTGTGAGATAATACGGATGCGGTGGATGAGGCAACAGCGGCCACTACC
GGCGGAGAATTCTCTATCAAAAGGCCCGGCTCGCACAAACCGCAGGTACT
GTTACCCTCGTGGACATGACACAGTAGTCTTGTTTGGCCCAGAGTGATAA
CACTGCCGTGAACGAGATCCATGGCGTCGCTGGACATTGGGGATCCATTG
AGAATGGTACCGTTTCGGGAGCCCAGATCAAGACATTGGTAGATTCCCAA
CTTGTTCTCATACTTAAACTTTAAGTGGCACTTGCTGACGTTCACGTCCG
GAATGATAACATCGTGAGCGCCCTCCCGTCCAAGAGATCCACCTTTGTAT
GTGATTAGATGCANGCTTCCCACTTTCAGCGACTCTACGTTAGTCTCCTG
GACAATGATGCGGAGGGAGGGTGGATACTTTTTAGCAATGTCTTGAAAGC
GTCCGGCAG

BS17619.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-PB 1800 CG8079-RB 908..1800 909..17 4446 99.8 Minus
CG8079-PA 1806 CG8079-RA 914..1806 909..17 4446 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RE 2096 CG8079-RE 1081..1975 909..15 4464 99.9 Minus
CG8079-RD 2159 CG8079-RD 1144..2038 909..15 4464 99.9 Minus
CG8079-RA 2156 CG8079-RA 997..1891 909..15 4464 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15222495..15222982 893..406 2429 99.8 Minus
2R 25286936 2R 15223383..15223550 182..15 840 100 Minus
2R 25286936 2R 15223042..15223159 405..288 590 100 Minus
2R 25286936 2R 15223221..15223326 287..182 530 100 Minus
Blast to na_te.dros performed 2015-02-13 15:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
transib4 2656 transib4 TRANSIB4 2656bp 209..261 447..395 112 67.9 Minus

BS17619.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:17 Download gff for BS17619.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-PA 914..1806 17..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:19 Download gff for BS17619.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 997..1898 10..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:09:09 Download gff for BS17619.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 997..1898 10..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:09:09 Download gff for BS17619.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15223221..15223326 182..287 100 -> Minus
2R 15223384..15223557 10..181 98   Minus
2R 15222408..15222425 892..909 100 -> Minus
2R 15222497..15222982 406..891 99 -> Minus
2R 15223042..15223159 288..405 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:19 Download gff for BS17619.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11109913..11109930 892..909 100 -> Minus
arm_2R 11110002..11110487 406..891 99 -> Minus
arm_2R 11110547..11110664 288..405 100 -> Minus
arm_2R 11110726..11110831 182..287 100 -> Minus
arm_2R 11110889..11111062 10..181 98   Minus

BS17619.5prime Sequence

888 bp (699 high quality bases) assembled on 2007-05-29

> BS17619.5prime
GAAGTTATCAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGG
ACACTGTCGCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTG
GAAACCTGCGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGG
GATTATCCGCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCC
TACACTACGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAA
GCAACTGAATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGA
GGATACTAACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCT
TCAGTTTTGTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTG
AACAACTTCGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGAC
GGGATACTACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACG
GCTGCTACTACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCT
CAGGCCCAGGTACAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGA
GGATTTGGAGGTGCAGTTCGATGAGCTGGGAGGCGTCATTACGGACCACG
AAACGCTGAAGAAGATTAAGGCCGAGAAGCAAAAGGCCAAAGATCAAGCT
GAAAAATCCAAGCGCAAAGCCAAGAAAAAGAAGAGTNAAAAGCACAGCAA
GAAGAGATCCAAGAAAGAGCGCCGTCACAAGTCCAAGAAGCGTCACAGGC
ATTCTGATGATGAGCGGGTCTATGATGCCGAGGAAGGCGAGCTGTCGCAA
AGCAGCGACTCCAGTTTCGACTCTAGCAACGAGGATAG

BS17619.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-PA 1806 CG8079-RA 1..801 17..817 3961 99.7 Plus
CG8079-PB 1800 CG8079-RB 1..544 17..560 2720 100 Plus
CG8079-PB 1800 CG8079-RB 541..795 563..817 1231 99.2 Plus
CG8079-PA 1806 CG8079-RA 806..872 822..888 285 97 Plus
CG8079-PB 1800 CG8079-RB 800..866 822..888 285 97 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RA 2156 CG8079-RA 84..955 17..888 4259 99.3 Plus
CG8079-RB 2218 CG8079-RB 84..949 17..888 4159 98.6 Plus
CG8079-RE 2096 CG8079-RE 86..634 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15222041..15222366 563..888 1514 97.5 Plus
2R 25286936 2R 15218464..15218657 17..210 970 100 Plus
2R 25286936 2R 15221429..15221566 333..470 690 100 Plus
2R 25286936 2R 15218713..15218836 209..332 620 100 Plus
2R 25286936 2R 15221727..15221824 469..566 490 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:00:33 has no hits.

BS17619.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:24 Download gff for BS17619.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-PA 1..872 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:08:33 Download gff for BS17619.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..955 17..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:22 Download gff for BS17619.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..955 17..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:22 Download gff for BS17619.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15218713..15218836 209..332 100 -> Plus
2R 15221429..15221565 333..469 100 -> Plus
2R 15221728..15221823 470..565 100 -> Plus
2R 15218464..15218655 17..208 100 -> Plus
2R 15222044..15222366 566..888 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:08:33 Download gff for BS17619.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11105969..11106160 17..208 100 -> Plus
arm_2R 11106218..11106341 209..332 100 -> Plus
arm_2R 11108934..11109070 333..469 100 -> Plus
arm_2R 11109233..11109328 470..565 100 -> Plus
arm_2R 11109549..11109871 566..888 98   Plus

BS17619.pep Sequence

Translation from 16 to 1821

> BS17619.pep
MSLPAEEEDLADTVAKYDSIELKSIQDLETCEQQQLLQYVEKLHGIIRKY
DTKLASYKQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKK
DQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYN
AEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQVQANDAAKPESEDEDLEVQ
FDELGGVITDHETLKKIKAEKQKAKDQAEKSKRKAKKKKSKKHSKKRSKK
ERRHKSKKRHRHSDDERSNDAEEGELSQSSDSSSDSSNEDSSSNTEDSSV
PVFKAAGRFQDIAKKYPPSLRIIVQETNVESLKVGSLHLITYKGGSLGRE
GAHDVIIPDVNVSKCHLKFKYENKLGIYQCLDLGSRNGTILNGSPMSSDA
MDLVHGSVITLGQTRLLCHVHEGNSTCGLCEPGLLIENSPPVVAAVASST
ASVLSHKEQLKKLQRKYGLENEKFVDTSGNGQSNYNDRAATRRVQVGSST
DKEKTEVACVNTEIGSSNKGFKMLSKLGWQKGEKLGKTNASAGLLEPINV
VANEGTSGLGNSDPVLSSSRTIDKRKLANLKITQARYQRASDMFGQSDDS
D*

BS17619.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-PA 601 CG8079-PA 1..601 1..601 3101 100 Plus
CG8079-PB 599 CG8079-PB 1..599 1..601 3079 99.7 Plus
CG8079-PC 501 CG8079-PC 211..501 311..601 1490 100 Plus
CG8079-PC 501 CG8079-PC 1..183 1..183 974 100 Plus
CG8079-PE 229 CG8079-PE 1..183 1..183 974 100 Plus
CG8079-PD 250 CG8079-PD 1..183 1..183 974 100 Plus