Clone BS17626 Report

Search the DGRC for BS17626

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG1965-RA
Protein status:BS17626.pep: full length peptide match
Sequenced Size:2750

Clone Sequence Records

BS17626.complete Sequence

2750 bp assembled on 2009-12-07

GenBank Submission: KX805153

> BS17626.complete
GAAGTTATCAGTCGACATGTCGCTTTTTCGCAAACCGAAGAAAATTCAGC
GACGCGTGTTCTCCAGCAACGCTGACGAAGAGGAGGACGGCGCATCCTTG
GATCCGGACGCCGAAATGGAGGCGCCACCGCCTCCCATAATTTCGGGCAA
GAGGGAGAAAGAGAAGAGCCGGAAGGCCATAAAGCCGCAGGAGGACAACA
GCAAGCCAAAGGCGCTGCTCAGCTTCGCAGATGATGAGGATGACGGCGAG
GTGTTCCAGGTGCGAAAGTCGTCGCATAGCAAGAAAGTGATGCGCATGCT
GGACAAGGAACGCCGCAAGAAGAAGCGCGAGGAACGGGCGGAAAACAGCG
GACATCCCGGGGGCGAAAATGGTAGTACACAGCATTTAGAGTCGTCCGGT
GGCCCATCATCGGGTCCCCCGAATTCCAACTCGAATCCTGCCAATGCTGG
CAGATATAAAAGTGCCAGCGATCAGAGTAAAAGTAAAAAAAGTGATAATC
ATATGATCCAAACCGAAATACGCACAGACGACTTTGTGCTAGTGGTAAAG
AAATCTGAGACTCCCGAGGCAATTCTGAACGGTAGAGCTGCCCTTTGCGC
TGGACGGGAGGATATGAGCGATGAAGAAGACCAGCAATCCGAGGATGGTG
GCCATGACAAAACGCGTCACCGTTTCTCCAAGCCAGAACATTTGAAACAG
ATGCTCGAAAGTGGTTCCATTCCGGATGCAGCAATGATACACGCTGCCCG
AAAACGTCGGCAAAGGGCTAGAGAACAGGGTGCAGGCGACTATATACCTA
TTGAGGAGCCCAAGGAGCCGGCCAAGCTAAGCAACCGTCTGCCCTGCGAA
GATGTTGAGGGTGATCAGTCGGATGATGAAGAACGCATGGACATGAACGA
TATTACGGGACGCAAAGAGCGTGAAGAGCGGCGCGAGCAATTTTATGCTG
TCGAAAATGATTCCACCGACGGAGATTCAGATCGCGAGATGAACGAGTGG
GAAAACCAGCAGATCCGCAAGGGTGTTACGGCAGCCCAGTTGGTCCATTC
TCAGCATGAAACAGTGCTCTCCCGTTTTATGATCAAGCCTGCCCCGTCGG
GCATCGGAACCGGCATGGACGACGGAGATTCAACAGCGGCACAGTCCACG
TCCACTCTGCTGGAGCAGGCCTATGCTAAAAATGCCCTTGAGCGCACCAA
CTTAGCCGCAGCAGTTCGATCATCCGTCAAAACCAAGAAGGAAAAGGCCA
AGGCTACAGCATTGCGAACTCCTCAGGAAATCCTAGCTGCCATTCAATCG
CGTCTTAGCGAGCTTAAAGAGCGGTCGGCTGATCACAGCGCTAGTATGGC
CAGGATTAGTACAGAACTAAAGGCATTAAAGCTCCAGCAGTTAGAGTGCC
AGCAGAATGCACCGACAGCGGCCGCAAAGTACAAGTTTTACCAAGAAATA
AAGTGCTATGTGAATGACCTTGTCGATTGCCTCTCGGAAAAAGCGCCAGT
AATATACGATCTTGAGAAGCGTGCACTGCAACAGTATGGCAAAAATCAAC
GTTATTTGGTAAACAGACGGAGGCAGGATGTACGTGATCAGGCCAAAGAA
ATCGCCGAATCAGCAAAACCTATAACAGCTGCCTCCCGCCGAACACCTGA
TTATGAAGAACAAGTTCGCCGCGCAGCGGAACGGGAGGGTCGGAGGACAC
GTCGCCGATGCGAGCGCGAGCGCAATGATCTGCTCTCGTCCCACCTGGAT
GGCATGTCAAGCGACGATGAAATTGCCGATCAACAGCAGGAACTGAGTGT
GACTACGATGGCGCAGATAGAATCACAGTCGGTGGACGCCCTTGAAGACG
TTACCGACGACTTTAGCAAGATCGAGCTAATACTAATGAAGTTTTTTGCC
TGGCGTAAAACTGACATGTCGTCATACCAGGACGCATTTGTTAGCCTGTG
CCTTCCAAAAGTCTTGGCTCCGCTGGTGCGACACGAACTTGTTCTTTGGT
CGCCACTGCTGGACGTGTATGCGGATATAGAAAATATGCGTTGGTATCAG
GCCTGCATGCTTTATGCCTCCCAGGCAGATGAAACCGTGGAGCAGCTGAA
AATCGATCCGGATATCAATCTGGTGCCGGCGCTCATCGAAAAGATTGTGC
TGCCCAAGGTGACTGCTCTGGTCACAGAATGCTGGGATCCATTATCTACC
ACACAGACCCTGAGATTGGTTGGGTTCATCAATCGATTAGGTCGCGAGTT
TCCCTTGAGCGGCACAAATAAGCAGCTTAACAAACTGTTTGAATCCATCA
TGGAACGCATGCGGTTAGCCCTAGAAAATGATGTATTTATACCCATTTTT
CCAAAGCAAGTGCAAGAGGCGAAGACCTCATTCTTTCAGAGGCAGTTTTG
CAGTGGTCTAAAGCTGTTTCGAAATTTCCTAAGCTGGCAGGGCATCCTGG
CTGATAAGCTACTGCGTGAGCTGGCGATTGGAGCCCTTCTGAATCGTTAC
CTGTTATTAGCTATGCGAGTCTGCACGCCAAACGATGCCATAAACAAAGC
TTACATCATTGTAAATACCCTGCCTACAGTCTGGTTGTTACCGAACAGCG
AGACCCTCAAGAACATGGAACTTTTTATAGGATATATTAAACAAACATTA
GAGAACTGTGATGCAAGCAATCCAATCTTTATGCAATCCAGCGATAAAGC
CAAGCAAATACTTCAAAGACTACATAGTTTATAAAAGCTTTCTAGACCAT

