Clone Sequence Records
BS17623.3prime Sequence
879 bp (816 high quality bases) assembled on 2007-05-29
> BS17623.3prime
ATGGTCTAGAAAGCTTCTAGAGTAGCGTCTCATTGCCATACTGCTGCAAG
TGGGGATAGTAGCTGCCGTGCTGGCTGTACTTTTGCGAGGCATAGCTACC
TGGCGGATAATACAGCCGATGCGAGGATGTGGAGTGATGCTGGTGATTGT
GGTGGGGATGGAACTGATGATGCTGCTGCTGCTGGTGATGATGATGATGC
GGCGAATGGCGCTGCTGGTGATGCACGCTCCTGCCCAGCGAATAGTTGGA
CATCTGATTCAGCGATATAGAGCCGGTACCAGGCGAAGTCTTCAGTTTGT
ACGGACTTGGCGGCAACGGAACACTGGCCATAGAAGTTCGCACCGAATGG
TAGGAGACCACCGTGCTATTGCAAGCCGCATGCGATCCACGCGAGCTACT
ATGCCCGTCCAGGTGTCCAGTTGCTGCTCCGGCAGACGTATGCTTCACCA
TTTTGCCATTGCTGACTTGCCTCTTGTAGAGAGTGGAAATGCTTGGTCCA
AGTACCCAGGCAAAACAGCAAATGCCCAGCATCAGTTCCATGAAGGCGCG
CAACAAAAATGGCCAAAGTGGCGTATTGGTATCACCCGATCCCAGCCAGA
CATCGATGTTGGCAAACTCGTAAATGACAGCCAACAGAAGCATGGCACAT
GCAAGTCCATAGATGAAAAGGAATATGCCAATGCCGGAACTACTGTGTGC
GCTTAGCTGTTGCAGTTGCTGTTGCACGCTGAGTGCATTGCTATTCCTCA
GGATCTCCTTGGTGCGACAGTGTACCAAATAGCCGGAGATCAGATTCATC
GAGCCAAAGATCCAGTAGCAAAAAACGGGCGTAGCCACAAATATCTGTAG
CGCCTTATCCGACTGATTGCCTACGAAAC
BS17623.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4626-PB | 2118 | fz4-RB | 1256..2118 | 879..17 | 4290 | 99.8 | Minus |
| CG4626-PA | 2118 | fz4-RA | 1256..2118 | 879..17 | 4290 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz4-RA | 3927 | CG4626-RA | 1956..2819 | 879..16 | 4305 | 99.9 | Minus |
| fz4-RB | 3674 | CG4626-RB | 1703..2566 | 879..16 | 4305 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7107380..7108243 | 16..879 | 4305 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:42:01 has no hits.
BS17623.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:52 Download gff for
BS17623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4626-PA | 1256..2118 | 17..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:21 Download gff for
BS17623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RB | 1703..2566 | 16..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:10:02 Download gff for
BS17623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RB | 1703..2566 | 16..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:10:02 Download gff for
BS17623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7107380..7108243 | 16..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:21 Download gff for
BS17623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7001413..7002276 | 16..879 | 99 | | Plus |
BS17623.5prime Sequence
884 bp (710 high quality bases) assembled on 2007-05-29
> BS17623.5prime
GAAGTTATCAGTCGACATGAAGCCAACCTGCATATTGTGTCTCCTGGTGG
TGATCCTCCTGCATCCGCGCATCTCAAAATCCTCAACGAGCGGCAACCCC
AGTGCCAGTTCCAGTTCCAGTTCTCCGCCAGAAATCCCCGCCTTCCGGCA
ATGCGAAACCATTCGCATTGAGATGTGCCGCAAGATCGGCTACAATGAGA
CCTCCATGCCAAATCTGGTGGGTAACGAAATGCAAACGGACGTGGAGTAC
ACACTGCAAACCTTTGCACCACTGATCGAATACGACTGCAGTTCCCAGTT
GAAGCTGTTCCTGTGCGCCGCCTACGTGCCCATGTGCACGCCCAAAGCTC
CAGTCCATGCCATCGGTCCGTGCCGGAGTCTCTGTGAGTCCGTGCGAATA
CGTTGTCATCCAGTTTTGCAGGGATTCGGATTTCCATGGCCACCGGCTCT
CGACTGCGATAAATTTCCGCGAGAGAACAACCACGAGACGATGTGTATGG
AAGGTCCCGGTGAATTGCATCAGCCGCAGCAGGAGCAGGATTTGTATGGG
CTACCGGGCCAAGGAATACCCGGTGGATTGGGCGGTAAACTGCCCATGGA
TTGCTCGGGACTGGCCAAATCGCATCTGTACGTAAGGCTACCCAGATCTG
GACGCTGTGCACCACTCTGCGAGGCGGACATACTGTTCACACCGGCGGAG
AAGCATCTGGCAGAGATCTGGGTCTCCACATGGGCCTATGCCGCTTTGGG
TTTGGCCCTGGTAGCCACCGTGTGTCTTTTGGCCAGCGATGGCAGTCGTT
TGGCCAGCGCCAAGTGGTCCAGATTGTTGTCGCCGCTGATTTGGTGCCAC
AACATGGTCACCCTTGGCTGGGCAGTGCGCTTTA
BS17623.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4626-PB | 2118 | fz4-RB | 1..868 | 17..884 | 4290 | 99.7 | Plus |
| CG4626-PA | 2118 | fz4-RA | 1..868 | 17..884 | 4290 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz4-RA | 3927 | CG4626-RA | 691..1568 | 7..884 | 4315 | 99.4 | Plus |
| fz4-RB | 3674 | CG4626-RB | 438..1315 | 7..884 | 4315 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7108754..7109631 | 884..7 | 4315 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:59:36 has no hits.
