Clone Sequence Records
BS17644.3prime Sequence
911 bp (767 high quality bases) assembled on 2007-05-29
> BS17644.3prime
ATGGTCTAGAAAGCTTTTAAATGCCACAAGTTCGGTGATGTGTGTCCCAA
TCGCTCAGCTGGCATTCACGACTGCAGTACCATTGATTCTGACAGTTGGA
GCACATAAAGGTGGCTCCATAGAGCTTGCACTCGTGGCATTGTCTACCTG
TGTTACCGTTGATGGTGGCGGAAGATTCAGCCTGGGACTTATGGGAGCTC
CTATGCTTGTGAGACTTGTGCTTATGCGACTTGCGCTTGTGAGACTTGTG
CCTCTTTTGGACATTCTCATGGTCGTTGATATTAGCGGAATGTTGTTCTT
GGTAGGACTGTCTATTGGCCAGTTGGCGACGGGAGGCCATCGGACTGCTG
TTGAACAGCGGTTCGATCTGTGATTCATTATCCGAATTATTGTCCTCCAT
TGAGACGTTACTAAAATGCGAATAATTTTTCCAAGCCCTAATCTTGCGAA
GCGTCTCTGAAAGATTGGCTGACAAATGTGTCGAGGAGCTTGCCATGTCC
TGGTTACTGTCTTGCGAGTGGATTAGCTTCGGTCGCTTGGCTGGCGGATC
TCTGTCTGGATTGCTATCTAGCAGATGGTCATTTACCGCATTCCGAGATT
CGTAATGCTGATCCCGCATTGATAGATGACTTACGGGCAAGGAATCTCTA
CGAAAAAGCATTTGGTCATCCTCGAAATTGGCCGGAGACACGGACGGTGC
GCGTTTATTTAAGCCCAAGGAACCCCGCAGAAGCTGTATGATGTTCTGGT
TTAACTCGGCGTAATTCAGTAATTTTTCAATTGCCGACAAACTATGTTTG
GAGGCCATTGGAGAATCGATTTCCTCTTCTAGCATAGCCTTTACCTCACT
GAGCTCCTTGGTGCCGCACTTGTTGATAAGGATGGGCAGTAGGTCCTTAA
TACGTATCAAG
BS17644.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4877-PB | 3354 | CG4877-RB | 2460..3354 | 911..17 | 4475 | 100 | Minus |
| CG4877-PA | 3354 | CG4877-RA | 2460..3354 | 911..17 | 4475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RAF2-RC | 4076 | CG4877-RC | 2709..3604 | 911..16 | 4480 | 100 | Minus |
| RAF2-RA | 4082 | CG4877-RA | 2715..3610 | 911..16 | 4480 | 100 | Minus |
| RAF2-RB | 4006 | CG4877-RB | 2639..3534 | 911..16 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16389933..16390184 | 310..59 | 1260 | 100 | Minus |
| 3L | 28110227 | 3L | 16389404..16389620 | 723..507 | 1085 | 100 | Minus |
| 3L | 28110227 | 3L | 16389677..16389877 | 508..308 | 1005 | 100 | Minus |
| 3L | 28110227 | 3L | 16389160..16389348 | 911..723 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 16390300..16390344 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:47:02 has no hits.
