Clone BS17635 Report

Search the DGRC for BS17635

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptSMC2-RA
Protein status:BS17635.pep: full length peptide match
Sequenced Size:3572

Clone Sequence Records

BS17635.3prime Sequence

861 bp (860 high quality bases) assembled on 2007-05-29

> BS17635.3prime
ATGGTCTAGAAAGCTTTCAGCGTTTGTTGGTTGTCGCCTGTCTGCTGACC
TGCCGGGTGATGGTGGACACACCCTCCTCGAAGAGAGTGCGGAACAGGAC
GTTGGCGTGGTTGAAGAGACCATCCTTGAGAGACACAATCAAGAACTGCG
AGTTGGTGAAGTGCTGCTTCAACATACTACCTATGTTTTGGGTGTGTGAC
ATGTCCAGGGCAGCGTCCACCTCATCCAAAATGTACAAGGGAGCCGGAGA
GAACTTAAGCATGGCCAGGACAAGGGACAGAGCCACCAAGGACTTCTGGC
CACCAGAAAGTTCACCGAGACTCTCCTTCCATATGCCATTGAAGCCGACT
TTAATCTCCAAACCGGTCAGACAGCCATTGGTATGGACGGGATTGAGTTT
CGCTTCAGCACCCGGTAAAAGGGAGCTAAAGATCCCACTGAAGTTCGTGT
TCACCTCGGTAGCGGCTTTGTTCAGCTGATCCTGCTCTTCTTCGTCCATC
TTCACTATGATTTTCTTAATCTTCTCCTTGTCCATCGCCACAATGTTTCG
CCGGCGCTCGGTCTCCTTGAAGTTCTCTTCCTCGCGATCCAGCACCATGA
TAGCGTTCATGTTGAGAGTGCGTTCCATTTTGTCCTTTTTCTCCTGCATC
TTTGCCAGCTTGTTGCCTGCTTCGTGGGGGTCCTCCTTGCTGTAATCGTA
CCGAGTATTCTTCATGCCAAAGCAGTTCTTCTCCTCCGGAATCCACGGAT
ACTTTGCCTCAAGGGCTTCCATCCGTTTCTTTGCCTCTTTGGCATCCGAA
CTGATCTTTTTTTGTTCGTTCTCTTTTTTCTTCACCTCCAGCTCAATCTC
CTGATTTTCCT

BS17635.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10212-PA 3540 SMC2-RA 2696..3540 861..17 4225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
SMC2-RA 3690 CG10212-RA 2795..3641 861..15 4235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14848670..14849516 15..861 4235 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:06:25 has no hits.

BS17635.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:13:29 Download gff for BS17635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10212-PA 2696..3540 17..861 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:00 Download gff for BS17635.3prime
Subject Subject Range Query Range Percent Splice Strand
SMC2-RA 2795..3641 15..861 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:34 Download gff for BS17635.3prime
Subject Subject Range Query Range Percent Splice Strand
SMC2-RA 2795..3641 15..861 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:34 Download gff for BS17635.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14848670..14849516 15..861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:00 Download gff for BS17635.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10736175..10737021 15..861 100   Plus

