Clone Sequence Records
BS17647.complete Sequence
2585 bp assembled on 2009-12-07
GenBank Submission: KX805860
> BS17647.complete
GAAGTTATCAGTCGACATGGACACGTTGAGCGAGGCAGTGGCCAATGGAA
CCGCGACTGCGGCCACCAGGACGACCAAGGACATTGTCAAGGAGCGCTTC
AAGGAGGACGAGACCATAGAATACATATTCGAGGCGTATCAGATCAAAGG
ACCAGAGTACTCCAACCGTCTTCTGGCCCTGGTTTCATCGCAGTCGGGCG
GCACGTTTGCCATCATCGCGTTCTCCTACTTGCGCACTCCATTGTCCTCC
GCGAACGAGCTGATCATCAACAAGGTGTTCGCAATCGACCACAATTTCCA
GTTGCGACAGGACAGCAAGAGCTCGATCACCACGCAACAGTTTGACCTGT
CCACAGCCGAGGATGGCCCCATCAAGTACTACTACTACGCCACGGAGAGC
CACCACTACGAGGAGTTTGTGGCCAAGGTGATTTCCTTCAAGAGCACCAT
GGCGCAGCATGATCCCGAGACGGTGCTTAACTTCAGGTGGCTGAATGACT
ACCGGCAAATCGGAGAAGTGAAGCAGGAGCTGAAGAAGCGGGAGAGCGAG
TACATTGTCTACAAGGACATAATCATCTACTGCGCCACTTGGAATGTGAA
CAACAAGACCTGCAGCGACAGCAACAATCCACTGCGAGCCTGGCTGGCTT
GCAGTGAGAAGCCGCCGGATATCTACGCGATTGGACTGCAGGAGCTAGAT
ACTCCCACAAAGGCTATGTTGAACTCCACCCAGGTGCAGGCCATCGAGAA
GCAATGGATCGATAAGATGATGGACAGCGTCCACCCTGACGTAGAGTACG
AAATCCTGATGTCGCACCGCCTGGTGGCCACCATGCTGACGGTCATCGTG
CGCAAGCAGCTGCGGCAGCACATCATACGCTGCCGACCAAAGTCGGTGGC
CCGCGGCATCTTCAATACGCTAGGCAACAAGGGCGGTGTCGCCATTAGCC
TGCAGCTCAACGAGGGCAACATCTGCTTTGTGAACTCCCACCTGGCCGCC
CACATGGGCTACGTGGAGGAGCGGAATCAGGACTACAACGCTATCGTGGA
GGGCATACGCTTCGATGATGGCCGAACAATCAGTGACCATGATCACATCT
TCTGGGTCGGCGATTTGAATTACCGCATCCAGGAGCCGCCCGGCCAACAG
CGACCAGGACCACTGAGCGATGCCCAGACATACGAGCTGCTACTGCAGTA
CGACCAGCTACGTCAGGAGATGCGGCGTGGAAAGTGCTTTGAGGGCTACA
CCGAGGGCGAGATCAAGTTCCGGCCGACGTACAAGTATGATCCGGGCACG
GACAACTACGACAGCAGCGAGAAGCAGCGGGCGCCGGCCTACTGCGATCG
AGTGCTCTGGAAGGGCACGCGCATCGAGCAGCTGGCCTACAACAGCATCA
TGGAGATTCGGCAGAGCGATCACAAGCCCGTGTACGCCGTGTTCCAGGTC
AAGGTCAAGACTCGCGATGAGGTCAAGTACAAACGGGTGCAGGAGGAGGT
GCTGAAGGCAGTGGACAAGCGGGAGAACGACAACCAGCCACAGATCAATG
TCGAGAAGACGGTCATCGATTTCGGGACTGTGCGATTTAACGAGCCGAGC
ACACGGGACTTCAACGTCTATAACAACTGCCCACTACCTGTGGACTTCAG
TTTCAAAGAGAAGGATATACACGCCATCTGCGAGCCATGGCTGCACGTCG
ATCCGCGCCAAGACTCGCTGCTGATCGACTCCGCCCGAAGCATTCGGCTG