BS17623.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:11:57 Download gff for
BS17623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4626-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:13:49 Download gff for
BS17623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RB | 438..1314 | 7..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:34:48 Download gff for
BS17623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RB | 438..1314 | 7..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:34:48 Download gff for
BS17623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7108755..7109631 | 7..883 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:13:49 Download gff for
BS17623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7002788..7003664 | 7..883 | 99 | | Minus |
BS17623.complete Sequence
2150 bp assembled on 2009-12-07
GenBank Submission: KX800759
> BS17623.complete
GAAGTTATCAGTCGACATGAAGCCAACCTGCATATTGTGTCTCCTGGTGG
TGATCCTCCTGCATCCGCGCATCTCAAAATCCTCAACGAGCGGCAACCCC
AGTGCCAGTTCCAGTTCCAGTTCTCCGCCAGAAATCCCCGCCTTCCGGCA
ATGCGAAACCATTCGCATTGAGATGTGCCGCAAGATCGGCTACAATGAGA
CCTCCATGCCAAATCTGGTGGGTAACGAAATGCAAACGGACGTGGAGTAC
ACACTGCAAACCTTTGCACCACTGATCGAATACGACTGCAGTTCCCAGTT
GAAGCTGTTCCTGTGCGCCGCCTACGTGCCCATGTGCACGCCCAAAGCTC
CAGTCCATGCCATCGGTCCGTGCCGGAGTCTCTGTGAGTCCGTGCGAATA
CGTTGTCATCCAGTTTTGCAGGGATTCGGATTTCCATGGCCACCGGCTCT
CGACTGCGATAAATTTCCGCGAGAGAACAACCACGAGACGATGTGTATGG
AAGGTCCCGGTGAATTGCATCAGCCGCAGCAGGAGCAGGATTTGTATGGG
CTACCGGGCCAAGGAATACCCGGTGGATTGGGCGGTAAACTGCCCATGGA
TTGCTCGGGACTGGCCAAATCGCATCTGTACGTAAGGCTACCCAGATCTG
GACGCTGTGCACCACTCTGCGAGGCGGACATACTGTTCACACCGGCGGAG
AAGCATCTGGCAGAGATCTGGGTCTCCACATGGGCCTATGCCGCTTTGGG
TTTGGCCCTGGTAGCCACCGTGTGTCTTTTGGCCAGCGATGGCAGTCGTT
TGGCCAGCGCCAAGTGGTCCAGATTGTTGTCGCCGCTGATTTGGTGCCAC
AACATGGTCACCTTGGGCTGGGCAGTGCGCTTTATGGTGGGAAGAACGGG
AACTGCGTGCGGCACGGATCCCCAGGCGCCCAATGAATCCCTACTCACCG
TGGACGGACTGTCCAATGCCTCCTGCGCTAGTGTCTTCCTTATGCGCTAC
TATTTTGGAATGGCCGCCTGCGCTTGGTGGGCTGTGCTCTGTTTGGGCTG
GCACCGCGACATTCGTCGGCACAGTCCGGACTCCAAGGGCCATGTGGTCA
TTCCCTCGAACTTTGGAGGCAGTCCGGCGAAGAGGAACAGTGCCAAGACG
GCTCAGCAGGATCTAACGCAAAACAACTTTGTGTGCTTCGTGGCCTGGGG
ATTGCCGGCCTTTCAAACGTCAGCAGTGATCGTTGCCCGTTTCGTGGATG
CTGACGAGTTGCTTGGCGCCTGTTTCGTAGGCAATCAGTCGGATAAGGCG
CTACAGATATTGGTGGCTACGCCCGTTTTTTGCTACTGGATCTTTGGCTC
GATGAATCTGATCTCCGGCTATTTGGTACACTGTCGCACCAAGGAGATCC
TGAGGAATAGCAATGCACTCAGCGTGCAACAGCAACTGCAACAGCTAAGC
GCACACAGTAGTTCCGGCATTGGCATATTCCTTTTCATCTATGGACTTGC
ATGTGCCATGCTTCTGTTGGCTGTCATTTACGAGTTTGCCAACATCGATG
TCTGGCTGGGATCGGGTGATACCAATACGCCACTTTGGCCATTTTTGTTG
CGCGCCTTCATGGAACTGATGCTGGGCATTTGCTGTTTTGCCTGGGTACT
TGGACCAAGCATTTCCACTCTCTACAAGAGGCAAGTCAGCAATGGCAAAA
TGGTGAAGCATACGTCTGCCGGAGCAGCAACTGGACACCTGGACGGGCAT
AGTAGCTCGCGTGGATCGCATGCGGCTTGCAATAGCACGGTGGTCTCCTA
CCATTCGGTGCGAACTTCTATGGCCAGTGTTCCGTTGCCGCCAAGTCCGT
ACAAACTGAAGACTTCGCCTGGTACCGGCTCTATATCGCTGAATCAGATG
TCCAACTATTCGCTGGGCAGGAGCGTGCATCACCAGCAGCGCCATTCGCC
GCATCATCATCATCACCAGCAGCAGCAGCATCATCAGTTCCATCCCCACC
ACAATCACCAGCATCACTCCACATCCTCGCATCGGCTGTATTATCCGCCA
GGTAGCTATGCCTCGCAAAAGTACAGCCAGCACGGCAGCTACTATCCCCA
CTTGCAGCAGTATGGCAATGAGACGCTACTCTAGAAGCTTTCTAGACCAT
BS17623.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz4-RA | 2118 | CG4626-PA | 1..2118 | 17..2134 | 10590 | 100 | Plus |
