Clone Sequence Records
BS17640.complete Sequence
3194 bp assembled on 2010-07-15
GenBank Submission: KX801625
> BS17640.complete
GAAGTTATCAGTCGACATGGAGAGCAGGACCCAAATGAATCAGTCGAACC
AGCAACAGCAGCAGCAGAGGAATCGCCTGCCCTCCTCGCCAAGTCCACCG
CTGAGTGTGGTCAGTCTCACTGGCGGTCCGAATGCCAACACAACCTTGAT
GGGCCTTGAGCACGATGCAGTGCCCTCGTCGCAGCTGGGCAGGAACAACA
ACAACGGAGGTGGCCACCATCGGAGTCACAGCATTACCAATGCAGCGACC
ACATCACTGGCGAATCTTCTGGACGGATTTACAGCGCGCGTCTCCACAGC
GGCAGCTGCTGCGGCGGCCACGGCTACAACCACAGAGGTGGTGGTGGCGG
CCGCCTCTGTGATCACCAACCACCTCAGCTCACCCACCAGCGGCACTCCG
CCCCACGGCCTGGATGTAGATGAGGGCGACGACGAGTGCGACGACTGTGA
GGAGGACGAAGACGATCCGGTGGACAACGATGGACACATTGCCGCCCCCA
CGCCGAACAAAAGCTGGGCCGAGAACAAGCAAGTGGTGCAGGAGATACGC
AAGAAGATGTGCAACCTGTCCTCCATGGTGCCCACCAATGTGCAGTTCCG
CCACTTGTCAGATGGACGTGCCAGGTGCTACTTCCTCGGCACTCCGCCGC
AAAGCTGGGAGACTACGCTGCTCTTTGCCGACATTAACCTAACGCAGTCG
GAGGAGCAGCAGTTATTGGTGCAGCGACTGGAGGGGATTGCATCTGATGA
GTGGAGTCCCACTATGAATGCAGGATCCCCCACCAGTAGCGGCCACCAGC
CAGCGTTTCTTTTCAATTCCCTGCCCAGGCCTAGACTCCCATGGAGTCCA
CTATTACAGCAACCCATTCAAAGTAGTGGGGGCAGCGGAGGCAGTGGATC
GGCCAGTCCCTATGCTCGGGAGTATCAACTACTGCAGGAGCGCAAACGCC
TCTCAACCTGGGGCATTACCAGCTACGAGTTACACAAGCCCTCGGGAAAA
CTGGTATTCCCCTGCTTCAACGACCTATATCAATGCCTGGACACAGGATA
CAATTCTGGGCTGCTGTTTCCCACGCAGCTACGCACCTGCCCCCAATGGA
CGGCTCTGGATCCGCAGATTTGTCCACAGAACTCCGACATGATAGCCTAC
ATCAGTGATTGCGATCTGTTTGTCACTCACACGCTCAGTGGGCACGAAAA
GCGCCTCACTTACACGTCCACCGGGCGGCATTCGTATGTGGACGATGCAT
TGAGTGCCGGTGTGCCCTCTTACGTGATGCAGGAGGAGTTTAGCCGCTAC
CAAGGCTTCTGGTGGCAGCCACATTCCAATGACGGTATCTACCGCATTGT
CTACGAGGAGGTGGATGAATCTGAGGTCTCCGTGTACACGTTTCCATCAT
CAACGGCAATGCACGGCAGGGTAGACGAGTACCGCTTTCCCCGCACCGGT
AGCCCAAACGCCAAGTCCAAGCTCAAGCTGGTTCAGTTCGTACTGAACGA
GGCACTGCAGGTCAGCGAAATTGCCATCAAGGATCTGCCCTACTCCCTGT
TGGCTGTTTTTAGCTGGTTAGAGTACATTGTACGTGTCGGCTGGACACCG
GATGCTAAATACGTATGGGTTCAAGGACTGGATCGAAAGCAGCAGCGGCT
GGACGTAATCCTTATTCCACTGGACAACTTCTGCGAGTCCTACAGCAGTC
AGGTTTCAACGCCGACCGACTCAATAGGCGACCACAGCTGGCGCAGCCTG
TACAGTCGCACAATCACGCCACTGCAGGTTATATACACGGAACGCTCGGA
TAGCTGGATTAATGTGCATGATATGCTTCACTTCCTGGATCTGACGGAAA
CAAGCGTCACCTTCTTGTGGGCATCTGAGGAGACTGGTTTTCGTCACCTT
TATTTGGTGACCGCCAGCTTGTTGTTGAGCCAAGCAAATGGACAGCCAGA
TCCCGGATCCGTTGGCGCGCAGCCCAGTTTCGTGGATCTATCGGCACTGC
AACCGCGCATCCTCAACAAGGTGGCCTTGACCAGCGGAGAGTGGGAGGTG
CTGGCCAGGAATCTCTGGGTGGACAAGGCCAACAAGCTGGTGTACTTTGT
GGGACTTCGAGATACGCCGCTAGAAAAACACCTGTACGTTGTGAGTCTGG
AGCGGCCCGAACACATTCGCCTGCTAACGGAGCCAGGTTACTCATACCTC
GTGGAATTCGATGATCATTTTAACGATCTTTTCCCAATTTTCTCACAGCA
ATGCAAGTTGATGCTGCTCGTTTACTGCAACATACAGCGGCTGCCCAGTT
GCAAGGTGATGCGCGTTAACCAGACATGCTCGAACGGTGGAGTCAACGGC