AAAATGAACGCCAATGTGCGCACCATTGCCGGCTTGCTTCGCAAGATCCG
TGCTAGCGACAACTTCGATATTCTCATCCTGCACGTGGAGAACGGGCGTG
ACATCTTCATCACGGTTACGGGCGACTATCAGCCCAGTTGCTTTGGCCTT
TCCATGGAGACGATGTGCCGCACCGACCGTCCATTAAGCGAGTATTCCCA
AGATCAGATTAAGCAACTCATGAATGACGAATCACCGGAATACCGTGTGA
CGATGCCCCGGGAATTCTTTCTGCTGATCGACTATCTGTACAGGCAGGGC
TCCAAGCAGGTGGGCGCCTTCCCGTCCTACGACTCGCGTCTCTCCCTCGG
CGCTCAATTTAACTCGGTGCGCGATTGGTTGGACACCTGGTCGGATGATC
CGTTCCCTGCCAACGCAGAGACGGCTGCGCAGGCGCTGCTGCTTTTGCTG
GATCTGCCGGAGCATGCTCTGCTGGAGCCGGTGGTCGAGAATCTGCTGGA
GTGCACCAACAAGTCGCAGGCTATGGACTACATTTCGCTGTTAAGTCCCC
CCAAGCGCAATGTTTTCATGCACCTTTGTATGTTCCTGCGCGCGGGCATC
GAGAGTCAGTTCTATGATCTGCATCAAGTCGCATCCACCTTTGGCCGCAT
TCTGTTGCGAAGCACCGAGCGTGCCGCCTGGATGGACTACCACAGCCGAT
GCATACAGTTCATGCGGCTCTTCATCGACACCGACGTCGAGGCAATGGGC
AACGGCAATGAGGGCGCCGGAACTGGAACAGGCTCGGGATCTGGGACCCG
GGCGGGTCTGCAGGCATAGAAGCTTTCTAGACCAT
BS17647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ocrl-RB | 2553 | CG3573-PB | 1..2553 | 17..2569 | 12765 | 100 | Plus |
Ocrl-RA | 2553 | CG3573-PA | 1..2553 | 17..2569 | 12765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ocrl-RB | 3619 | CG3573-RB | 709..3261 | 17..2569 | 12765 | 100 | Plus |
Ocrl-RA | 3688 | CG3573-RA | 778..3330 | 17..2569 | 12765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1925503..1926383 | 1093..1973 | 4390 | 99.9 | Plus |
X | 23542271 | X | 1925103..1925435 | 760..1092 | 1665 | 100 | Plus |
X | 23542271 | X | 1924527..1924789 | 311..573 | 1315 | 100 | Plus |
X | 23542271 | X | 1926694..1926918 | 2157..2381 | 1125 | 100 | Plus |
X | 23542271 | X | 1926978..1927166 | 2381..2569 | 945 | 100 | Plus |
X | 23542271 | X | 1924095..1924285 | 121..311 | 940 | 99.5 | Plus |
X | 23542271 | X | 1926446..1926632 | 1970..2156 | 935 | 100 | Plus |
X | 23542271 | X | 1924851..1925036 | 574..759 | 930 | 100 | Plus |
X | 23542271 | X | 1923758..1923865 | 17..124 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:58:05 has no hits.
