Clone BS17639 Report

Search the DGRC for BS17639

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptyrt-RA
Protein status:BS17639.pep: full length peptide match
Sequenced Size:2951

Clone Sequence Records

BS17639.complete Sequence

2951 bp assembled on 2009-12-07

GenBank Submission: KX800795

> BS17639.complete
GAAGTTATCAGTCGACATGCTCCGTTTTCTAAGCCGTCGCAAGGTGCGCA
ACAACTATGTGGATAATTCGAGAGAGGGCGGCGGGGCAACTAGTTCCGCG
GTGGGCGTGGCTGGGGGTGGTGGTGCCATCACCTCCGGCGGCAGCTCACA
AATAAAGCCACAACGCATCGTGGTCAACAAGAACAAAATCGACTGCCGCG
TCATTCTGCTGGACAACACTGACCTTTCCATCGAATTATCGAAAAAGGCA
TTGGGCAGCTTTTTGTACGAACAGGTATTCTACGCACTGGACATCATCGA
GAAGGATTACTTTGGGCTGCAGTTCATGGATGCCAATCACGTCAAGCACT
GGCTAGATCCCACCAAGCCCATCAAGAAGCAGGTCAAAATTGGGCCGCCC
TACACGTTCCGGCTGAAGGTGAAGTTTTACTCTTCGGAACCCAATACACT
GCGCGAAGAGCTGACCCGCTACCTGTTCTTCTTGCAACTGAAACAAGATC
TTCTCGAGGGGCGACTCGACTGTCCGGAGGACAAGGCCACCGAACTCTGT
GCTTTGGCATTGCAGTCTGAACTGGGCGACTATGACAATCAGGAGCATTC
CGCCGCCACCGTCTCGGAGTTCCGTTTTGTGCCCGAGCAAACGGAGGACC
TGGAGATAGCCATACTAGACGAGTACAAGACGTGCCGTGGTCTCACACCT
GCTCAAGCAGAAACGGCATTCCTGAACAAGGCCAAGTGGCTGGATATGTA
CGGTGTTGACATGCACACGGTGCTCGGAAAGGATGGCTGCGAATACCACC
TTGGCCTTACGCCCACCGGAATACTTGTTTTCGAACGCGATCAGAAGATC
GGCCTGTTCTTCTGGCCCAAGATCAGTAAGCTGGATTTCAAGAAAAAGAA
ATTGACTCTTATTGTGATCGAGGATGACGACGAGGGAAGAGAGCAGGAGC
ACACCTTTGTCTTCCGGCTGTACAACGAGAAGGCGTGCAAACACCTGTGG
AAGTGCGCCGTGGAGCACCACACCTTCTTCCGGCTTAGGGCGCCGGTCAA
AGGCCCCTCCGCCCGTCAAAACTTCTTCCGTATGGGCTCTCGCTTCCGGT
ATTCCGGTCGCACCGAGTTCCAGACCACGCAGCAGAGTCGAGCCAGGAGA
ACGGTCCAATTTGAGAGACGACCATCGCAGAGATTTGCTAGCCGTCAGTC
GCACCTGTTGCGCGAACGTCAAAAGGCTTCCCAGGAGGCGGCGGTGTCGG
CTGTGGCCTCGGTTAATGCTCGAGCTGCTGCCGCTGCGGCTGCCGCAGCC
GCATCCCAATCGCCTGCACCGGCTACTCCCTTAGTATCTTCCCAAGTATC
GACACCGACTCCTAACAACGATAACAATAACGACGCCTTCGACTCGCTCA
TTTCCACGGATCAGTTCATCACTGTTACACCTTCGCCTTCGGTGCTTACT
GTCATTCAAAACTCTGCCATTATTGAACCGGATGCGGCTTGCAGCGGCTC
CATCAGCTCCTCATCCCAGGCAGCAGCCAACTTTGCTTCGCTGGGTCGCA
ACTCCCTCAAGTCCAACTTCAGCAACGAGGATCCGGCGTACAGCAAGATT
GGATCTATTGGCAAGGCGTCAGGATTGACTGTGAAATTGGATCCAGACTA
CACACCACCATACTCACCGAACGCCACTAAGAACTTTGATGAAACCAATC
CATTTAGAAATGCAACGAGCTCCCACCACGGCAGCTTTGGCAAGGCTTCC
ATTAGCTCCGGTCAGCTCAGTGTTAAGAGCGGCTTGTCGGATAAAGATAG
AGAGCTAGACTCATTGCTTAAGTCCATTGTCAAAGATCCATCCCCATCAG
TGCTAGCAAACGAAGCCATTAATGATGCTAACAGTATCAGGGTGACTATC
AACAAGACCTTCGACATGGACCACAACACGGAGACACTGAAGCGCCTCTC
GAACGCCAACGAGAAACCCAATAACCAAGTGAAACTGGCCAATGTGAACA
CCACGGCCCTGCCGCCTGGCAACATCAAGTGCAATATTTTAAAGGCTCGC
GTTGAGGAGGAGCTGGGTGCCGGAGGCAACGCCAAGCTTACCAATCAGAT
GTTCGTACCGGCCGCCCACAGCAGCAACATGCACACGAGCAACACAAACA
GCAGCAACAACCATGCACACAGCGATGGACCGGATTCCCTGAACGCCACC
TACATATCAGTGGGAGGCGATAAGCTGACGCTCAGCATACCGGAACAGAA
GCCGTCGACGGGTAGTAGCAGTAGTTCCAGCACTTCGAGCACCGCTACCA
CCACCACCAATGGAAATGGACCCTATAGTAATGCCACCTTTGTGTCTGGA
TTCAGTGCACCACTCACTCCGCCGTCGTCGCTGCCTGCGAATCTGAATAA
TACCGGAAGCGGGTGCAATACAACCCTTACCAGTGTGACCACCATCAGCA
CGCCCAGCAGCCCCACCGCCACCGTTAGCACGACCGCCTCGGAGTCAGTG
GCTCCCGCTTTGAGCAACGCCTCGGCCGCCGAAATACTCATTAATGAAAT
ATTCATTAACAACATCATAAACAATAATGCCAGCGGCAGTATCACTGCCG
AAACTGCTGCCAAGCCGGCGGGCAGCTCGACGCCCAGTGCCGGCACCTTG
CTCTTCTCCACGCTCAGTGAACAGGAGCGCTTGGAATCGCAGAAAACCAA
CCAGCAGATGAATCAGAGTCTAAATCTGAATCAAAACCACAGTGAAGTCG
ATGCGCCGCCGAGTGAAAAGAAAACTCCGAGCAATTATCCGGACAGCAGT
CGCATTCCGTTTCCGTCCAGCAGCAACAGCAAAGACATGGTATCGCCCTG
GCTGGTTTCCTCGGAGGTGGTATCGGCACCCAAGGGACGCGAGTCGGCCA
TCATTCGAAAATCCGTTATTACAACCCAGTTGTAAAAGCTTTCTAGACCA
T