ATTCAGATTTCACTTGTTGGCTATCTCCACGAAGGCGGAAAGCCGGAGCC
GCAGTACTGTCCGCAAATTTTCTCGCCGCAGTTGCCGTCGGGAGATATCG
TGTATGCCATGGTTTTCAAGCCGCACAATTTTGAGTTGGGTGTCAAGTAT
CCCACGGTGCTCAATGTTTACGGAGGACCCGAGGTGCAGACCGTGAACAA
CACATTTAAGGGAAAACATCAATTGCGGATGCATATGCTGGCCGCGCAGG
GATATTGTGTCATCTGCATCGACTCTCGAGGATCGCGGCATCGAGGCAAG
CGATTCGAAAGTCACATCCGTGGTCGGATGGGTCAGGTGGAGCTGACGGA
TCAGGTGGATGCGCTGCGGAGCTTGTCTGACCAGTTGGGCTACATTGACA
TGGATCGCGTGGCCATTCACGGGTGGTCATACGGGGGCTATCTTAGCCTG
ATGGGCCTGGTTCAGTATCCGAAAATCTTTAAAGTGGCCATTGCCGGAGC
GCCGGTCACCAACTGGGAGTATTACGATACGGGCTACACGGAACGATACA
TGGATATGCCGCAAAATAACGAGGCCGGTTACTCAGCCGGTTCGGTGCTC
GAATACGTAAACTCTTTTCCCGAAGAGGACAAACGCCTGCTGCTCATACA
CGGCCTGATCGACGAGAACGTGCACTTCTGCCACACCTCGCGTCTGATCA
GTGCTTTGAACAAGGCAAACAAGCCGTACGAGGTGCATCTGTTCCCCGAG
GAGCGGCATTCGTTGCGTAATCTGGAATCGAATAAAAACTACGAAACTAA
ATTACTGTCATTCTTGCAAAACTTATGAAAGCTTTCTAGACCAT
BS17640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3744-RF | 3129 | CG3744-PF | 1..2201 | 17..2217 | 11005 | 100 | Plus |
| CG3744-RE | 3129 | CG3744-PE | 1..2201 | 17..2217 | 11005 | 100 | Plus |
| CG3744-RG | 3309 | CG3744-PG | 465..2381 | 301..2217 | 9585 | 100 | Plus |
| CG3744-RF | 3129 | CG3744-PF | 2200..3129 | 2249..3178 | 4650 | 100 | Plus |
| CG3744-RE | 3129 | CG3744-PE | 2200..3129 | 2249..3178 | 4650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3744-RF | 4543 | CG3744-RF | 664..2865 | 16..2217 | 11010 | 100 | Plus |
| CG3744-RE | 3699 | CG3744-RE | 417..2618 | 16..2217 | 11010 | 100 | Plus |
| CG3744-RG | 4476 | CG3744-RG | 882..2798 | 301..2217 | 9585 | 100 | Plus |
| CG3744-RF | 4543 | CG3744-RF | 2864..3793 | 2249..3178 | 4650 | 100 | Plus |
| CG3744-RE | 3699 | CG3744-RE | 2617..3546 | 2249..3178 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:46:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24873359..24873962 | 2215..1612 | 3020 | 100 | Minus |
| 3R | 32079331 | 3R | 24874103..24874659 | 1611..1055 | 2785 | 100 | Minus |
| 3R | 32079331 | 3R | 24874993..24875526 | 834..301 | 2670 | 100 | Minus |
| 3R | 32079331 | 3R | 24872937..24873282 | 2561..2216 | 1730 | 100 | Minus |
| 3R | 32079331 | 3R | 24875705..24875991 | 302..16 | 1435 | 100 | Minus |
| 3R | 32079331 | 3R | 24872653..24872878 | 2784..2559 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 24874714..24874936 | 1054..832 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 24871952..24872153 | 3178..2977 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 24872218..24872412 | 2977..2783 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:46:57 has no hits.