BS17626.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-RA 2718 CG1965-PA 1..2718 17..2734 13590 100 Plus
CG1965-RB 954 CG1965-PB 1..946 17..962 4730 100 Plus
CG1965-RC 531 CG1965-PC 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-RA 3127 CG1965-RA 110..2828 17..2735 13595 100 Plus
CG1965-RC 3132 CG1965-RC 110..2833 17..2735 13510 99.8 Plus
CG1965-RB 3223 CG1965-RB 1152..2924 963..2735 8865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7069285..7069938 963..1616 3270 100 Plus
3R 32079331 3R 7070025..7070573 1617..2165 2745 100 Plus
3R 32079331 3R 7070894..7071218 2359..2683 1625 100 Plus
3R 32079331 3R 7067787..7068089 236..538 1515 100 Plus
3R 32079331 3R 7068707..7068950 538..781 1220 100 Plus
3R 32079331 3R 7067510..7067729 17..236 1100 100 Plus
3R 32079331 3R 7070631..7070824 2165..2358 970 100 Plus
3R 32079331 3R 7069005..7069188 779..962 920 100 Plus
3R 32079331 3R 7071273..7071325 2683..2735 265 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:17:42 has no hits.

BS17626.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:58 Download gff for BS17626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 99..2814 17..2732 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:49 Download gff for BS17626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 110..2825 17..2732 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:51 Download gff for BS17626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 87..2802 17..2732 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:20 Download gff for BS17626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 110..2825 17..2732 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:20 Download gff for BS17626.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7068708..7068948 539..779 100 -> Plus
3R 7067788..7068089 237..538 100 -> Plus
3R 7069006..7069188 780..962 100 -> Plus
3R 7067510..7067729 17..236 100 -> Plus
3R 7069285..7069938 963..1616 100 -> Plus
3R 7070025..7070573 1617..2165 100 -> Plus
3R 7070632..7070824 2166..2358 100 -> Plus
3R 7070894..7071217 2359..2682 100 -> Plus
3R 7071273..7071322 2683..2732 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:49 Download gff for BS17626.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2894728..2894910 780..962 100 -> Plus
arm_3R 2893232..2893451 17..236 100 -> Plus
arm_3R 2893510..2893811 237..538 100 -> Plus
arm_3R 2894430..2894670 539..779 100 -> Plus
arm_3R 2895007..2895660 963..1616 100 -> Plus
arm_3R 2895747..2896295 1617..2165 100 -> Plus
arm_3R 2896354..2896546 2166..2358 100 -> Plus
arm_3R 2896616..2896939 2359..2682 100 -> Plus
arm_3R 2896995..2897044 2683..2732 100   Plus

