Clone Sequence Records
BS17625.complete Sequence
959 bp assembled on 2010-02-09
GenBank Submission: KX804517
> BS17625.complete
GAAGTTATCAGTCGACATGGCCGAGAACAAGCAAGTGGATACAGAAATAA
ACGGCGAGGATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAA
AATGGTGATGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCA
ATCGGCCGCATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTG
GTCTGAGCTGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAA
TATGGCGAGATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCG
GTCCCGAGGATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACA
AAGTCAGCGCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCC
AAGAAGGCCAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCAC
AGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATA
TCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGA
TTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAA
GACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGA
CGCCCAAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGC
GGTGGTATGCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAA
CAACCAGTGGGACGGACAGGGATCATACGGCGGCTATGGCGGCGGCTACG
GCGGATATGGTGCCGGTGGTTATGGCGACTACTATGCCGGCGGCTACTAT
AATGGATATGACTACGGTTATGGCGGTGGCGGTTTTAACGGTGGCAAGCA
GCGCGGAGGCGGTGGACGCCAGCAGCGGCATCAGCCCTACTAAAAGCTTT
CTAGACCAT
BS17625.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqd-RC | 927 | CG16901-PC | 1..927 | 17..943 | 4635 | 100 | Plus |
| sqd-RE | 927 | CG16901-PE | 1..927 | 17..943 | 4635 | 100 | Plus |
| sqd-RA | 966 | CG16901-PA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqd-RC | 2239 | CG16901-RC | 111..1039 | 17..945 | 4645 | 100 | Plus |
| sqd-RE | 2844 | CG16901-RE | 386..1314 | 17..945 | 4645 | 100 | Plus |
| sqd-RA | 5551 | CG16901-RA | 115..971 | 17..873 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13642829..13643103 | 499..225 | 1375 | 100 | Minus |
| 3R | 32079331 | 3R | 13642511..13642755 | 744..500 | 1225 | 100 | Minus |
| 3R | 32079331 | 3R | 13645752..13645919 | 184..17 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 13642298..13642428 | 873..743 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 13636453..13636526 | 945..872 | 370 | 100 | Minus |
| 3R | 32079331 | 3R | 13643169..13643212 | 224..181 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:08:06 has no hits.
BS17625.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:09 Download gff for
BS17625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RC | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:29 Download gff for
BS17625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RC | 386..1310 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:14 Download gff for
BS17625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RE | 386..1310 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:09 Download gff for
BS17625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RC | 378..1314 | 9..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:37 Download gff for
BS17625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RE | 386..1310 | 17..941 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:37 Download gff for