BS17635.5prime Sequence

885 bp (734 high quality bases) assembled on 2007-05-29

> BS17635.5prime
GAAGTTATCAGTCGACATGTATGTTAAGAAACTAGTGCTCGACGGCTTCA
AATCCTATGGCCGGCGCACGGAGATAGAAGGATTCGATCCAGAATTTACG
GCTATCACGGGTCTAAACGGCTCCGGCAAGTCAAACATCTTGGATAGCAT
TTGTTTCGTACTGGGAATTAGTAATCTCCAGAATGTGCGCGCTTCGGCTC
TACAGGATTTGGTGTACAAGAATGGGCAGGCGGGCATTACCAAGGCCACT
GTTACCATTGTGTTTGACAACACAAATCCCGCCCAGTGTCCGCAGGGCTA
CGAAAAGTGCCGGGAGATCTCTGTGACGCGCCAGGTGGTTGTCGGAGGCA
AGAACAAGTTCCTCATCAATGGCAAGCTGGTGCAGAACAAGAAGGTGCAA
GACTTCTTCTGCTCCATCCAGCTAAATGTAAACAATCCCAACTTCCTGAT
CATGCAGGGCAAGATCCAACAAGTGCTAAATATGAAGCCCAAGGAGGTTC
TGTCAATGGTAGAGGAGGCAGCGGGAACCAGTCAGTACAAAACCAAGCGA
GATGCCACCAAAACCCTGATTGAAAAAAAGGAGACCAAAGTGCGGGAGAC
CAAGGTCTTGCTCGACGAGGAGGTGCTGCCAAAGCTGGTTAAGCTGCGCC
AAGAACGCTCCGCCTACCAGGAGTATCAGAAAATCTGCCGCGACATAGAC
TTCCTCATCAGAATTCACATCTCCGCCAAGTATCTCAAGCAATGCGAGAC
CCTCAAGACGGTGGAGGCTAATGAGCACAAAATCGAGGATCGCATAGCGA
ACTGCAAGGCCACTCACGCCAAGAACCTCGCAGAGGTCGAGAGCATTGAA
AACTCCGTGAAGGAGATGCAGCAACAGATCGATGC

BS17635.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10212-PA 3540 SMC2-RA 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
SMC2-RA 3690 CG10212-RA 100..968 17..885 4345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14851565..14851955 885..495 1955 100 Minus
2R 25286936 2R 14852014..14852327 498..185 1570 100 Minus
2R 25286936 2R 14852384..14852554 187..17 855 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:01:07 has no hits.

BS17635.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:13:33 Download gff for BS17635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10212-PA 1..869 17..885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:08:44 Download gff for BS17635.5prime
Subject Subject Range Query Range Percent Splice Strand
SMC2-RA 93..968 9..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:26 Download gff for BS17635.5prime
Subject Subject Range Query Range Percent Splice Strand
SMC2-RA 93..968 9..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:26 Download gff for BS17635.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14851565..14851953 497..885 100 <- Minus
2R 14852016..14852327 185..496 100 <- Minus
2R 14852387..14852561 9..184 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:08:44 Download gff for BS17635.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10739070..10739458 497..885 100 <- Minus
arm_2R 10739521..10739832 185..496 100 <- Minus
arm_2R 10739892..10740066 9..184 97   Minus

