Clone Sequence Records
BS17627.complete Sequence
2078 bp assembled on 2009-12-07
GenBank Submission: KX803385
> BS17627.complete
GAAGTTATCAGTCGACATGAAGGAACATATGTCCACCAAGCAGCACGAGC
GCAACGAGAAGAAGAAAAAGAAGCTGGCGGCCCTGGCGAACCTGATGGAG
CTCAACGATCGCGATCGATTGCACGAGGCAGAGTTGGCCAAAAAACGCGA
TGCAGAGGTCGAAGTGGAGGAGAAGTCAACAGCGAAGGCGGAGGACGGGG
ACGACGGTTTCATCGTGGTGGGCAGCAAACGCAAGCCGCGAAACCGTCGT
CAAAACAACGAGCTGGAGGCGGATTCACAGACTGCCCCAGGAACATCAGA
TCCTGAAGAGCCGGTGAACAAGAAAATCCGCAATTACGATGCTGGTGGAG
ATAGCCTGCCGCTGGAGATTGGCTCGCTATCCGAGGATCAGTACAATCAG
TTGTCGGCAGAGTTGAGGCGTCGCAAACGGGAGCTGGAGAACGTACCGGC
CTTGCGACTGCGTGAGATGGGTCAGCGCGCCTCCCTGGAGACTCCGCAAG
ATGCTCGTACGCCCATCTTTCTAACCGACATCCAGAACCTGTTGATGTGC
GCTCTCATTGGCCAGAAGAGCCCCTGCCGTCCGGATCGCTGGTGCAGCGT
GGAGAAGTGGCTCAGTCTGTCGCACAGTGTGGTGGTCATTCTGGAGGGAC
TATCTCTCTACCACTATCTGTCTAACGAGACCCAGTTTGAGGCCACCAAC
AGGATATTCAGCACGAAGCTGGAGATGATACTTCCACCGCAGGAGGAGGG
CCAGAAGATTATCGACGAGATAGCCAAGATTCCTCTCACCAATGCGCAGG
CACGCAGACTGATAGACGAGCACGGCTCCCTGGAGTCGGCTGTGGAGCTG
AACAAAGATCCAACTTTGTTTGTAAAGACAATCTTTCCAATCGAAAGCTC
TAAATCTGAGTCGGATGACATGCATGAGGATGACAAGTTCCCACGCACTA
AGCTCCTGCTGTCAGCGCTGCAAATGGTCGACGAGGGCTATCCTATTCCA
TTGCAGGGCGAGCTACACACTCGTTTCCAAAACTTTAAGTTTACCAAGGA
TCTGTATGCACCGGTAACCAATCGCAGTCCTATGTTCGGCGTTGATTGTG
AAATGTGTCACACGGAGGCGGGTTGTAACGAGCTAACCCGAATCTCTATT
GTCAACGAAAATTACGAGACCGTTTATGAAACGCTAGTGTTGCCAAATAA
CCGGATCACCGACTATCTAACCCAATATTCGGGCATAACCGCAGAAATTA
TGGAGCAAGTGACCAAGAGGCTGGATGTTGTGCAAAAGGAAGTGTCCGAA
CTGCTGCCTCCAGATGCCATTCTGGTGGGGCAATCTCTAAATTCTGACTT
GAACGCCATGAAAATGATGCACCCGTATGTAATTGACACCAGCGTGTGCT
TTAACACATCTGGGGTGCGACGACGCAAGACCAAGCTGAAGGATCTGGCC
AAAACCTTTTTACAGGAAATTATCCAGGAGAACATCGATGGTCACGATTC
CATTGAGGATTCGCGAGCCACGCTGAAGCTCGTCAAGAAGAAGCTGGCAA
ACAGCATCGAGTTCGGAGACCAGATCCTCACGCAGCACAAGCAATTACAG
GAGTTGGCGAACGCATCCAGCGGTGATACCATATCCAACAATCTGTTTGC
ACATGTGGCAAAGCGGGATAAGCGCACGGCCATTGTCACGGTCGGCGAGC
TGCAGCCCCGTCTAAAGGAAGTGATCGAAAAGGCGGGAGAGGCAGCGCCC
AAGGATCAAAGTACGTCGGTGCATGTCCACGAGGTATCTACGGCCAAGGA
AGCCATTCGGAAGGTCAATGAAGTTGCACTGGAAAATGCCCTGACAATTG
CCAACCTCCGCGTGCCAGAGCAGGACTTTATATTGGACAGTGCACAGCGG
AGTGTTGCCAAACTGGACAAGACCATTGATCGCCTGTGGAAGTCAGTTGC
GCACAACGGACTCTTCCTCGTCATCATGGGCGGATCCACAGAGTGCTCGA
AGGGTGTAGCCAAAATAGCCATCAAGCGACTAAACGGATCGAATCAGACT
ATGGAAAGTTAGAAGCTTTCTAGACCAT
BS17627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-RA | 2046 | CG8368-PA | 1..2046 | 17..2062 | 10230 | 100 | Plus |
| CG8368-RB | 2046 | CG8368-PB | 1..2046 | 17..2062 | 10230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-RA | 2505 | CG8368-RA | 139..2184 | 17..2062 | 10230 | 100 | Plus |
| CG8368-RB | 2821 | CG8368-RB | 455..2500 | 17..2062 | 10230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6607133..6608418 | 777..2062 | 6430 | 100 | Plus |
| 3L | 28110227 | 3L | 6606317..6607078 | 17..778 | 3810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:06:49 has no hits.