BS17644.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:33 Download gff for
BS17644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4877-PA | 2460..3354 | 17..911 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:01:21 Download gff for
BS17644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 2639..3541 | 11..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:39 Download gff for
BS17644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 2639..3541 | 11..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:39 Download gff for
BS17644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16389405..16389620 | 507..722 | 100 | -> | Minus |
| 3L | 16389679..16389877 | 308..506 | 100 | -> | Minus |
| 3L | 16389936..16390184 | 59..307 | 100 | -> | Minus |
| 3L | 16390302..16390351 | 11..58 | 96 | | Minus |
| 3L | 16389160..16389348 | 723..911 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:01:21 Download gff for
BS17644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16382260..16382448 | 723..911 | 100 | -> | Minus |
| arm_3L | 16382505..16382720 | 507..722 | 100 | -> | Minus |
| arm_3L | 16382779..16382977 | 308..506 | 100 | -> | Minus |
| arm_3L | 16383036..16383284 | 59..307 | 100 | -> | Minus |
| arm_3L | 16383402..16383451 | 11..58 | 96 | | Minus |
BS17644.5prime Sequence
889 bp (820 high quality bases) assembled on 2007-05-29
> BS17644.5prime
GAAGTTATCAGTCGACATGTCCAACGAGATCTACGACTCCTCCAATTCGC
AGCTAAGTAGCGACGAGTATAGCCACGAGGAGGAGGAATACGACGCTCTA
ATGGACGCGGCGGTGAGCAAGCAACGACCCCAAAAGACAAAATCCAAGGG
ATCCGAGTCCGAGAAACCCGGAAATGGAGCTCCAGAATCGGCGGCTGCCA
CTGAGAAAAATGAAAAGCCAGATGACGATGCGGTGCCACCTTCCACGCGC
TCAGAAACAATTCGGCGGATCCGGCAATTGCAGTTACAGCGTGGCAGGCT
GCCCAATCTTTACTTCAAGCGTCGCAGTATTCGTTGGCTGCGACCCAATA
AAATGGACTACAACAGCTATTTTGACGGCCTGAAGGACTTGCTGCCCAAG
CGTAAATTGAAGCACCTGGTTCGCTTCCATGACAGGCAGCGCAGAACCTA
CGACAGCAGGAGCATCAGTCGTAGTCGCAGCCACAGCCGCAGTCTTAGCC
GAAGTTGCAGTCGCAGTCGTAGTCGTAGCTATTCTCGCAGCCGCAGCGGC
AGTGGTTCGCCGGAACTCATTTGCCTTGACGACACGGAGAACGAGGATTC
GCCTGAGAAACCAGAGCAAGAGCCGGCAAGGGTTACGCCCATCAAGGAAA
ATAAGCCTACGCTTCCGGCTCCACCCCAACTAAACTACGAGCTGCCAGAA
AGGAAGAAAGCAAACCCACTTGGAAACAACGAAAACGGTGCCTCTATCCT
CGACGAGTTCCTGGTAAAGAAGGATCCCCAGGAACCGGTCTTCGACTACG
GTAAACTCTCAGCGTGTCGGGAATTGGAACAGGCTCTAAAGGACCGGTCG
CGAGATGCGCCAAATGAGGCAGAGTCGCTTGTGGGTGAT
BS17644.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4877-PB | 3354 | CG4877-RB | 1..868 | 17..884 | 4340 | 100 | Plus |
| CG4877-PA | 3354 | CG4877-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RAF2-RC | 4076 | CG4877-RC | 250..1122 | 17..889 | 4350 | 99.9 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 256..1128 | 17..889 | 4350 | 99.9 | Plus |
| RAF2-RB | 4006 | CG4877-RB | 180..1052 | 17..889 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16387020..16387573 | 336..889 | 2755 | 99.8 | Plus |
| 3L | 28110227 | 3L | 16386637..16386957 | 17..337 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:01:20 has no hits.