BS17639.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
yrt-RA 2919 CG9764-PA 1..2919 17..2935 14595 100 Plus
yrt-RD 2760 CG9764-PD 1..2754 17..2770 13770 100 Plus
yrt-RC 2361 CG9764-PC 1..2196 17..2212 10980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
yrt-RA 4369 CG9764-RA 713..3631 17..2935 14595 100 Plus
yrt-RD 4464 CG9764-RD 713..3466 17..2770 13770 100 Plus
yrt-RC 3811 CG9764-RC 713..2908 17..2212 10980 100 Plus
yrt-RD 4464 CG9764-RD 3559..3726 2768..2935 840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13431865..13432933 1635..567 5345 100 Minus
3R 32079331 3R 13430193..13430751 2770..2212 2795 100 Minus
3R 32079331 3R 13434048..13434272 241..17 1125 100 Minus
3R 32079331 3R 13433065..13433241 566..390 885 100 Minus
3R 32079331 3R 13430922..13431090 2213..2045 845 100 Minus
3R 32079331 3R 13429605..13429771 2935..2769 835 100 Minus
3R 32079331 3R 13431199..13431356 2045..1888 790 100 Minus
3R 32079331 3R 13433307..13433455 389..241 745 100 Minus
3R 32079331 3R 13431669..13431803 1770..1636 675 100 Minus
3R 32079331 3R 13431414..13431537 1891..1768 620 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:46:32 has no hits.