BS17627.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:45 Download gff for
BS17627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RA | 119..2164 | 17..2062 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:13 Download gff for
BS17627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 455..2500 | 17..2062 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:12 Download gff for
BS17627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RA | 119..2164 | 17..2062 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:17 Download gff for
BS17627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 455..2500 | 17..2062 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:17 Download gff for
BS17627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6606317..6607078 | 17..778 | 100 | -> | Plus |
| 3L | 6607135..6608418 | 779..2062 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:13 Download gff for
BS17627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6599417..6600178 | 17..778 | 100 | -> | Plus |
| arm_3L | 6600235..6601518 | 779..2062 | 100 | | Plus |
BS17627.3prime Sequence
941 bp (732 high quality bases) assembled on 2007-05-29
> BS17627.3prime
ATGGTCTAGAAAGCTTCTAACTTTCCATAGTCTGATTCGATCCGTTTAGT
CGCTTGATGGCTATTTTGGCTACACCCTTCGAGCACTCTGTGGATCCGCC
CATGATGACGAGGAAGAGTCCGTTGTGCGCAACTGACTTCCACAGGCGAT
CAATGGTCTTGTCCAGTTTGGCAACACTCCGCTGTGCACTGTCCAATATA
AAGTCCTGCTCTGGCACGCGGAGGTTGGCAATTGTCAGGGCATTTTCCAG
TGCAACTTCATTGACCTTCCGAATGGCTTCCTTGGCCGTAGATACCTCGT
GGACATGCACCGACGTACTTTGATCCTTGGGCGCTGCCTCTCCCGCCTTT
TCGATCACTTCCTTTAGACGGGGCTGCAGCTCGCCGACCGTGACAATGGC
CGTGCGCTTATCCCGCTTTGCCACATGTGCAAACAGATTGTTGGATATGG
TATCACCGCTGGATGCGTTCGCCAACTCCTGTAATTGCTTGTGCTGCGTG
AGGATCTGGTCTCCGAACTCGATGCTGTTTGCCAGCTTCTTCTTGACGAG
CTTCAGCGTGGCTCGCGAATCCTCAATGGAATCGTGACCATCGATGTTCT
CCTGGATAATTTCCTGTAAAAAGGTTTTGGCCAGATCCTTCAGCTTGGTC
TTGCGTCGTCGCACCCCAGATGTGTTAAAGCACACGCTGGTGTCAATTAC
ATACGGGTGCATCATTTTCATGGCGTTCAAGTCAGAATTTAGAGATTGCC
CCACCAGAATGGCATCTGGAGGCAGCAGTTCGGACACTTCCTTTTGCACA
ACATCCAGCCTCTTGGTCACTTGCTCCATAATTTCTGCGGTTATGCCCGA
ATATTGGGTTAGATAGTCGGTGATCCCGGTATTTGGCAACACTAGCGTTT
CATAAACGGTCTCGTATTTTTCGTTGACATAGAGATTCGGG
BS17627.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-PB | 2046 | CG8368-RB | 1134..2046 | 929..17 | 4490 | 99.6 | Minus |
| CG8368-PA | 2046 | CG8368-RA | 1134..2046 | 929..17 | 4490 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-RA | 2505 | CG8368-RA | 1259..2184 | 941..17 | 4560 | 99.6 | Minus |
| CG8368-RB | 2821 | CG8368-RB | 1575..2500 | 941..17 | 4560 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6607493..6608418 | 941..17 | 4535 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:00:18 has no hits.