BS17635.complete Sequence

3572 bp assembled on 2009-12-08

GenBank Submission: KX806053

> BS17635.complete
GAAGTTATCAGTCGACATGTATGTTAAGAAACTAGTGCTCGACGGCTTCA
AATCCTATGGCCGGCGCACGGAGATAGAAGGATTCGATCCAGAATTTACG
GCTATCACGGGTCTAAACGGCTCCGGCAAGTCAAACATCTTGGATAGCAT
TTGTTTCGTACTGGGAATTAGTAATCTCCAGAATGTGCGCGCTTCGGCTC
TACAGGATTTGGTGTACAAGAATGGGCAGGCGGGCATTACCAAGGCCACT
GTTACCATTGTGTTTGACAACACAAATCCCGCCCAGTGTCCGCAGGGCTA
CGAAAAGTGCCGGGAGATCTCTGTGACGCGCCAGGTGGTTGTCGGAGGCA
AGAACAAGTTCCTCATCAATGGCAAGCTGGTGCAGAACAAGAAGGTGCAA
GACTTCTTCTGCTCCATCCAGCTAAATGTAAACAATCCCAACTTCCTGAT
CATGCAGGGCAAGATCCAACAAGTGCTAAATATGAAGCCCAAGGAGGTTC
TGTCAATGGTAGAGGAGGCAGCGGGAACCAGTCAGTACAAAACCAAGCGA
GATGCCACCAAAACCCTGATTGAAAAAAAGGAGACCAAAGTGCGGGAGAC
CAAGGTCTTGCTCGACGAGGAGGTGCTGCCAAAGCTGGTTAAGCTGCGCC
AAGAACGCTCCGCCTACCAGGAGTATCAGAAAATCTGCCGCGACATAGAC
TTCCTCATCAGAATTCACATCTCCGCCAAGTATCTCAAGCAATGCGAGAC
CCTCAAGACGGTGGAGGCTAATGAGCACAAAATCGAGGATCGCATAGCGA
ACTGCAAGGCCACTCACGCCAAGAACCTCGCAGAGGTCGAGAGCATTGAA
AACTCCGTGAAGGAGATGCAGCAACAGATCGATGCAGAGATGGGTGGCTC
CATCAAAAATCTCGAAACCCAGCTCAGCGCCAAGCGGGCACTAGAAGCTA
CCGCTACGGGTAGCTTGAAGGCGGCCCAGGGAACGATTCAGCAAGATGAG
AAGAAAATTCGCATGGCATCCAAAAACATTGAGGATGATGAACGAGCCCT
GGCAAAAAAAGAAGCGGACATGGCCAAGGTTCAAGGCGAATTTGAAAGCC
TCAAGGAGGCAGATGCCAGGGACTCAAAAGCCTATGAGGACGCCCAAAAG
AAGCTGGAGGCTGTCTCGCAGGGACTCTCCACCAATGAAAACGGAGAAGC
CTCAACACTGCAAGAACAATTGATAGTGGCCAAGGAGCAGTTCAGCGAGG
CACAGACCACCATTAAGACCTCAGAGATCGAGCTGCGTCATACGCGTGGC
GTATTGAAACAGCGTGAGGGTGAGACCCAGACCAACGACGCTGCCTATGT
AAAGGATAAGAAGCTGCATGATCAGTTGGTGGTTGAGATTAAGAACTTAG
AACGGCAGCTACAAAGTCTCGATTACGAGGGCGGTCATTTCGAGAAGCTA
AAGCAGCGACGCAATGATCTGCACATGCGAAAGCGCGATCTGAAACGAGA
GCTGGACCGCTGCAATGCCTCCCGCTATGATCTGCAATACCAGGACCCAG
AACCAAACTTTGATCGGCGTAAGGTGCGTGGTTTGGTAGGCAAGTTGTTC
CAGGTGAAAGACATGCAAAACTCCATGGCTCTAGTCCAGACAGCCGGCGG
AAGTTTATATAGCTACGTGACGGACGATGATGTGACTAGCAAGAAGATCT
TGCAGAGGGGCAATCTTCAGCGTCGTGTCACTTTGATTCCCATCAACAAG
