Clone Sequence Records
BS17637.3prime Sequence
865 bp (818 high quality bases) assembled on 2007-05-29
> BS17637.3prime
ATGGTCTAGAAAGCTTCTAGAAGACATAGCCGCGACAGCGCTCGAACACC
GCATCGTTGAGCAGCTGGAACCACTCGCTGGCATAGGTGGAGTCCTCCGC
TGCCCGGAACAGCTGAAGCTTTTCCTGCGCGGGCAGCGCGGAGCAGAGAT
AAAAGCTGATGGCAGTTTCCGTCAGGTCGGCATGGTAGTTCTTCAGCGCC
CACTCGAGCAGGCGCAGGCAGTTGTGTGAGTCCAGGTACTGGATGAGTCT
TTGCTGCAATACCGCCTCCATATCGGGCATGATGTACACGCGGGCCATCT
CGTAGGCCTGCAGCAGGGCGGGGTAATCCGGCTCGGTTAGATGCCGCTCC
TGGCACACGATTAAATGCAGAAAGTAGCGCAGTCCACTGGCAGTGTAATC
TGGCAGCTGAATCTCGCCTTGGTGACCCTCGCGGAAATCACTGTTGAGCA
TCTTGTTGAACACTTCGCTGGTGTCGCAGAGCAGCTGCTTATTAAACCCA
ATGGAGGTGGAATCCGCTCCATGACCAACGAGGAATCGCATGTCGCAGTT
GGCGTGCAGCGGTGCGGTATCATTTGCAATTTGGTTGCAGATTCCTGCTG
TACTCTCCGCTGGTTCGGCTTCTGGCATAACGATGCCCAGGGTATATCGC
GCCATCGATGTCACCGCATCCGCCGCCTCATCTGCGTAGTGGTCCTCGGT
CTTCTTGCGCAGCATCATGTCGAATAGCATATTCAGCGCATTGCCGTCGT
ACAGGAACTGATAGAGCAATCGATGGCTTTTAACTATGTAGGCCACCGAA
ATGGCGGCTCTCTGTTGGGATATCACATCGTCGCAGCGCAGGAGACGCAC
TAGCTCCTCTTGCCA
BS17637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7837-PA | 2928 | CG7837-RA | 2086..2928 | 859..17 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7837-RA | 3158 | CG7837-RA | 2164..3014 | 865..16 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29795841..29796684 | 16..859 | 4220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:12:42 has no hits.
BS17637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:13:54 Download gff for
BS17637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7837-PA | 2080..2928 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:47:52 Download gff for
BS17637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7837-RA | 2165..3014 | 16..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:17 Download gff for
BS17637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7837-RA | 2165..3014 | 16..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:17 Download gff for
BS17637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29795841..29796690 | 16..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:47:52 Download gff for
BS17637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25621563..25622412 | 16..864 | 99 | | Plus |
BS17637.5prime Sequence
839 bp (768 high quality bases) assembled on 2007-05-29
> BS17637.5prime
GAAGTTATCAGTCGACATGTTCTGGACACCAGAGCAAGTGGAGAGCATGC
TGGAAGTGCTAAAGACCTCCACGGATCGAACAGTCATTTACAAATGCCTG
GTGAAGCTGCGCACCGATCTGGTGAAGGATAAAAATGGCATTGTTTTATT
TCGCACTGCTGGGGGCGTTCACATCATGGTGCGACTGATCACCAAGCTGA
ATGAAAAGATAATGGAGGTGGTACTGAGCATACTGGGGAACTGCTGCACC
GACGAACAGTCCTGCATTGAGGCTGTTGAATGCAAGGTGATTCACCCGCT
GGTGACCATTCTGAAGACCATACCTAATCCCCTGATCCAGTGCCGCGCCT
GCCGGATGCTTGGAAACATCGCCAAGAGCAAGAAGGCGTCCCAGTGTCTC
ACAGTGCACTATGCGGCCATTGCACCGGCCATCTGCCACATCATTGAGTC
CACCAGTGCGGTGCAGACCCGCATCATGGCATTCCGCGTCTGCCGTTTCC
TTCTGGCCAGCAGCCAGTTCCTGAAGTACTTCCTCATGGCCAATGGGTTC
CAGCAGCTGATGCGAATTTTTCTGGCCGTGATGAAGAACGAAGAGGCATC
CAAGGAGCCCGTTCCGGACATCGAGATGTCCACGCTGATTGGCCTGAAGA
GGAACCAGCACCGTGAGAAGTATTTCGAGGAGGTAGCCCGGAATTTGGAG
GGTGTTCGCAGTGACATCTTTGACCACCAGATGCTCAAGAATTCCACAAG
GAACTGTGACTATGCGCTGCCCAAGGAAAATGAAGCGGCCGTTGAGCTGG
CCCTCGAGATTCTGAAGTGTCTGGTCCTGATATCCGCGC
BS17637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7837-PA | 2928 | CG7837-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7837-RA | 3158 | CG7837-RA | 86..908 | 17..839 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29798264..29798833 | 839..270 | 2850 | 100 | Minus |
| 3R | 32079331 | 3R | 29799105..29799269 | 181..17 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 29798908..29799002 | 272..178 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:33:24 has no hits.