BS17644.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:37 Download gff for
BS17644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4877-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:08:48 Download gff for
BS17644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 180..1052 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:55 Download gff for
BS17644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 180..1052 | 17..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:55 Download gff for
BS17644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16386637..16386956 | 17..336 | 100 | -> | Plus |
| 3L | 16387021..16387573 | 337..889 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:08:48 Download gff for
BS17644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16379737..16380056 | 17..336 | 100 | -> | Plus |
| arm_3L | 16380121..16380673 | 337..889 | 99 | | Plus |
BS17644.complete Sequence
3386 bp assembled on 2010-05-06
GenBank Submission: KX802296
> BS17644.complete
GAAGTTATCAGTCGACATGTCCAACGAGATCTACGACTCCTCCAATTCGC
AGCTAAGTAGCGACGAGTATAGCCACGAGGAGGAGGAATACGACGCTCTA
ATGGACGCGGCGGTGAGCAAGCAACGACCCCAAAAGACAAAATCCAAGGG
ATCCGAGTCCGAGAAACCCGGAAATGGAGCTCCAGAATCGGCGGCTGCCA
CTGAGAAAAATGAAAAGCCAGATGACGATGCGGTGCCACCTTCCACGCGC
TCAGAAACAATTCGGCGGATCCGGCAATTGCAGTTACAGCGTGGCAGGCT
GCCCAATCTTTACTTCAAGCGTCGCAGTATTCGTTGGCTGCGACCCAATA
AAATGGACTACAACAGCTATTTTGACGGCCTGAAGGACTTGCTGCCCAAG
CGTAAATTGAAGCACCTGGTTCGCTTCCATGACAGGCAGCGCAGAACCTA
CGACAGCAGGAGCATCAGTCGTAGTCGCAGCCACAGCCGCAGTCTTAGCC
GAAGTTGCAGTCGCAGTCGTAGTCGTAGCTATTCTCGCAGCCGCAGCGGC
AGTGGTTCGCCGGAACTCATTTGCCTTGACGACACGGAGAACGAGGATTC
GCCTGAGAAACCAGAGCAAGAGCCGGCAAGGGTTACGCCCATCAAGGAAA
ATAAGCCTACGCTTCCGGCTCCACCCCAACTAAACTACGAGCTGCCAGAA
AGGAAGAAAGCAAACCCACTTGGAAACAACGAAAACGGTGCCTCTATCCT
CGACGAGTTCCTGGTAAAGAAGGATCCCCAGGAACCGGTCTTCGACTACG
GTAAACTCTCAGCGTGTCGGGAATTGGAACAGGCTCTAAAGGACCGGTCG
CGAGATGCGCCAAATGAGGCAGAGTCGCTTGTGGTTGATGCCACTCTTAA
AAGACGCCGTTCGGTAACACCGCCCGCTAGCGAAGAGAAGCGCAACAATG
AAGTCGAGGATGATAATATAATTGGGTTTTCAACGGTGCAGCAACAGAAG
CCAATGGAGGCAGCTCCACCATTAAATCTAAGAATGCCCACCACTCCATC
GACTAATCCTCTTCAGCGTCAGCAGGCTTTTAAGCTGAGCACACCGTATA
CCCTGGCTCCGCCTACTGCCGCCAAGCAAGCTGACACTTACAGTTTAAAT
ACTCCACCGCCAACGGCCACCCAAATGCAGATATCCTATCCCAACGAAAA
GCTGTCAAATAACATGAAAGCTAATGCGACTTTCTCGATTCAACAGACAG
CTTTATCCCAAGTCGCTGCATCCTATGCTGCTGCACCACAAGTGGCTGCC
CTCGCGCAGAGAGCTCCATCTCAGGTTGCTCCACTACAACAAGCCCCCGT
GCAACAGATGCACTTCCCAAGATCAGTTCCACCGCAGCAGCTTCCTCCAC
CACAGCAGCGAGCTCCTCCACAGCAACTGGCTACAGCTCCATTCGCTCCA
CCACGGCACCTGGCTCAACATAGACCATCTCCACAGCAGCTAGCTCCATC
ACAGCAGCTGGCTCCACCACACCAGCTAGCTCCACCACACCAGCTAGCTC
CACCACAGCAGCGAGCTCCGCCACAGCAGCTAGCTCCACCACACCAGCTA
GCTCCACCACACCAGCTAGCTCCACCACAGCAGCGAGCTCCGCCACAGCA
GCTAGCTCCGCCACAGCAGCTAGCTCCACCACAGCAGCTAGCTCCACCAC
AGCAGCTAGCTCCACCACAGCAGCTAGCTCCACCACAGCAGCGAGCTCCG
CCACAGCAGCGAGCTCCGCCACAGCAGCTGGCTCCGCCACAACAGCGAGC
TCCCACACAGCATATGGCTCCACCACAACATATGGCTCCGCCACAGCAGC
TAGCTCCAACACAGCAGCTAGCTCCTCCACCACAGCAGCTAGCGCCTCGA
CCACAGCAGCTAGCTCCTCCACCACAGCAACTAGCTCCTCCACCACAGCA
GCTAGCTCCTCCACCACAGCAGCCAGATTCATCAAGACCAGCTTCGGTGC
AGCCGTTGACCCCTCAAAGGCATGCTAGTCCACATCAGCTTGCCCAATCA
CAGCAGGTCCATCAATCGCCATCTCAACTGCATCCTGTTCCAGTGGCTGC