BS17640.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:39 Download gff for
BS17640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3744-RA | 655..3815 | 17..3177 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:27 Download gff for
BS17640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3744-RE | 418..2624 | 17..2223 | 99 | == | Plus |
| CG3744-RE | 2625..3545 | 2257..3177 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:50 Download gff for
BS17640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3744-RE | 418..2624 | 17..2223 | 99 | == | Plus |
| CG3744-RE | 2625..3545 | 2257..3177 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:50 Download gff for
BS17640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24871953..24872153 | 2977..3177 | 100 | <- | Minus |
| 3R | 24872219..24872411 | 2784..2976 | 100 | <- | Minus |
| 3R | 24872654..24872876 | 2561..2783 | 100 | <- | Minus |
| 3R | 24872938..24873282 | 2216..2560 | 100 | <- | Minus |
| 3R | 24873359..24873962 | 1612..2215 | 100 | <- | Minus |
| 3R | 24874103..24874659 | 1055..1611 | 100 | <- | Minus |
| 3R | 24874714..24874933 | 835..1054 | 100 | <- | Minus |
| 3R | 24874993..24875525 | 302..834 | 100 | <- | Minus |
| 3R | 24875706..24875990 | 17..301 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:27 Download gff for
BS17640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20697941..20698133 | 2784..2976 | 100 | <- | Minus |
| arm_3R | 20698376..20698598 | 2561..2783 | 100 | <- | Minus |
| arm_3R | 20697675..20697875 | 2977..3177 | 100 | <- | Minus |
| arm_3R | 20698660..20699004 | 2216..2560 | 100 | <- | Minus |
| arm_3R | 20699081..20699684 | 1612..2215 | 100 | <- | Minus |
| arm_3R | 20699825..20700381 | 1055..1611 | 100 | <- | Minus |
| arm_3R | 20700436..20700655 | 835..1054 | 100 | <- | Minus |
| arm_3R | 20700715..20701247 | 302..834 | 100 | <- | Minus |
| arm_3R | 20701428..20701712 | 17..301 | 100 | | Minus |
BS17640.3prime Sequence
933 bp (853 high quality bases) assembled on 2007-05-29
> BS17640.3prime
ATGGTCTAGAAAGCTTTCATAAGTTTTGCAAGAATGACAGTAATTTAGTT
TCGTAGTTTTTATTCGATTCCAGATTACGCAACGAATGCCGCTCCTCGGG
GAACAGATGCACCTCGTACGGCTTGTTTGCCTTGTTCAAAGCACTGATCA
GACGCGAGGTGTGGCAGAAGTGCACGTTCTCGTCGATCAGGCCGTGTATG
AGCAGCAGGCGTTTGTCCTCTTCGGGAAAAGAGTTTACGTATTCGAGCAC
CGAACCGGCTGAGTAACCGGCCTCGTTATTTTGCGGCATATCCATGTATC
GTTCCGTGTAGCCCGTATCGTAATACTCCCAGTTGGTGACCGGCGCTCCG
GCAATGGCCACTTTAAAGATTTTCGGATACTGAACCAGGCCCATCAGGCT
AAGATAGCCCCCGTATGACCACCCGTGAATGGCCACGCGATCCATGTCAA
TGTAGCCCAACTGGTCAGACAAGCTCCGCAGCGCATCCACCTGATCCGTC
AGCTCCACCTGACCCATCCGACCACGGATGTGACTTTCGAATCGCTTGCC
TCGATGCCGCGATCCTCGAGAGTCGATGCAGATGACACAATATCCCTGCG
CGGCCAGCATATGCATCCGCAATTGATGTTTTCCCTTAAATGTGTTGTTC
ACGGTCTGCACCTCGGGTCCTCCGTAAACATTGAGCACCGTGGGATACTT
GACACCCAACTCAAAATTGTGCGGCTTGAAAACCATGGCATACACGATAT
CTCCCGACGGCAACTGCGGCGAGAAAATTTGCGGACAGTACTGCGGCTCC
GGCTTTCCGCCTTCGTGGAGATAGCCAACAAGTGAAATCTGAATGCCGTT
GACTCCACCGTTCGAGCATGTCTGGTTAACGCGCATCACCTTGCAACTGG
GCAGCCGCTGTATGTTGCAGTAAACGAGCAGCA
BS17640.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3744-PC | 3162 | CG3744-RC | 2246..3162 | 933..17 | 4585 | 100 | Minus |
| CG3744-PA | 3162 | CG3744-RA | 2246..3162 | 933..17 | 4585 | 100 | Minus |
| CG3744-PB | 3342 | CG3744-RB | 2426..3342 | 933..17 | 4585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3744-RG | 4476 | CG3744-RG | 2810..3726 | 933..17 | 4585 | 100 | Minus |
| CG3744-RF | 4543 | CG3744-RF | 2877..3793 | 933..17 | 4585 | 100 | Minus |
| CG3744-RE | 3699 | CG3744-RE | 2630..3546 | 933..17 | 4585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24872937..24873236 | 634..933 | 1500 | 100 | Plus |
| 3R | 32079331 | 3R | 24872653..24872878 | 411..636 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 24871952..24872153 | 17..218 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 24872218..24872412 | 218..412 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:43:38 has no hits.