BS17625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13636457..13636525 | 873..941 | 100 | <- | Minus |
| 3R | 13642299..13642427 | 744..872 | 100 | <- | Minus |
| 3R | 13642512..13642755 | 500..743 | 100 | <- | Minus |
| 3R | 13642829..13643103 | 225..499 | 100 | <- | Minus |
| 3R | 13643169..13643209 | 184..224 | 100 | <- | Minus |
| 3R | 13645753..13645919 | 17..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:14 Download gff for
BS17625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9462179..9462247 | 873..941 | 100 | <- | Minus |
| arm_3R | 9468021..9468149 | 744..872 | 100 | <- | Minus |
| arm_3R | 9468234..9468477 | 500..743 | 100 | <- | Minus |
| arm_3R | 9468551..9468825 | 225..499 | 100 | <- | Minus |
| arm_3R | 9468891..9468931 | 184..224 | 100 | <- | Minus |
| arm_3R | 9471475..9471641 | 17..183 | 100 | | Minus |
BS17625.3prime Sequence
859 bp (754 high quality bases) assembled on 2007-05-29
> BS17625.3prime
ATGGTCTAGAAAGCTTTTAGTAGGGCTGATGCCGCTGCTGGCGTCCACCG
CCTCCGCGCTGCTTGCCACCGTTAAAACCGCCACCGCCATAACCGTAGTC
ATATCCATTATAGTAGCCGCCGGCATAGTAGTCGCCATAACCACCGGCAC
CATATCCGCCGTAGCCGCCGCCATAGCCGCCGTATGATCCCTGTCCGTCC
CACTGGTTGTTGTAGCCACCTCGTCCTCCGTAGCCACCGCGTCCGCCGCG
CATACCACCGCGTGGTCCACCACGCATACCGCCCATCATCTGGTTCTCCG
GCTTGGGCGTCGCACGCTTAACATCGACCTCCTTGCCGGCGATCTTCTGC
TTGGGCGTCTTCAGCAAATCTGTCACCACCTGCTCCGAATCGAAGGTGAT
GAAGCAGAATCCTTTGCGCTGCGACTTTTGCTTGTCGAATGGCATCTCCA
CCTCGACGATATTGCCGAACTGTCCAAAGTAGGTCTTAATCTCCTCATCG
CTGATCTCTGTGGTGAGGCCGCCGACAAAGATCTTGCCGTGCCTGGCCTT
GGCCTTCTTGGGATCGACCTTCTTGCTGTTGATTATGTGCTCATCCGCGG
CGCTGACTTTGTCAATGGCCTCGGTGTTTGTAAACACGATGAAGGCGAAT
CCTCGGGACCGACCGGTCTGGGGATCTGTCTTGACATTGATGCTCTCGAT
CTCGCCATATTTGCCGAAGTGATCGCGGAGTTCCTTCTCAGTCGTTTCCC
AGCTCAGACCACCGACAAACAGTTTCCTGTCGTCGTCCCGCTGGCCGGAT
GCGGCCGATTGGTTGTCCGAACTGCCGTTGGTCGAGCCGGCGGCCCCCGC
ATCACCATT
BS17625.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16901-PC | 927 | sqd-RC | 85..927 | 859..17 | 4190 | 99.8 | Minus |
| CG16901-PA | 966 | sqd-RA | 85..857 | 859..87 | 3840 | 99.8 | Minus |
| CG16901-PB | 1035 | sqd-RB | 85..856 | 859..88 | 3835 | 99.8 | Minus |
| CG16901-PD | 537 | sqd-RD | 1..358 | 445..88 | 1790 | 100 | Minus |
| CG16901-PB | 1035 | sqd-RB | 964..1035 | 88..17 | 360 | 100 | Minus |
| CG16901-PD | 537 | sqd-RD | 466..537 | 88..17 | 360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqd-RC | 2239 | CG16901-RC | 195..1039 | 859..15 | 4210 | 99.9 | Minus |
| sqd-RE | 2844 | CG16901-RE | 470..1314 | 859..15 | 4210 | 99.9 | Minus |
| sqd-RA | 5551 | CG16901-RA | 199..971 | 859..87 | 3850 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13642829..13643103 | 461..735 | 1375 | 100 | Plus |
| 3R | 32079331 | 3R | 13642511..13642755 | 216..460 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 13642298..13642428 | 87..217 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 13645752..13645835 | 776..859 | 405 | 98.8 | Plus |
| 3R | 32079331 | 3R | 13636453..13636526 | 15..88 | 370 | 100 | Plus |
| 3R | 32079331 | 3R | 13643169..13643212 | 736..779 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:23:33 has no hits.