TCCCAACTTTGCGGTGCCCCAACAGCCGCAACCCCGTCGATCGGAAACGG
TGAGCACCCAGACGCAGGGCTTGGGGTCACCAGCGGCTTCTTCTTCGACA
ACCCGCCAAAAGTCATTCGTTGATCTCAATAATAGTGATGCAAACTTCCA
TTATCGCGTCAAAGAACTTTTCGATGAATTGAACTCGACAATGATTGATA
AAATTAACTCGGTACCCCCTGATGAAGATTCATTGAAAAAAGAGCGCGAA
CGCATCGTTGCGGATCTTGCAGCCCTAGATAAGCTGATGGCCCAGAAAGA
GGATGAATATAACCGACTGCTGTATTTGAGCTGCATTAAGAAGGAGCTGC
ATGAACGAATGGAGCGAAAGGAGCGCTTGATACGTATTAAGGACCTACTG
CCCATCCTTATCAACAAGTGCGGCACCAAGGAGCTCAGTGAGGTAAAGGC
TATGCTAGAAGAGGAAATCGATTCTCCAATGGCCTCCAAACATAGTTTGT
CGGCAATTGAAAAATTACTGAATTACGCCGAGTTAAACCAGAACATCATA
CAGCTTCTGCGGGGTTCCTTGGGCTTAAATAAACGCGCACCGTCCGTGTC
TCCGGCCAATTTCGAGGATGACCAAATGCTTTTTCGTAGAGATTCCTTGC
CCGTAAGTCATCTATCAATGCGGGATCAGCATTACGAATCTCGGAATGCG
GTAAATGACCATCTGCTAGATAGCAATCCAGACAGAGATCCGCCAGCCAA
GCGACCGAAGCTAATCCACTCGCAAGACAGTAACCAGGACATGGCAAGCT
CCTCGACACATTTGTCAGCCAATCTTTCAGAGACGCTTCGCAAGATTAGG
GCTTGGAAAAATTATTCGCATTTTAGTAACGTCTCAATGGAGGACAATAA
TTCGGATAATGAATCACAGATCGAACCGCTGTTCAACAGCAGTCCGATGG
CCTCCCGTCGCCAACTGGCCAATAGACAGTCCTACCAAGAACAACATTCC
GCTAATATCAACGACCATGAGAATGTCCAAAAGAGGCACAAGTCTCACAA
GCGCAAGTCGCATAAGCACAAGTCTCACAAGCATAGGAGCTCCCATAAGT
CCCAGGCTGAATCTTCCGCCACCATCAACGGTAACACAGGTAGACAATGC
CACGAGTGCAAGCTCTATGGAGCCACCTTTATGTGCTCCAACTGTCAGAA
TCAATGGTACTGCAGTCGTGAATGCCAGCTGAGCGATTGGGACACACATC
ACCGAACTTGTGGCATTTAAAAGCTTTCTAGACCAT
BS17644.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RAF2-RC | 3354 | CG4877-PC | 1..3354 | 17..3370 | 16770 | 100 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1..3354 | 17..3370 | 16770 | 100 | Plus |
| RAF2-RB | 3354 | CG4877-PB | 1..3354 | 17..3370 | 16770 | 100 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1913 | 1517..1971 | 1335 | 87.3 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1913 | 1517..1971 | 1335 | 87.3 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1519..1955 | 1481..1929 | 1230 | 85.8 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1519..1955 | 1481..1929 | 1230 | 85.8 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1894 | 1553..1973 | 1105 | 84.8 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1894 | 1553..1973 | 1105 | 84.8 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1780 | 1571..1886 | 1070 | 89.2 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1780 | 1571..1886 | 1070 | 89.2 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1756 | 1589..1880 | 965 | 88.7 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1756 | 1589..1880 | 965 | 88.7 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1738 | 1607..1880 | 920 | 89.1 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1738 | 1607..1880 | 920 | 89.1 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1720 | 1625..1880 | 815 | 87.9 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1720 | 1625..1880 | 815 | 87.9 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1738 | 1643..1922 | 775 | 86.8 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1720 | 1661..1922 | 775 | 88.2 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1738 | 1643..1922 | 775 | 86.8 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1720 | 1661..1922 | 775 | 88.2 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1738 | 1679..1964 | 705 | 86.4 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1738 | 1679..1964 | 705 | 86.4 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1720 | 1697..1964 | 570 | 84.3 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1720 | 1697..1964 | 570 | 84.3 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1702 | 1715..1964 | 495 | 83.6 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1702 | 1715..1964 | 495 | 83.6 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1684 | 1733..1964 | 360 | 81 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1666 | 1751..1964 | 360 | 82.2 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1684 | 1733..1964 | 360 | 81 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1666 | 1751..1964 | 360 | 82.2 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1630 | 1787..1964 | 255 | 81.5 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1648 | 1769..1964 | 255 | 80.1 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1648 | 1769..1964 | 255 | 80.1 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1630 | 1787..1964 | 255 | 81.5 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1466..1612 | 1806..1964 | 205 | 81.1 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1466..1612 | 1806..1964 | 205 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RAF2-RC | 4076 | CG4877-RC | 250..3604 | 17..3371 | 16775 | 100 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 256..3610 | 17..3371 | 16775 | 100 | Plus |
| RAF2-RB | 4006 | CG4877-RB | 180..3534 | 17..3371 | 16775 | 100 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..2162 | 1517..1971 | 1335 | 87.3 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..2168 | 1517..1971 | 1335 | 87.3 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1768..2204 | 1481..1929 | 1230 | 85.8 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1774..2210 | 1481..1929 | 1230 | 85.8 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..2143 | 1553..1973 | 1105 | 84.8 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..2149 | 1553..1973 | 1105 | 84.8 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..2029 | 1571..1886 | 1070 | 89.2 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..2035 | 1571..1886 | 1070 | 89.2 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..2005 | 1589..1880 | 965 | 88.7 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..2011 | 1589..1880 | 965 | 88.7 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1987 | 1607..1880 | 920 | 89.1 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1993 | 1607..1880 | 920 | 89.1 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1969 | 1625..1880 | 815 | 87.9 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1975 | 1625..1880 | 815 | 87.9 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1987 | 1643..1922 | 775 | 86.8 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1969 | 1661..1922 | 775 | 88.2 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1993 | 1643..1922 | 775 | 86.8 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1975 | 1661..1922 | 775 | 88.2 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1987 | 1679..1964 | 705 | 86.4 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1993 | 1679..1964 | 705 | 86.4 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1969 | 1697..1964 | 570 | 84.3 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1975 | 1697..1964 | 570 | 84.3 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1951 | 1715..1964 | 495 | 83.6 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1957 | 1715..1964 | 495 | 83.6 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1933 | 1733..1964 | 360 | 81 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1915 | 1751..1964 | 360 | 82.2 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1939 | 1733..1964 | 360 | 81 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1921 | 1751..1964 | 360 | 82.2 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1879 | 1787..1964 | 255 | 81.5 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1897 | 1769..1964 | 255 | 80.1 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1885 | 1787..1964 | 255 | 81.5 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1903 | 1769..1964 | 255 | 80.1 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1715..1861 | 1806..1964 | 205 | 81.1 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1721..1867 | 1806..1964 | 205 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16387020..16389348 | 336..2664 | 11645 | 100 | Plus |
| 3L | 28110227 | 3L | 16386637..16386957 | 17..337 | 1605 | 100 | Plus |
| 3L | 28110227 | 3L | 16388165..16388613 | 1517..1971 | 1335 | 87.3 | Plus |
| 3L | 28110227 | 3L | 16389933..16390184 | 3077..3328 | 1260 | 100 | Plus |
| 3L | 28110227 | 3L | 16388219..16388655 | 1481..1929 | 1230 | 85.8 | Plus |
| 3L | 28110227 | 3L | 16388165..16388594 | 1553..1973 | 1105 | 84.8 | Plus |
| 3L | 28110227 | 3L | 16389404..16389620 | 2664..2880 | 1085 | 100 | Plus |
| 3L | 28110227 | 3L | 16388165..16388480 | 1571..1886 | 1070 | 89.2 | Plus |
| 3L | 28110227 | 3L | 16389677..16389877 | 2879..3079 | 1005 | 100 | Plus |
| 3L | 28110227 | 3L | 16388165..16388456 | 1589..1880 | 965 | 88.7 | Plus |
| 3L | 28110227 | 3L | 16388165..16388438 | 1607..1880 | 920 | 89.1 | Plus |
| 3L | 28110227 | 3L | 16388165..16388420 | 1625..1880 | 815 | 87.9 | Plus |
| 3L | 28110227 | 3L | 16388165..16388438 | 1643..1922 | 775 | 86.8 | Plus |
| 3L | 28110227 | 3L | 16388165..16388420 | 1661..1922 | 775 | 88.2 | Plus |
| 3L | 28110227 | 3L | 16388165..16388438 | 1679..1964 | 705 | 86.4 | Plus |
| 3L | 28110227 | 3L | 16388165..16388420 | 1697..1964 | 570 | 84.3 | Plus |
| 3L | 28110227 | 3L | 16388165..16388402 | 1715..1964 | 495 | 83.6 | Plus |
| 3L | 28110227 | 3L | 16388165..16388384 | 1733..1964 | 360 | 81 | Plus |
| 3L | 28110227 | 3L | 16388165..16388366 | 1751..1964 | 360 | 82.2 | Plus |
| 3L | 28110227 | 3L | 16388165..16388348 | 1769..1964 | 255 | 80.1 | Plus |
| 3L | 28110227 | 3L | 16388165..16388330 | 1787..1964 | 255 | 81.5 | Plus |
| 3L | 28110227 | 3L | 16390300..16390344 | 3327..3371 | 225 | 100 | Plus |
| 3L | 28110227 | 3L | 16388166..16388312 | 1806..1964 | 205 | 81.1 | Plus |
Blast to na_te.dros performed 2014-11-27 08:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..7083 | 1574..1977 | 291 | 58.7 | Plus |