BS17639.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:32 Download gff for BS17639.complete
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 1..2919 17..2935 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:11 Download gff for BS17639.complete
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 711..3627 17..2933 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:22 Download gff for BS17639.complete
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 711..3627 17..2933 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:01 Download gff for BS17639.complete
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 711..3627 17..2933 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:31 Download gff for BS17639.complete
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 713..3629 17..2933 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:31 Download gff for BS17639.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13431199..13431353 1891..2045 100 <- Minus
3R 13431415..13431534 1771..1890 100 <- Minus
3R 13431669..13431803 1636..1770 100 <- Minus
3R 13429607..13429769 2771..2933 100 <- Minus
3R 13430193..13430750 2213..2770 100 <- Minus
3R 13430923..13431089 2046..2212 100 <- Minus
3R 13431865..13432933 567..1635 100 <- Minus
3R 13433065..13433241 390..566 100 <- Minus
3R 13433307..13433454 242..389 100 <- Minus
3R 13434048..13434272 17..241 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:22 Download gff for BS17639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9255329..9255491 2771..2933 100 <- Minus
arm_3R 9255915..9256472 2213..2770 100 <- Minus
arm_3R 9256645..9256811 2046..2212 100 <- Minus
arm_3R 9256921..9257075 1891..2045 100 <- Minus
arm_3R 9257137..9257256 1771..1890 100 <- Minus
arm_3R 9257391..9257525 1636..1770 100 <- Minus
arm_3R 9257587..9258655 567..1635 100 <- Minus
arm_3R 9258787..9258963 390..566 100 <- Minus
arm_3R 9259029..9259176 242..389 100 <- Minus
arm_3R 9259770..9259994 17..241 100   Minus

BS17639.3prime Sequence

885 bp (760 high quality bases) assembled on 2007-05-29

> BS17639.3prime
ATGGTCTAGAAAGCTTTTACAACTGGGTTGTAATAACGGATTTTCGAATG
ATGGCCGACTCGCGTCCCTTGGGTGCCGATACCACCTCCGAGGAAACCAG
CCAGGGCGATACCATGTCTTTGCTGTTGCTGCTGGACGGAAACGGAATGC
GACTGCTGTCCGGATAATTGCTCGGAGTTTTCTTTTCACTCGGCGGCGCA
TCGACTTCACTGTGGTTTTGATTCAGATTTAGACTCTGATTCATCTGCTG
GTTGGTTTTCTGCGATTCCAAGCGCTCCTGTTCACTGAGCGTGGAGAAGA
GCAAGGTGCCGGCACTGGGCGTCGAGCTGCCCGCCGGCTTGGCAGCAGTT
TCGGCAGTGATACTGCCGCTGGCATTATTGTTTATGATGTTGTTAATGAA
TATTTCATTAATGAGTATTTCGGCGGCCGAGGCGTTGCTCAAAGCGGGAG
CCACTGACTCCGAGGCGGTCGTGCTAACGGTGGCGGTGGGGCTGCTGGGC
GTGCTGATGGTGGTCACACTGGTAAGGGTTGTATTGCACCCGCTTCCGGT
ATTATTCAGATTCGCAGGCAGCGACGACGGCGGAGTGAGTGGTGCACTGA
ATCCAGACACAAAGGTGGCATTACTATAGGGTCCATTTCCATTGGTGGTG
GTGGTAGCGGTGCTCGAAGTGCTGGAACTACTGCTACTACCCGTCGACGG
CTTCTGTTCCGGTATGCTGAGCGTCAGCTTATCGCCTCCCACTGATATGT
AGGTGGCGTTCAGGGAATCCGGTCCATCGCTGTGTGCATGGTTGTTGCTG
CTGTTTGTGTTGCTCGTGTGCATGTTGCTGCTGTGGGCGGCCGGTACGAA
CATCTGATTGGTAAGCTTGGCGTTGCTCCGGCACC