BS17625.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:12:16 Download gff for
BS17625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16901-PC | 85..927 | 17..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:39:33 Download gff for
BS17625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RE | 470..1314 | 15..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:21 Download gff for
BS17625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RE | 470..1314 | 15..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:21 Download gff for
BS17625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13636453..13636525 | 15..87 | 100 | <- | Plus |
| 3R | 13642299..13642427 | 88..216 | 100 | <- | Plus |
| 3R | 13642512..13642755 | 217..460 | 100 | <- | Plus |
| 3R | 13642829..13643103 | 461..735 | 100 | <- | Plus |
| 3R | 13643169..13643209 | 736..776 | 100 | <- | Plus |
| 3R | 13645753..13645835 | 777..859 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:39:33 Download gff for
BS17625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9462175..9462247 | 15..87 | 100 | <- | Plus |
| arm_3R | 9468021..9468149 | 88..216 | 100 | <- | Plus |
| arm_3R | 9468234..9468477 | 217..460 | 100 | <- | Plus |
| arm_3R | 9468551..9468825 | 461..735 | 100 | <- | Plus |
| arm_3R | 9468891..9468931 | 736..776 | 100 | <- | Plus |
| arm_3R | 9471475..9471557 | 777..859 | 98 | | Plus |
BS17625.5prime Sequence
837 bp (796 high quality bases) assembled on 2007-05-29
> BS17625.5prime
GAAGTTATCAGTCGACATGGCCGAGAACAAGCAAGTGGATACAGAAATAA
ACGGCGAGGATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAA
AATGGTGATGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCA
ATCGGCCGCATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTG
GTCTGAGCTGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAA
TATGGCGAGATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCG
GTCCCGAGGATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACA
AAGTCAGCGCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCC
AAGAAGGCCAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCAC
AGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATA
TCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGA
TTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAA
GACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGA
CGCCCAAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGC
GGTGGTATGCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAA
CAACCAGTGGGACGGACAGGGATCATACGGCGGCTATGGCGGCGGCTACG
GCGGATATGGTGCCGGTGGTTATGGCGACTACTATGC
BS17625.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16901-PA | 966 | sqd-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
| CG16901-PB | 1035 | sqd-RB | 1..821 | 17..837 | 4105 | 100 | Plus |
| CG16901-PC | 927 | sqd-RC | 1..821 | 17..837 | 4105 | 100 | Plus |
| CG16901-PD | 537 | sqd-RD | 1..323 | 515..837 | 1615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqd-RC | 2239 | CG16901-RC | 111..931 | 17..837 | 4105 | 100 | Plus |
| sqd-RE | 2844 | CG16901-RE | 386..1206 | 17..837 | 4105 | 100 | Plus |
| sqd-RA | 5551 | CG16901-RA | 115..935 | 17..837 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13642829..13643103 | 499..225 | 1375 | 100 | Minus |
| 3R | 32079331 | 3R | 13642511..13642755 | 744..500 | 1225 | 100 | Minus |
| 3R | 32079331 | 3R | 13645752..13645919 | 184..17 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 13642334..13642428 | 837..743 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 13643169..13643212 | 224..181 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:44:00 has no hits.
BS17625.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:12:24 Download gff for
BS17625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16901-PC | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:02:35 Download gff for
BS17625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RA | 107..935 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:11:18 Download gff for
BS17625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RA | 107..935 | 9..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:11:18 Download gff for
BS17625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13642334..13642427 | 744..837 | 100 | <- | Minus |
| 3R | 13642512..13642755 | 500..743 | 100 | <- | Minus |
| 3R | 13642829..13643103 | 225..499 | 100 | <- | Minus |
| 3R | 13643169..13643209 | 184..224 | 100 | <- | Minus |
| 3R | 13645753..13645925 | 9..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:02:35 Download gff for
BS17625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9468056..9468149 | 744..837 | 100 | <- | Minus |
| arm_3R | 9468234..9468477 | 500..743 | 100 | <- | Minus |
| arm_3R | 9468551..9468825 | 225..499 | 100 | <- | Minus |
| arm_3R | 9468891..9468931 | 184..224 | 100 | <- | Minus |
| arm_3R | 9471475..9471647 | 9..183 | 97 | | Minus |
BS17625.pep Sequence
Translation from 16 to 942
> BS17625.pep
MAENKQVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASG
QRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFA
FIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDE
EIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQK
IAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDG
QGSYGGYGGGYGGYGAGGYGDYYAGGYYNGYDYGYGGGGFNGGKQRGGGG
RQQRHQPY*
BS17625.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqd-PC | 308 | CG16901-PC | 1..308 | 1..308 | 1667 | 100 | Plus |
| sqd-PE | 308 | CG16901-PE | 1..308 | 1..308 | 1667 | 100 | Plus |
| sqd-PB | 344 | CG16901-PB | 1..344 | 1..308 | 1620 | 89.5 | Plus |
| sqd-PA | 321 | CG16901-PA | 1..286 | 1..286 | 1539 | 100 | Plus |
| sqd-PD | 178 | CG16901-PD | 1..178 | 167..308 | 763 | 79.8 | Plus |