BS17627.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:12:43 Download gff for
BS17627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-PA | 1121..2046 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:13:52 Download gff for
BS17627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 1575..2510 | 7..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:39:53 Download gff for
BS17627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 1575..2510 | 7..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:39:53 Download gff for
BS17627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6607493..6608428 | 7..941 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:13:52 Download gff for
BS17627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6600593..6601528 | 7..941 | 99 | | Minus |
BS17627.5prime Sequence
849 bp (753 high quality bases) assembled on 2007-05-29
> BS17627.5prime
GAAGTTATCAGTCGACATGAAGGAACATATGTCCACCAAGCAGCACGAGC
GCAACGAGAAGAAGAAAAAGAAGCTGGCGGCCCTGGCGAACCTGATGGAG
CTCAACGATCGCGATCGATTGCACGAGGCAGAGTTGGCCAAAAAACGCGA
TGCAGAGGTCGAAGTGGAGGAGAAGTCAACAGCGAAGGCGGAGGACGGGG
ACGACGGTTTCATCGTGGTGGGCAGCAAACGCAAGCCGCGAAACCGTCGT
CAAAACAACGAGCTGGAGGCGGATTCACAGACTGCCCCAGGAACATCAGA
TCCTGAAGAGCCGGTGAACAAGAAAATCCGCAATTACGATGCTGGTGGAG
ATAGCCTGCCGCTGGAGATTGGCTCGCTATCCGAGGATCAGTACAATCAG
TTGTCGGCAGAGTTGAGGCGTCGCAAACGGGAGCTGGAGAACGTACCGGC
CTTGCGACTGCGTGAGATGGGTCAGCGCGCCTCCCTGGAGACTCCGCAAG
ATGCTCGTACGCCCATCTTTCTAACCGACATCCAGAACCTGTTGATGTGC
GCTCTCATTGGCCAGAAGAGCCCCTGCCGTCCGGATCGCTGGTGCAGCGT
GGAGAAGTGGCTCAGTCTGTCGCACAGTGTGGTGGTCATTCTGGAGGGAC
TATCTCTCTACCACTATCTGTCTAACGAGACCCAGTTTGAGGCCACCAAC
AGGATATTCAGCACGAAGCTGGAGATGATACTTCCACCGCAGGAGGAGGG
CCAGAAGATTATCGACGAGATAGCCAAGATTCCTCTCACCAATGCGCAGG
CACGCAGACTGATAGACGAGCACGGCTCCCTGGAGTCGGCTGTGGAGCT
BS17627.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-PB | 2046 | CG8368-RB | 1..833 | 17..849 | 4165 | 100 | Plus |
| CG8368-PA | 2046 | CG8368-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-RA | 2505 | CG8368-RA | 139..971 | 17..849 | 4165 | 100 | Plus |
| CG8368-RB | 2821 | CG8368-RB | 455..1287 | 17..849 | 4165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6606317..6607078 | 17..778 | 3810 | 100 | Plus |
| 3L | 28110227 | 3L | 6607133..6607205 | 777..849 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:44:04 has no hits.
BS17627.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:12:52 Download gff for
BS17627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:02:38 Download gff for
BS17627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 451..1287 | 9..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:11:32 Download gff for
BS17627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 451..1287 | 9..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:11:32 Download gff for
BS17627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6606313..6607078 | 9..778 | 99 | -> | Plus |
| 3L | 6607135..6607205 | 779..849 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:02:38 Download gff for
BS17627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6599413..6600178 | 9..778 | 99 | -> | Plus |
| arm_3L | 6600235..6600305 | 779..849 | 100 | | Plus |
BS17627.pep Sequence
Translation from 16 to 2061
> BS17627.pep
MKEHMSTKQHERNEKKKKKLAALANLMELNDRDRLHEAELAKKRDAEVEV
EEKSTAKAEDGDDGFIVVGSKRKPRNRRQNNELEADSQTAPGTSDPEEPV
NKKIRNYDAGGDSLPLEIGSLSEDQYNQLSAELRRRKRELENVPALRLRE
MGQRASLETPQDARTPIFLTDIQNLLMCALIGQKSPCRPDRWCSVEKWLS
LSHSVVVILEGLSLYHYLSNETQFEATNRIFSTKLEMILPPQEEGQKIID
EIAKIPLTNAQARRLIDEHGSLESAVELNKDPTLFVKTIFPIESSKSESD
DMHEDDKFPRTKLLLSALQMVDEGYPIPLQGELHTRFQNFKFTKDLYAPV
TNRSPMFGVDCEMCHTEAGCNELTRISIVNENYETVYETLVLPNNRITDY
LTQYSGITAEIMEQVTKRLDVVQKEVSELLPPDAILVGQSLNSDLNAMKM
MHPYVIDTSVCFNTSGVRRRKTKLKDLAKTFLQEIIQENIDGHDSIEDSR
ATLKLVKKKLANSIEFGDQILTQHKQLQELANASSGDTISNNLFAHVAKR
DKRTAIVTVGELQPRLKEVIEKAGEAAPKDQSTSVHVHEVSTAKEAIRKV
NEVALENALTIANLRVPEQDFILDSAQRSVAKLDKTIDRLWKSVAHNGLF
LVIMGGSTECSKGVAKIAIKRLNGSNQTMES*
BS17627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-PA | 681 | CG8368-PA | 1..681 | 1..681 | 3453 | 100 | Plus |
| CG8368-PB | 681 | CG8368-PB | 1..681 | 1..681 | 3453 | 100 | Plus |
| CG12877-PC | 991 | CG12877-PC | 827..990 | 350..514 | 319 | 41.8 | Plus |
| CG42666-PK | 742 | CG42666-PK | 575..726 | 356..506 | 250 | 38.6 | Plus |
| CG42666-PI | 742 | CG42666-PI | 575..726 | 356..506 | 250 | 38.6 | Plus |