| fz4-RB | 2118 | CG4626-PB | 1..2118 | 17..2134 | 10590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz4-RA | 3927 | CG4626-RA | 691..2819 | 7..2135 | 10600 | 99.9 | Plus |
| fz4-RB | 3674 | CG4626-RB | 438..2566 | 7..2135 | 10600 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7108610..7109631 | 1028..7 | 5065 | 99.7 | Minus |
| X | 23542271 | X | 7107380..7108250 | 2135..1265 | 4355 | 100 | Minus |
| X | 23542271 | X | 7108311..7108551 | 1266..1026 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:40:25 has no hits.
BS17623.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:31 Download gff for
BS17623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RA | 1..2118 | 17..2134 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:24 Download gff for
BS17623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RA | 154..2271 | 17..2134 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:25 Download gff for
BS17623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RB | 448..2565 | 17..2134 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:18 Download gff for
BS17623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RA | 154..2271 | 17..2134 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:14 Download gff for
BS17623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RB | 448..2565 | 17..2134 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:14 Download gff for
BS17623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7107381..7108249 | 1266..2134 | 100 | <- | Minus |
| X | 7108312..7108550 | 1027..1265 | 100 | <- | Minus |
| X | 7108612..7109621 | 17..1026 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:25 Download gff for
BS17623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7002645..7003654 | 17..1026 | 100 | | Minus |
| arm_X | 7001414..7002282 | 1266..2134 | 100 | <- | Minus |
| arm_X | 7002345..7002583 | 1027..1265 | 100 | <- | Minus |
BS17623.pep Sequence
Translation from 16 to 2133
> BS17623.pep
MKPTCILCLLVVILLHPRISKSSTSGNPSASSSSSSPPEIPAFRQCETIR
IEMCRKIGYNETSMPNLVGNEMQTDVEYTLQTFAPLIEYDCSSQLKLFLC
AAYVPMCTPKAPVHAIGPCRSLCESVRIRCHPVLQGFGFPWPPALDCDKF
PRENNHETMCMEGPGELHQPQQEQDLYGLPGQGIPGGLGGKLPMDCSGLA
KSHLYVRLPRSGRCAPLCEADILFTPAEKHLAEIWVSTWAYAALGLALVA
TVCLLASDGSRLASAKWSRLLSPLIWCHNMVTLGWAVRFMVGRTGTACGT
DPQAPNESLLTVDGLSNASCASVFLMRYYFGMAACAWWAVLCLGWHRDIR
RHSPDSKGHVVIPSNFGGSPAKRNSAKTAQQDLTQNNFVCFVAWGLPAFQ
TSAVIVARFVDADELLGACFVGNQSDKALQILVATPVFCYWIFGSMNLIS
GYLVHCRTKEILRNSNALSVQQQLQQLSAHSSSGIGIFLFIYGLACAMLL
LAVIYEFANIDVWLGSGDTNTPLWPFLLRAFMELMLGICCFAWVLGPSIS
TLYKRQVSNGKMVKHTSAGAATGHLDGHSSSRGSHAACNSTVVSYHSVRT
SMASVPLPPSPYKLKTSPGTGSISLNQMSNYSLGRSVHHQQRHSPHHHHH
QQQQHHQFHPHHNHQHHSTSSHRLYYPPGSYASQKYSQHGSYYPHLQQYG
NETLL*
BS17623.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz4-PA | 705 | CG4626-PA | 1..705 | 1..705 | 3824 | 100 | Plus |
| fz4-PB | 705 | CG4626-PB | 1..705 | 1..705 | 3824 | 100 | Plus |
| fz2-PG | 694 | CG9739-PG | 57..604 | 38..544 | 465 | 25.5 | Plus |
| fz2-PE | 694 | CG9739-PE | 57..604 | 38..544 | 465 | 25.5 | Plus |
| fz2-PD | 694 | CG9739-PD | 57..604 | 38..544 | 465 | 25.5 | Plus |