BS17626.3prime Sequence

905 bp (794 high quality bases) assembled on 2007-05-29

> BS17626.3prime
ATGGTCTAGAAAGCTTTTATAAACTATGTAGTCTTTGAAGTATTTGCTTG
GCTTTATCGCTGGATTGCATAAAGATTGGATTGCTTGCATCACAGTTCTC
TAATGTTTGTTTAATATATCCTATAAAAAGTTCCATGTTCTTGAGGGTCT
CGCTGTTCGGTAACAACCAGACTGTAGGCAGGGTATTTACAATGATGTAA
GCTTTGTTTATGGCATCGTTTGGCGTGCAGACTCGCATAGCTAATAACAG
GTAACGATTCAGAAGGGCTCCAATCGCCAGCTCACGCAGTAGCTTATCAG
CCAGGATGCCCTGCCAGCTTAGGAAATTTCGAAACAGCTTTAGACCACTG
CAAAACTGCCTCTGAAAGAATGAGGTCTTCGCCTCTTGCACTTGCTTTGG
AAAAATGGGTATAAATACATCATTTTCTAGGGCTAACCGCATGCGTTCCA
TGATGGATTCAAACAGTTTGTTAAGCTGCTTATTTGTGCCGCTCAAGGGA
AACTCGCGACCTAATCGATTGATGAACCCAACCAATCTCAGGGTCTGTGT
GGTAGATAATGGATCCCAGCATTCTGTGACCAGAGCAGTCACCTTGGGCA
GCACAATCTTTTCGATGAGCGCCGGCACCAGATTGATATCCGGATCGATT
TTCAGCTGCTCCACGGTTTCATCTGCCTGGGAGGCATAAAGCATGCAGGC
CTGATACCAACGCATATTTTCTATATCCGCATACACGTCCAGCAGTGGCG
ACCAAAGAACAAGTTCGTGTCGCACCAGCGGAGCCAAGACTTTTGGAAGG
CACAGGCTAACAAATGCGTCCTGGTATGACGACATGTCAGTTTTACGCCA
GGCAAAAAACTCATTAGTATTAGCTCGATCTTGCTAAAGTCGTCGGTAAC
GTCTT

BS17626.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-PA 2718 CG1965-RA 1874..2718 861..17 4225 100 Minus
CG1965-PA 2718 CG1965-RA 1829..1873 905..861 225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-RC 3132 CG1965-RC 1943..2833 905..16 4430 99.9 Minus
CG1965-RB 3223 CG1965-RB 2034..2924 905..16 4430 99.9 Minus
CG1965-RA 3127 CG1965-RA 1938..2828 905..16 4430 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7070894..7071218 392..68 1625 100 Minus
3R 32079331 3R 7070253..7070573 905..586 1555 99.7 Minus
3R 32079331 3R 7070631..7070824 586..393 970 100 Minus
3R 32079331 3R 7071273..7071325 68..16 265 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:00:50 has no hits.

BS17626.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:12:30 Download gff for BS17626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1965-PA 1829..2718 17..905 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:08:38 Download gff for BS17626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 1938..2828 16..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:57 Download gff for BS17626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 1938..2828 16..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:57 Download gff for BS17626.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7070253..7070573 586..905 99 -> Minus
3R 7070632..7070824 393..585 100 -> Minus
3R 7070894..7071217 69..392 100 -> Minus
3R 7071273..7071325 16..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:08:38 Download gff for BS17626.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2895975..2896295 586..905 99 -> Minus
arm_3R 2896354..2896546 393..585 100 -> Minus
arm_3R 2896616..2896939 69..392 100 -> Minus
arm_3R 2896995..2897047 16..68 100   Minus

BS17626.5prime Sequence

931 bp (781 high quality bases) assembled on 2007-05-29

> BS17626.5prime
GAAGTTATCAGTCGACATGTCGCTTTTTCGCAAACCGAAGAAAATTCAGC
GACGCGTGTTCTCCAGCAACGCTGACGAAGAGGAGGACGGCGCATCCTTG
GATCCGGACGCCGAAATGGAGGCGCCACCGCCTCCCATAATTTCGGGCAA
GAGGGAGAAAGAGAAGAGCCGGAAGGCCATAAAGCCGCAGGAGGACAACA
GCAAGCCAAAGGCGCTGCTCAGCTTCGCAGATGATGAGGATGACGGCGAG
GTGTTCCAGGTGCGAAAGTCGTCGCATAGCAAGAAAGTGATGCGCATGCT
GGACAAGGAACGCCGCAAGAAGAAGCGCGAGGAACGGGCGGAAAACAGCG
GACATCCCGGGGGCGAAAATGGTAGTACACAGCATTTAGAGTCGTCCGGT
GGCCCATCATCGGGTCCCCCGAATTCCAACTCGAATCCTGCCAATGCTGG
CAGATATAAAAGTGCCAGCGATCAGAGTAAAAGTAAAAAAAGTGATAATC
ATATGATCCAAACCGAAATACGCACAGACGACTTTGTGCTAGTGGTAAAG
AAATCTGAGACTCCCGAGGCAATTCTGAACGGTAGAGCTGCCCTTTGCGC
TGGACGGGAGGATATGAGCGATGAAGAAGACCAGCAATCCGAGGATGGTG
GCCATGACAAAACGCGTCACCGTTTCTCCAAGCCAGAACATTTGAAACAG
ATGCTCGAAAGTGGTTCCATTCCGGATGCAGCAATGATACACGCTGCCCG
AAAACGTCGGCAAAGGGCTAGAGAACAGGGTGCAGGCGACTATATACCTA
TTGAGGAGCCCAAGGAGCCGGCCAAGCTAAGCAACCGTCTGCCCTGCGAA
GATGTTGAGGGTGATCAGTCGGATGATGAAGAACGCATGGACATGAACGA
TATTACGGGACGCAAAGAGCGTGGAGAGCGG