BS17639.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9764-PA 2919 yrt-RA 2060..2919 876..17 4300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
yrt-RB 4249 CG9764-RB 2642..3511 885..17 4325 99.9 Minus
yrt-RA 4369 CG9764-RA 2762..3631 885..17 4325 99.9 Minus
yrt-RD 4464 CG9764-RD 2762..3466 885..182 3500 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13430193..13430751 182..740 2795 100 Plus
3R 32079331 3R 13429605..13429771 17..183 835 100 Plus
3R 32079331 3R 13430922..13431059 739..876 690 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:13:17 has no hits.

BS17639.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:12 Download gff for BS17639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9764-PA 2050..2919 17..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:06:36 Download gff for BS17639.3prime
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 2760..3631 11..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:17:57 Download gff for BS17639.3prime
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 2762..3633 11..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:17:57 Download gff for BS17639.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13429600..13429769 11..181 97 <- Plus
3R 13430193..13430750 182..739 100 <- Plus
3R 13430923..13431069 740..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:06:36 Download gff for BS17639.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9255322..9255491 11..181 97 <- Plus
arm_3R 9255915..9256472 182..739 100 <- Plus
arm_3R 9256645..9256791 740..885 99   Plus

BS17639.5prime Sequence

862 bp (721 high quality bases) assembled on 2007-05-29

> BS17639.5prime
GAAGTTATCAGTCGACATGCTCCGTTTTCTAAGCCGTCGCAAGGTGCGCA
ACAACTATGTGGATAATTCGAGAGAGGGCGGCGGGGCAACTAGTTCCGCG
GTGGGCGTGGCTGGGGGTGGTGGTGCCATCACCTCCGGCGGCAGCTCACA
AATAAAGCCACAACGCATCGTGGTCAACAAGAACAAAATCGACTGCCGCG
TCATTCTGCTGGACAACACTGACCTTTCCATCGAATTATCGAAAAAGGCA
TTGGGCAGCTTTTTGTACGAACAGGTATTCTACGCACTGGACATCATCGA
GAAGGATTACTTTGGGCTGCAGTTCATGGATGCCAATCACGTCAAGCACT
GGCTAGATCCCACCAAGCCCATCAAGAAGCAGGTCAAAATTGGGCCGCCC
TACACGTTCCGGCTGAAGGTGAAGTTTTACTCTTCGGAACCCAATACACT
GCGCGAAGAGCTGACCCGCTACCTGTTCTTCTTGCAACTGAAACAAGATC
TTCTCGAGGGGCGACTCGACTGTCCGGAGGACAAGGCCACCGAACTCTGT
GCTTTGGCATTGCAGTCTGAACTGGGCGACTATGACAATCAGGAGCATTC
CGCCGCCACCGTCTCGGAGTTCCGTTTTGTGCCCGAGCAAACGGAGGACC
TGGAGATAGCCATACTAGACGAGTACAAGACGTGCCGTGGTCTCACACCT
GCTCAAGCAGAAACGGCATTCCTGAACAAGGCCAAGTGGCTGGATATGTA
CGGTGTTGACATGCACACGGTGCTCGGAAAGGATGGCTGCGAATACCACC
TTGGCCTTACGCCCACCGGAATACTTGTTTTCGAACGCGATCAGAAGATC
GGGCTGTTCTTC

BS17639.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9764-PA 2919 yrt-RA 1..846 17..862 4205 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
yrt-RD 4464 CG9764-RD 713..1558 17..862 4215 99.9 Plus
yrt-RC 3811 CG9764-RC 713..1558 17..862 4215 99.9 Plus
yrt-RB 4249 CG9764-RB 713..1558 17..862 4215 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13432638..13432933 862..567 1465 99.7 Minus
3R 32079331 3R 13434048..13434272 241..17 1125 100 Minus
3R 32079331 3R 13433065..13433241 566..390 885 100 Minus
3R 32079331 3R 13433307..13433455 389..241 745 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:36:06 has no hits.