BS17637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:13:58 Download gff for
BS17637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7837-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:19:44 Download gff for
BS17637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7837-RA | 86..908 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:16 Download gff for
BS17637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7837-RA | 86..908 | 17..839 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:16 Download gff for
BS17637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29798264..29798831 | 272..839 | 100 | <- | Minus |
| 3R | 29798909..29799001 | 179..271 | 100 | <- | Minus |
| 3R | 29799108..29799266 | 20..178 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:19:44 Download gff for
BS17637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25623986..25624553 | 272..839 | 100 | <- | Minus |
| arm_3R | 25624631..25624723 | 179..271 | 100 | <- | Minus |
| arm_3R | 25624830..25624988 | 20..178 | 100 | <- | Minus |
BS17637.complete Sequence
2960 bp assembled on 2010-05-13
GenBank Submission: KX802934
> BS17637.complete
GAAGTTATCAGTCGACATGTTCTGGACACCAGAGCAAGTGGAGAGCATGC
TGGAAGTGCTAAAGACCTCCACGGATCGAACAGTCATTTACAAATGCCTG
GTGAAGCTGCGCACCGATCTGGTGAAGGATAAAAATGGCATTGTTTTATT
TCGCACTGCTGGGGGCGTTCACATCATGGTGCGACTGATCACCAAGCTGA
ATGAAAAGATAATGGAGGTGGTACTGAGCATACTGGGGAACTGCTGCACC
GACGAACAGTCCTGCATTGAGGCTGTTGAATGCAAGGTGATTCACCCGCT
GGTGACCATTCTGAAGACCATACCTAATCCCCTGATCCAGTGCCGCGCCT
GCCGGATGCTTGGAAACATCGCCAAGAGCAAGAAGGCGTCCCAGTGTCTC
ACAGTGCACTATGCGGCCATTGCACCGGCCATCTGCCACATCATTGAGTC
CACCAGTGCGGTGCAGACCCGCATCATGGCATTCCGCGTCTGCCGTTTCC
TTCTGGCCAGCAGCCAGTTCCTGAAGTACTTCCTCATGGCCAATGGGTTC
CAGCAGCTGATGCGAATTTTTCTGGCCGTGATGAAGAACGAAGAGGCATC
CAAGGAGCCCGTTCCGGACATCGAGATGTCCACGCTGATTGGCCTGAAGA
GGAACCAGCACCGTGAGAAGTATTTCGAGGAGGTAGCCCGGAATTTGGAG
GGTGTTCGCAGTGACATCTTTGACCACCAGATGCTCAAGAATTCCACAAG
GAACTGTGACTATGCGCTGCCCAAGGAAAATGAAGCGGCCGTTGAGCTGG
CCCTCGAGATTCTGAAGTGTCTGGTCCTGATATCCGCGCAGCAAATTGGA
CTGAAAGTTTGGGAGTCCATTTCCTGGAATACCTCGCTCGCCTCCATTGT
GTGCTTCGTAAAGGAGGACGGCGACCAACGGGCCTCTGCCCTTAAAATCC
TCTCTAACTTCTGCAAGGATCCCTTCGCCTTCTACATGCTGAGCACTGCG
GATGCCATTGTGGCTGCCTGCGAGATGCTCATGGCTGTGAACATGGCAAA
GCCACTTAGCGAAAGCGAGAGCCGGCACTGCATCAACATAATCTTGACGC
TATCCACCGATGCCTGCAGCCGCTCGAAGATCCGGAGATGTGGGGCACTG
CGCAAGCTGGTGGCCATGATCCGGGACTCCAACTCGCAGAGCGAGCGATC
ATCGCTATTTCACATACTTTACAACTTCCAATATGATAACTTAAGCATGG
AACTCATGCTGTATGAAGGACTAATGCCCATGTTGGTGCGGGAACTAAAC
GATTACCTGACCAGCGATGATGAGCATCACAAACGTCGACGAGACGAGAG