ATTCAATCTGGTTCGCTAAACAGAAATGTGGTAGAATACGCTCAAAACAA
AGTGGGCGCCGAGAATGTCCAATGGGCCATGTCACTGATTGACTATGACC
GCTATTACGAGCCTGTCATGAAGTTTTGCTTTGGCGGAACACTTATCTGC
AAGGACCTCATTGTAGCCAAACAAATCAGCTACGACCCCCGTATTAATTG
TCGTTCTGTGACTTTGGAAGGAGATGTCGTCGATCCCCATGGCACAGTGT
CTGGAGGTGCTGCTCCTAAAGGTGCTAACGTTCTAGAAGAATTGCACGCA
ATTAAGCAAATAGAAAAGGAGTACAGGGAGATCGACTCTGAGATAGCCCA
AGTGGAAAAGCAAATTGCATCCATTGAAAACCAGGCCCTCGCGTTCAACA
AAATGAAGGAAAATCTTGACTTGCGACAGCACGAGCTAACCATGTGCGAG
AACAGGTTGGCCCAAACAACCTTTCAACAGAATCAGGCTGAAATTGAAGA
AATGAGGGAAAGGGTCAAGACCCTAGAGCAGCAAATAATTGACTCCCGTG
AAAAGCAGAAGACCTCGCAAGCCAAAATAGTGGATATCGAGGCGAAGTTG
GCAGATGCAAAGGGTTATCGCGAGCGAGAGCTGAATGCAGCCACCAACGA
GATCAAGGTGACCAAGCAAAGGGCGGAGAAATCTCGTGCGAACTGGAAAA
AGCGAGAGCAGGAGTTCGAAACTCTTCAATTGGAAATTACTGAGCTGCAG
AAAAGTATCGAAACTGCAAAGAAGCAGCACCAGGAAATGATTGATAACCT
CGAAAAGTTTAAGGCCGAGCTAGACGCTCTGAAAGTAAATAGCTCCAGTG
CCGCGTCCGAGGTGACGGAGCTCGAACAGGCGATTAAGGAGCAGAAAGAT
AAACTGAGAGATCAGAACAAGGAGATGCGAAATCAGTTGGTCAAGAAGGA
GAAAATGTTGAAGGAAAATCAGGAGATTGAGCTGGAGGTGAAGAAAAAAG
AGAACGAACAAAAAAAGATCAGTTCGGATGCCAAAGAGGCAAAGAAACGG
ATGGAAGCCCTTGAGGCAAAGTATCCGTGGATTCCGGAGGAGAAGAACTG
CTTTGGCATGAAGAATACTCGGTACGATTACAGCAAGGAGGACCCCCACG
AAGCAGGCAACAAGCTGGCAAAGATGCAGGAGAAAAAGGACAAAATGGAA
CGCACTCTCAACATGAACGCTATCATGGTGCTGGATCGCGAGGAAGAGAA
CTTCAAGGAGACCGAGCGCCGGCGAAACATTGTGGCGATGGACAAGGAGA
AGATTAAGAAAATCATAGTGAAGATGGACGAAGAAGAGCAGGATCAGCTG
AACAAAGCCGCTACCGAGGTGAACACGAACTTCAGTGGGATCTTTAGCTC
CCTTTTACCGGGTGCTGAAGCGAAACTCAATCCCGTCCATACCAATGGCT
GTCTGACCGGTTTGGAGATTAAAGTCGGCTTCAATGGCATATGGAAGGAG
AGTCTCGGTGAACTTTCTGGTGGCCAGAAGTCCTTGGTGGCTCTGTCCCT
TGTCCTGGCCATGCTTAAGTTCTCTCCGGCTCCCTTGTACATTTTGGATG
AGGTGGACGCTGCCCTGGACATGTCACACACCCAAAACATAGGTAGTATG
TTGAAGCAGCACTTCACCAACTCGCAGTTCTTGATTGTGTCTCTCAAGGA
TGGTCTCTTCAACCACGCCAACGTCCTGTTCCGCACTCTCTTCGAGGAGG
GTGTGTCCACCATCACCCGGCAGGTCAGCAGACAGGCGACAACCAACAAA
CGCTGAAAGCTTTCTAGACCAT