BS17639.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:16 Download gff for BS17639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9764-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:52:41 Download gff for BS17639.5prime
Subject Subject Range Query Range Percent Splice Strand
yrt-RB 704..1556 9..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:14 Download gff for BS17639.5prime
Subject Subject Range Query Range Percent Splice Strand
yrt-RB 706..1558 9..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:14 Download gff for BS17639.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13432638..13432933 567..862 99 <- Minus
3R 13433065..13433241 390..566 100 <- Minus
3R 13433307..13433454 242..389 100 <- Minus
3R 13434048..13434279 9..241 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:52:41 Download gff for BS17639.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9258360..9258655 567..862 99 <- Minus
arm_3R 9258787..9258963 390..566 100 <- Minus
arm_3R 9259029..9259176 242..389 100 <- Minus
arm_3R 9259770..9260001 9..241 98   Minus

BS17639.pep Sequence

Translation from 16 to 2934

> BS17639.pep
MLRFLSRRKVRNNYVDNSREGGGATSSAVGVAGGGGAITSGGSSQIKPQR
IVVNKNKIDCRVILLDNTDLSIELSKKALGSFLYEQVFYALDIIEKDYFG
LQFMDANHVKHWLDPTKPIKKQVKIGPPYTFRLKVKFYSSEPNTLREELT
RYLFFLQLKQDLLEGRLDCPEDKATELCALALQSELGDYDNQEHSAATVS
EFRFVPEQTEDLEIAILDEYKTCRGLTPAQAETAFLNKAKWLDMYGVDMH
TVLGKDGCEYHLGLTPTGILVFERDQKIGLFFWPKISKLDFKKKKLTLIV
IEDDDEGREQEHTFVFRLYNEKACKHLWKCAVEHHTFFRLRAPVKGPSAR
QNFFRMGSRFRYSGRTEFQTTQQSRARRTVQFERRPSQRFASRQSHLLRE
RQKASQEAAVSAVASVNARAAAAAAAAAASQSPAPATPLVSSQVSTPTPN
NDNNNDAFDSLISTDQFITVTPSPSVLTVIQNSAIIEPDAACSGSISSSS
QAAANFASLGRNSLKSNFSNEDPAYSKIGSIGKASGLTVKLDPDYTPPYS
PNATKNFDETNPFRNATSSHHGSFGKASISSGQLSVKSGLSDKDRELDSL
LKSIVKDPSPSVLANEAINDANSIRVTINKTFDMDHNTETLKRLSNANEK
PNNQVKLANVNTTALPPGNIKCNILKARVEEELGAGGNAKLTNQMFVPAA
HSSNMHTSNTNSSNNHAHSDGPDSLNATYISVGGDKLTLSIPEQKPSTGS
SSSSSTSSTATTTTNGNGPYSNATFVSGFSAPLTPPSSLPANLNNTGSGC
NTTLTSVTTISTPSSPTATVSTTASESVAPALSNASAAEILINEIFINNI
INNNASGSITAETAAKPAGSSTPSAGTLLFSTLSEQERLESQKTNQQMNQ
SLNLNQNHSEVDAPPSEKKTPSNYPDSSRIPFPSSSNSKDMVSPWLVSSE
VVSAPKGRESAIIRKSVITTQL*

BS17639.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
yrt-PA 972 CG9764-PA 1..972 1..972 4955 100 Plus
yrt-PB 932 CG9764-PB 1..932 1..972 4713 95.9 Plus
yrt-PD 919 CG9764-PD 1..918 1..918 4685 100 Plus
yrt-PC 786 CG9764-PC 1..752 1..755 3768 97.7 Plus
CG34347-PE 1512 CG34347-PE 6..341 47..389 681 41.3 Plus
yrt-PC 786 CG9764-PC 414..786 677..972 301 32.2 Plus