ACTGCAAGGTGGTAAAAAAAGAAAACTGACGGATCCCACAACGCCAGAGA
CGCTGAGCAAGTTCTCAAAAACCCACGAGACCTTAGGATCGGACTTTGAA
TCGCCGAGCAGTTCACCTAGGTCTTATCGCACAACCAGTCCCTGCAGTTC
GCGCAGCATGTCACCGGTGTGCACAGATCTGCTGACGAATGATGACGACG
ACAACTATTCTCCGGCGTGCAGTGATGACGACGAAGATGAGGATGACAGC
ACAAATAATAGCAATTTGGACACAAGAGAGCGGCGCATAGCCGCCAATCG
TTCGCAGCCTTCGAATGTTCTGGATATACTGAAACTAATTGAGGAGGGCA
GCGAACCCATAGATGATCCGCTGTCCGACAAAGAGGATCTCGAGGAACTG
AGCTCGGATGTACCACCGAAACTAGCCCCGTTCCGCAATACAACATGCAA
CACCATTGACATAATAGAAAACCTTATCTATCGCATCACGCTGATGGTGA
ACAAGCGAGTGGAGCTGGGAAAGCCAGAGACGCTCGACACTCTGATTAGA
GCCATCAAATTGTTTGGATCGAACAATAATTTCCCAAATGCCCTGACAAA
TATTCTACTTGAGAGCCAGTTCTTTGCCCAGATAATAAAGCATGGCGTGG
TCCATCAACTGTACCAGTTTACCAAGCTGAAGGAGATTCGCAAAGACGGC
TTCGCCTTCTTGGAGACGTTAACCAATGTGGGAGAATCGAATTATGGCAA
GGAGGAGCTAGTGCGTCTCCTGCGCTGCGACGATGTGATATCCCAACAGA
GAGCCGCCATTTCGGTGGCCTACATAGTTAAAAGCCATCGATTGCTCTAT
CAGTTCCTGTACGACGGCAATGCGCTGAATATGCTATTCGACATGATGCT
GCGCAAGAAGACCGAGGACCACTACGCAGATGAGGCGGCGGATGCGGTGA
CATCGATGGCGCGATATACCCTGGGCATCGTTATGCCAGAAGCCGAACCA
GCGGAGAGTACAGCAGGAATCTGCAACCAAATTGCAAATGATACCGCACC
GCTGCACGCCAACTGCGACATGCGATTCCTCGTTGGTCATGGAGCGGATT
CCACCTCCATTGGGTTTAATAAGCAGCTGCTCTGCGACACCAGCGAAGTG
TTCAACAAGATGCTCAACAGTGATTTCCGCGAGGGTCACCAAGGCGAGAT
TCAGCTGCCAGATTACACTGCCAGTGGACTGCGCTACTTTCTGCATTTAA
TCGTGTGCCAGGAGCGGCATCTAACCGAGCCGGATTACCCCGCCCTGCTG
CAGGCCTACGAGATGGCCCGCGTGTACATCATGCCCGATATGGAGGCGGT
ATTGCAGCAAAGACTCATCCAGTACCTGGACTCACACAACTGCCTGCGCC
TGCTCGAGTGGGCGCTGAAGAACTACCATGCCGACCTGACGGAAACTGCC
ATCAGCTTTTATCTCTGCTCCGCGCTGCCCGCGCAGGAAAAGCTTCAGCT
GTTCCGGGCAGCGGAGGACTCCACCTATGCCAGCGAGTGGTTCCAGCTGC
TCAACGATGCGGTGTTCGAGCGCTGTCGCGGCTATGTCTTCTAGAAGCTT
TCTAGACCAT
BS17637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7837-RA | 2928 | CG7837-PA | 1..2928 | 17..2944 | 14640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7837-RA | 3158 | CG7837-RA | 86..3014 | 17..2945 | 14645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29795841..29796752 | 2945..2034 | 4560 | 100 | Minus |
| 3R | 32079331 | 3R | 29798238..29798833 | 865..270 | 2980 | 100 | Minus |
| 3R | 32079331 | 3R | 29796946..29797497 | 1959..1408 | 2760 | 100 | Minus |
| 3R | 32079331 | 3R | 29797842..29798182 | 1204..864 | 1705 | 100 | Minus |
| 3R | 32079331 | 3R | 29797570..29797777 | 1411..1204 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 29799105..29799269 | 181..17 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 29798908..29799002 | 272..178 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 29796809..29796884 | 2035..1960 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:18:04 has no hits.