BS17626.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-PA 2718 CG1965-RA 1..915 17..931 4550 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-RB 3223 CG1965-RB 110..1024 17..931 4560 99.9 Plus
CG1965-RA 3127 CG1965-RA 110..1024 17..931 4560 99.9 Plus
CG1965-RC 3132 CG1965-RC 110..1029 17..931 4500 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7067787..7068089 236..538 1515 100 Plus
3R 32079331 3R 7068707..7068950 538..781 1220 100 Plus
3R 32079331 3R 7067510..7067729 17..236 1100 100 Plus
3R 32079331 3R 7069005..7069157 779..931 750 99.3 Plus
Blast to na_te.dros performed on 2015-02-10 17:23:44 has no hits.

BS17626.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:12:37 Download gff for BS17626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1965-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:39:36 Download gff for BS17626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 100..1024 7..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:26 Download gff for BS17626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 100..1024 7..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:26 Download gff for BS17626.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7069006..7069157 780..931 99   Plus
3R 7067500..7067729 7..236 98 -> Plus
3R 7067788..7068089 237..538 100 -> Plus
3R 7068708..7068948 539..779 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:39:36 Download gff for BS17626.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2893222..2893451 7..236 98 -> Plus
arm_3R 2893510..2893811 237..538 100 -> Plus
arm_3R 2894430..2894670 539..779 100 -> Plus
arm_3R 2894728..2894879 780..931 99   Plus

BS17626.pep Sequence

Translation from 16 to 2733

> BS17626.pep
MSLFRKPKKIQRRVFSSNADEEEDGASLDPDAEMEAPPPPIISGKREKEK
SRKAIKPQEDNSKPKALLSFADDEDDGEVFQVRKSSHSKKVMRMLDKERR
KKKREERAENSGHPGGENGSTQHLESSGGPSSGPPNSNSNPANAGRYKSA
SDQSKSKKSDNHMIQTEIRTDDFVLVVKKSETPEAILNGRAALCAGREDM
SDEEDQQSEDGGHDKTRHRFSKPEHLKQMLESGSIPDAAMIHAARKRRQR
AREQGAGDYIPIEEPKEPAKLSNRLPCEDVEGDQSDDEERMDMNDITGRK
EREERREQFYAVENDSTDGDSDREMNEWENQQIRKGVTAAQLVHSQHETV
LSRFMIKPAPSGIGTGMDDGDSTAAQSTSTLLEQAYAKNALERTNLAAAV
RSSVKTKKEKAKATALRTPQEILAAIQSRLSELKERSADHSASMARISTE
LKALKLQQLECQQNAPTAAAKYKFYQEIKCYVNDLVDCLSEKAPVIYDLE
KRALQQYGKNQRYLVNRRRQDVRDQAKEIAESAKPITAASRRTPDYEEQV
RRAAEREGRRTRRRCERERNDLLSSHLDGMSSDDEIADQQQELSVTTMAQ
IESQSVDALEDVTDDFSKIELILMKFFAWRKTDMSSYQDAFVSLCLPKVL
APLVRHELVLWSPLLDVYADIENMRWYQACMLYASQADETVEQLKIDPDI
NLVPALIEKIVLPKVTALVTECWDPLSTTQTLRLVGFINRLGREFPLSGT
NKQLNKLFESIMERMRLALENDVFIPIFPKQVQEAKTSFFQRQFCSGLKL
FRNFLSWQGILADKLLRELAIGALLNRYLLLAMRVCTPNDAINKAYIIVN
TLPTVWLLPNSETLKNMELFIGYIKQTLENCDASNPIFMQSSDKAKQILQ
RLHSL*

BS17626.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-PA 905 CG1965-PA 1..905 1..905 4617 100 Plus
CG1965-PB 317 CG1965-PB 1..315 1..315 1632 100 Plus
CG1965-PC 176 CG1965-PC 1..175 1..175 898 99.4 Plus
ncm-PA 1330 CG12750-PA 957..1287 16..334 181 24.3 Plus