BS17635.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
SMC2-RA 3540 CG10212-PA 1..3540 17..3556 17700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
SMC2-RA 3690 CG10212-RA 100..3641 17..3558 17710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14848670..14850109 3558..2119 7200 100 Minus
2R 25286936 2R 14851224..14851955 1226..495 3660 100 Minus
2R 25286936 2R 14850740..14851170 1654..1224 2155 100 Minus
2R 25286936 2R 14852014..14852327 498..185 1570 100 Minus
2R 25286936 2R 14850413..14850682 1924..1655 1350 100 Minus
2R 25286936 2R 14850163..14850356 2118..1925 970 100 Minus
2R 25286936 2R 14852384..14852554 187..17 855 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:30:03 has no hits.

BS17635.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:48 Download gff for BS17635.complete
Subject Subject Range Query Range Percent Splice Strand
SMC2-RA 97..3635 17..3555 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:38 Download gff for BS17635.complete
Subject Subject Range Query Range Percent Splice Strand
SMC2-RA 100..3638 17..3555 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:54 Download gff for BS17635.complete
Subject Subject Range Query Range Percent Splice Strand
SMC2-RA 97..3635 17..3555 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:45 Download gff for BS17635.complete
Subject Subject Range Query Range Percent Splice Strand
SMC2-RA 100..3638 17..3555 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:45 Download gff for BS17635.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14850163..14850356 1925..2118 100 <- Minus
2R 14850413..14850682 1655..1924 100 <- Minus
2R 14848673..14850109 2119..3555 100 <- Minus
2R 14850740..14851167 1227..1654 100 <- Minus
2R 14851224..14851953 497..1226 100 <- Minus
2R 14852016..14852327 185..496 100 <- Minus
2R 14852387..14852554 17..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:38 Download gff for BS17635.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10737668..10737861 1925..2118 100 <- Minus
arm_2R 10737918..10738187 1655..1924 100 <- Minus
arm_2R 10736178..10737614 2119..3555 100 <- Minus
arm_2R 10738245..10738672 1227..1654 100 <- Minus
arm_2R 10738729..10739458 497..1226 100 <- Minus
arm_2R 10739521..10739832 185..496 100 <- Minus
arm_2R 10739892..10740059 17..184 100   Minus

BS17635.pep Sequence

Translation from 16 to 3555

> BS17635.pep
MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLG
ISNLQNVRASALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCRE
ISVTRQVVVGGKNKFLINGKLVQNKKVQDFFCSIQLNVNNPNFLIMQGKI
QQVLNMKPKEVLSMVEEAAGTSQYKTKRDATKTLIEKKETKVRETKVLLD
EEVLPKLVKLRQERSAYQEYQKICRDIDFLIRIHISAKYLKQCETLKTVE
ANEHKIEDRIANCKATHAKNLAEVESIENSVKEMQQQIDAEMGGSIKNLE
TQLSAKRALEATATGSLKAAQGTIQQDEKKIRMASKNIEDDERALAKKEA
DMAKVQGEFESLKEADARDSKAYEDAQKKLEAVSQGLSTNENGEASTLQE
QLIVAKEQFSEAQTTIKTSEIELRHTRGVLKQREGETQTNDAAYVKDKKL
HDQLVVEIKNLERQLQSLDYEGGHFEKLKQRRNDLHMRKRDLKRELDRCN
ASRYDLQYQDPEPNFDRRKVRGLVGKLFQVKDMQNSMALVQTAGGSLYSY
VTDDDVTSKKILQRGNLQRRVTLIPINKIQSGSLNRNVVEYAQNKVGAEN
VQWAMSLIDYDRYYEPVMKFCFGGTLICKDLIVAKQISYDPRINCRSVTL
EGDVVDPHGTVSGGAAPKGANVLEELHAIKQIEKEYREIDSEIAQVEKQI
ASIENQALAFNKMKENLDLRQHELTMCENRLAQTTFQQNQAEIEEMRERV
KTLEQQIIDSREKQKTSQAKIVDIEAKLADAKGYRERELNAATNEIKVTK
QRAEKSRANWKKREQEFETLQLEITELQKSIETAKKQHQEMIDNLEKFKA
ELDALKVNSSSAASEVTELEQAIKEQKDKLRDQNKEMRNQLVKKEKMLKE
NQEIELEVKKKENEQKKISSDAKEAKKRMEALEAKYPWIPEEKNCFGMKN
TRYDYSKEDPHEAGNKLAKMQEKKDKMERTLNMNAIMVLDREEENFKETE
RRRNIVAMDKEKIKKIIVKMDEEEQDQLNKAATEVNTNFSGIFSSLLPGA
EAKLNPVHTNGCLTGLEIKVGFNGIWKESLGELSGGQKSLVALSLVLAML
KFSPAPLYILDEVDAALDMSHTQNIGSMLKQHFTNSQFLIVSLKDGLFNH
ANVLFRTLFEEGVSTITRQVSRQATTNKR*

BS17635.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
SMC2-PA 1179 CG10212-PA 1..1179 1..1179 5934 100 Plus
SMC3-PA 1200 CG9802-PA 1..1181 1..1166 762 23.1 Plus
glu-PA 1409 CG11397-PA 87..1277 1..1154 619 22.6 Plus
SMC1-PA 1238 CG6057-PA 26..1234 2..1176 601 22.2 Plus
zip-PH 1964 CG15792-PH 875..1829 64..1054 258 18.9 Plus