BS17637.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 17:26:24 Download gff for
BS17637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7837-RA | 70..2992 | 22..2944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:59 Download gff for
BS17637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7837-RA | 91..3013 | 22..2944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:10 Download gff for
BS17637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7837-RA | 91..3013 | 22..2944 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:10 Download gff for
BS17637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29797570..29797776 | 1205..1411 | 100 | <- | Minus |
| 3R | 29796809..29796884 | 1960..2035 | 100 | <- | Minus |
| 3R | 29797842..29798180 | 866..1204 | 100 | <- | Minus |
| 3R | 29795842..29796750 | 2036..2944 | 100 | <- | Minus |
| 3R | 29796946..29797493 | 1412..1959 | 100 | <- | Minus |
| 3R | 29798238..29798831 | 272..865 | 100 | <- | Minus |
| 3R | 29798909..29799001 | 179..271 | 100 | <- | Minus |
| 3R | 29799108..29799264 | 22..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:59 Download gff for
BS17637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25621564..25622472 | 2036..2944 | 100 | <- | Minus |
| arm_3R | 25622531..25622606 | 1960..2035 | 100 | <- | Minus |
| arm_3R | 25622668..25623215 | 1412..1959 | 100 | <- | Minus |
| arm_3R | 25623292..25623498 | 1205..1411 | 100 | <- | Minus |
| arm_3R | 25623564..25623902 | 866..1204 | 100 | <- | Minus |
| arm_3R | 25623960..25624553 | 272..865 | 100 | <- | Minus |
| arm_3R | 25624631..25624723 | 179..271 | 100 | <- | Minus |
| arm_3R | 25624830..25624986 | 22..178 | 100 | | Minus |
BS17637.pep Sequence
Translation from 16 to 2943
> BS17637.pep
MFWTPEQVESMLEVLKTSTDRTVIYKCLVKLRTDLVKDKNGIVLFRTAGG
VHIMVRLITKLNEKIMEVVLSILGNCCTDEQSCIEAVECKVIHPLVTILK
TIPNPLIQCRACRMLGNIAKSKKASQCLTVHYAAIAPAICHIIESTSAVQ
TRIMAFRVCRFLLASSQFLKYFLMANGFQQLMRIFLAVMKNEEASKEPVP
DIEMSTLIGLKRNQHREKYFEEVARNLEGVRSDIFDHQMLKNSTRNCDYA
LPKENEAAVELALEILKCLVLISAQQIGLKVWESISWNTSLASIVCFVKE
DGDQRASALKILSNFCKDPFAFYMLSTADAIVAACEMLMAVNMAKPLSES
ESRHCINIILTLSTDACSRSKIRRCGALRKLVAMIRDSNSQSERSSLFHI
LYNFQYDNLSMELMLYEGLMPMLVRELNDYLTSDDEHHKRRRDERLQGGK
KRKLTDPTTPETLSKFSKTHETLGSDFESPSSSPRSYRTTSPCSSRSMSP
VCTDLLTNDDDDNYSPACSDDDEDEDDSTNNSNLDTRERRIAANRSQPSN
VLDILKLIEEGSEPIDDPLSDKEDLEELSSDVPPKLAPFRNTTCNTIDII
ENLIYRITLMVNKRVELGKPETLDTLIRAIKLFGSNNNFPNALTNILLES
QFFAQIIKHGVVHQLYQFTKLKEIRKDGFAFLETLTNVGESNYGKEELVR
LLRCDDVISQQRAAISVAYIVKSHRLLYQFLYDGNALNMLFDMMLRKKTE
DHYADEAADAVTSMARYTLGIVMPEAEPAESTAGICNQIANDTAPLHANC
DMRFLVGHGADSTSIGFNKQLLCDTSEVFNKMLNSDFREGHQGEIQLPDY
TASGLRYFLHLIVCQERHLTEPDYPALLQAYEMARVYIMPDMEAVLQQRL
IQYLDSHNCLRLLEWALKNYHADLTETAISFYLCSALPAQEKLQLFRAAE
DSTYASEWFQLLNDAVFERCRGYVF*
BS17637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7837-PA | 975 | CG7837-PA | 1..975 | 1..975 | 5026 | 100 | Plus |