BS17644.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-06 09:34:10 Download gff for
BS17644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4877-RA | 238..3589 | 17..3368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:22 Download gff for
BS17644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 180..3531 | 17..3368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:09 Download gff for
BS17644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 180..3531 | 17..3368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:09 Download gff for
BS17644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16389936..16390184 | 3080..3328 | 100 | -> | Plus |
| 3L | 16390302..16390341 | 3329..3368 | 100 | | Plus |
| 3L | 16389679..16389877 | 2881..3079 | 100 | -> | Plus |
| 3L | 16386637..16386956 | 17..336 | 100 | -> | Plus |
| 3L | 16387021..16389348 | 337..2664 | 100 | -> | Plus |
| 3L | 16389405..16389620 | 2665..2880 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:22 Download gff for
BS17644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16379737..16380056 | 17..336 | 100 | -> | Plus |
| arm_3L | 16380121..16382448 | 337..2664 | 100 | -> | Plus |
| arm_3L | 16382505..16382720 | 2665..2880 | 100 | -> | Plus |
| arm_3L | 16382779..16382977 | 2881..3079 | 100 | -> | Plus |
| arm_3L | 16383036..16383284 | 3080..3328 | 100 | -> | Plus |
| arm_3L | 16383402..16383441 | 3329..3368 | 100 | | Plus |
BS17644.pep Sequence
Translation from 16 to 3369
> BS17644.pep
MSNEIYDSSNSQLSSDEYSHEEEEYDALMDAAVSKQRPQKTKSKGSESEK
PGNGAPESAAATEKNEKPDDDAVPPSTRSETIRRIRQLQLQRGRLPNLYF
KRRSIRWLRPNKMDYNSYFDGLKDLLPKRKLKHLVRFHDRQRRTYDSRSI
SRSRSHSRSLSRSCSRSRSRSYSRSRSGSGSPELICLDDTENEDSPEKPE
QEPARVTPIKENKPTLPAPPQLNYELPERKKANPLGNNENGASILDEFLV
KKDPQEPVFDYGKLSACRELEQALKDRSRDAPNEAESLVVDATLKRRRSV
TPPASEEKRNNEVEDDNIIGFSTVQQQKPMEAAPPLNLRMPTTPSTNPLQ
RQQAFKLSTPYTLAPPTAAKQADTYSLNTPPPTATQMQISYPNEKLSNNM
KANATFSIQQTALSQVAASYAAAPQVAALAQRAPSQVAPLQQAPVQQMHF
PRSVPPQQLPPPQQRAPPQQLATAPFAPPRHLAQHRPSPQQLAPSQQLAP
PHQLAPPHQLAPPQQRAPPQQLAPPHQLAPPHQLAPPQQRAPPQQLAPPQ
QLAPPQQLAPPQQLAPPQQLAPPQQRAPPQQRAPPQQLAPPQQRAPTQHM
APPQHMAPPQQLAPTQQLAPPPQQLAPRPQQLAPPPQQLAPPPQQLAPPP
QQPDSSRPASVQPLTPQRHASPHQLAQSQQVHQSPSQLHPVPVAAPNFAV
PQQPQPRRSETVSTQTQGLGSPAASSSTTRQKSFVDLNNSDANFHYRVKE
LFDELNSTMIDKINSVPPDEDSLKKERERIVADLAALDKLMAQKEDEYNR
LLYLSCIKKELHERMERKERLIRIKDLLPILINKCGTKELSEVKAMLEEE
IDSPMASKHSLSAIEKLLNYAELNQNIIQLLRGSLGLNKRAPSVSPANFE
DDQMLFRRDSLPVSHLSMRDQHYESRNAVNDHLLDSNPDRDPPAKRPKLI
HSQDSNQDMASSSTHLSANLSETLRKIRAWKNYSHFSNVSMEDNNSDNES
QIEPLFNSSPMASRRQLANRQSYQEQHSANINDHENVQKRHKSHKRKSHK
HKSHKHRSSHKSQAESSATINGNTGRQCHECKLYGATFMCSNCQNQWYCS
RECQLSDWDTHHRTCGI*
BS17644.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RAF2-PC | 1117 | CG4877-PC | 1..1117 | 1..1117 | 5855 | 100 | Plus |
| RAF2-PA | 1117 | CG4877-PA | 1..1117 | 1..1117 | 5855 | 100 | Plus |
| RAF2-PB | 1117 | CG4877-PB | 1..1117 | 1..1117 | 5855 | 100 | Plus |
| Wnk-PN | 2441 | CG7177-PN | 1027..1443 | 324..711 | 295 | 29.1 | Plus |
| Wnk-PL | 2441 | CG7177-PL | 1027..1443 | 324..711 | 295 | 29.1 | Plus |
| Wnk-PN | 2441 | CG7177-PN | 794..1370 | 244..717 | 258 | 27 | Plus |