BS17640.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:21 Download gff for
BS17640.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3744-PB | 2427..3342 | 17..932 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:17 Download gff for
BS17640.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3744-RE | 2631..3550 | 11..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:46 Download gff for
BS17640.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3744-RE | 2631..3550 | 11..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:46 Download gff for
BS17640.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24872654..24872876 | 412..634 | 100 | <- | Plus |
| 3R | 24871948..24872153 | 11..218 | 98 | <- | Plus |
| 3R | 24872219..24872411 | 219..411 | 100 | <- | Plus |
| 3R | 24872938..24873235 | 635..932 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:17 Download gff for
BS17640.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20697670..20697875 | 11..218 | 98 | <- | Plus |
| arm_3R | 20697941..20698133 | 219..411 | 100 | <- | Plus |
| arm_3R | 20698376..20698598 | 412..634 | 100 | <- | Plus |
| arm_3R | 20698660..20698957 | 635..932 | 100 | | Plus |
BS17640.pep Sequence
Translation from 16 to 3177
> BS17640.pep
MESRTQMNQSNQQQQQQRNRLPSSPSPPLSVVSLTGGPNANTTLMGLEHD
AVPSSQLGRNNNNGGGHHRSHSITNAATTSLANLLDGFTARVSTAAAAAA
ATATTTEVVVAAASVITNHLSSPTSGTPPHGLDVDEGDDECDDCEEDEDD
PVDNDGHIAAPTPNKSWAENKQVVQEIRKKMCNLSSMVPTNVQFRHLSDG
RARCYFLGTPPQSWETTLLFADINLTQSEEQQLLVQRLEGIASDEWSPTM
NAGSPTSSGHQPAFLFNSLPRPRLPWSPLLQQPIQSSGGSGGSGSASPYA
REYQLLQERKRLSTWGITSYELHKPSGKLVFPCFNDLYQCLDTGYNSGLL
FPTQLRTCPQWTALDPQICPQNSDMIAYISDCDLFVTHTLSGHEKRLTYT
STGRHSYVDDALSAGVPSYVMQEEFSRYQGFWWQPHSNDGIYRIVYEEVD
ESEVSVYTFPSSTAMHGRVDEYRFPRTGSPNAKSKLKLVQFVLNEALQVS
EIAIKDLPYSLLAVFSWLEYIVRVGWTPDAKYVWVQGLDRKQQRLDVILI
PLDNFCESYSSQVSTPTDSIGDHSWRSLYSRTITPLQVIYTERSDSWINV
HDMLHFLDLTETSVTFLWASEETGFRHLYLVTASLLLSQANGQPDPGSVG
AQPSFVDLSALQPRILNKVALTSGEWEVLARNLWVDKANKLVYFVGLRDT
PLEKHLYVVSLERPEHIRLLTEPGYSYLVEFDDHFNDLFPIFSQQCKLML
LVYCNIQRLPSCKVMRVNQTCSNGGVNGIQISLVGYLHEGGKPEPQYCPQ
IFSPQLPSGDIVYAMVFKPHNFELGVKYPTVLNVYGGPEVQTVNNTFKGK
HQLRMHMLAAQGYCVICIDSRGSRHRGKRFESHIRGRMGQVELTDQVDAL
RSLSDQLGYIDMDRVAIHGWSYGGYLSLMGLVQYPKIFKVAIAGAPVTNW
EYYDTGYTERYMDMPQNNEAGYSAGSVLEYVNSFPEEDKRLLLIHGLIDE
NVHFCHTSRLISALNKANKPYEVHLFPEERHSLRNLESNKNYETKLLSFL
QNL*
BS17640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3744-PF | 1042 | CG3744-PF | 1..1042 | 1..1053 | 5513 | 99 | Plus |
| CG3744-PE | 1042 | CG3744-PE | 1..1042 | 1..1053 | 5513 | 99 | Plus |
| CG3744-PG | 1102 | CG3744-PG | 1..1102 | 1..1053 | 5280 | 91.3 | Plus |
| CG3744-PD | 1102 | CG3744-PD | 1..1102 | 1..1053 | 5280 | 91.3 | Plus |
| ome-PH | 784 | CG42280-PH | 201..758 | 415..1036 | 372 | 24.6 | Plus |