BS17647.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:43 Download gff for
BS17647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3573-RA | 754..3306 | 17..2569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:26 Download gff for
BS17647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ocrl-RA | 778..3330 | 17..2569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:57 Download gff for
BS17647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3573-RA | 754..3306 | 17..2569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:49 Download gff for
BS17647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ocrl-RA | 778..3330 | 17..2569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:49 Download gff for
BS17647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1926979..1927166 | 2382..2569 | 100 | | Plus |
X | 1926694..1926918 | 2157..2381 | 100 | -> | Plus |
X | 1923758..1923865 | 17..124 | 100 | -> | Plus |
X | 1924099..1924285 | 125..311 | 100 | -> | Plus |
X | 1924528..1924789 | 312..573 | 100 | -> | Plus |
X | 1924851..1925036 | 574..759 | 100 | -> | Plus |
X | 1925103..1925435 | 760..1092 | 100 | -> | Plus |
X | 1925503..1926379 | 1093..1969 | 100 | -> | Plus |
X | 1926446..1926632 | 1970..2156 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:26 Download gff for
BS17647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1817791..1817898 | 17..124 | 100 | -> | Plus |
arm_X | 1818132..1818318 | 125..311 | 100 | -> | Plus |
arm_X | 1818561..1818822 | 312..573 | 100 | -> | Plus |
arm_X | 1818884..1819069 | 574..759 | 100 | -> | Plus |
arm_X | 1819136..1819468 | 760..1092 | 100 | -> | Plus |
arm_X | 1819536..1820412 | 1093..1969 | 100 | -> | Plus |
arm_X | 1820479..1820665 | 1970..2156 | 100 | -> | Plus |
arm_X | 1820727..1820951 | 2157..2381 | 100 | -> | Plus |
arm_X | 1821012..1821199 | 2382..2569 | 100 | | Plus |
BS17647.3prime Sequence
805 bp (804 high quality bases) assembled on 2007-05-29
> BS17647.3prime
ATGGTCTAGAAAGCTTCTATGCCTGCAGACCCGCCCGGGTCCCAGATCCC
GAGCCTGTTCCAGTTCCGGCGCCCTCATTGCCGTTGCCCATTGCCTCGAC
GTCGGTGTCGATGAAGAGCCGCATGAACTGTATGCATCGGCTGTGGTAGT
CCATCCAGGCGGCACGCTCGGTGCTTCGCAACAGAATGCGGCCAAAGGTG
GATGCGACTTGATGCAGATCATAGAACTGACTCTCGATGCCCGCGCGCAG
GAACATACAAAGGTGCATGAAAACATTGCGCTTGGGGGGACTTAACAGCG
AAATGTAGTCCATAGCCTGCGACTTGTTGGTGCACTCCAGCAGATTCTCG
ACCACCGGCTCCAGCAGAGCATGCTCCGGCAGATCCAGCAAAAGCAGCAG
CGCCTGCGCAGCCGTCTCTGCGTTGGCAGGGAACGGATCATCCGACCAGG
TGTCCAACCAATCGCGCACCGAGTTAAATTGAGCGCCGAGGGAGAGACGC
GAGTCGTAGGACGGGAAGGCGCCCACCTGCTTGGAGCCCTGCCTGTACAG
ATAGTCGATCAGCAGAAAGAATTCCCGGGGCATCGTCACACGGTATTCCG
GTGATTCGTCATTCATGAGTTGCTTAATCTGATCTTGGGAATACTCGCTT
AATGGACGGTCGGTGCGGCACATCGTCTCCATGGAAAGGCCAAAGCAACT
GGGCTGATAGTCGCCCGTAACCGTGATGAAGATGTCACGCCCGTTCTCCA
CGTGCAGGATGAGAATATCGAAGTTGTCGCTAGCACGGATCTTGCGAAGC
AAGCC
BS17647.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3573-PA | 2553 | CG3573-RA | 1765..2553 | 805..17 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ocrl-RB | 3619 | CG3573-RB | 2473..3261 | 805..17 | 3945 | 100 | Minus |
Ocrl-RA | 3688 | CG3573-RA | 2542..3330 | 805..17 | 3945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1926694..1926918 | 429..205 | 1125 | 100 | Minus |
X | 23542271 | X | 1926191..1926383 | 805..613 | 950 | 99.5 | Minus |
X | 23542271 | X | 1926978..1927166 | 205..17 | 945 | 100 | Minus |
X | 23542271 | X | 1926446..1926632 | 616..430 | 935 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 06:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2567..2689 | 328..446 | 110 | 58.1 | Plus |
BS17647.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:51 Download gff for
BS17647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3573-PA | 1765..2553 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:08:52 Download gff for
BS17647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ocrl-RA | 2542..3334 | 13..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:19 Download gff for
BS17647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ocrl-RA | 2542..3334 | 13..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:19 Download gff for
BS17647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1926191..1926379 | 617..805 | 100 | -> | Minus |
X | 1926446..1926632 | 430..616 | 100 | -> | Minus |
X | 1926694..1926918 | 205..429 | 100 | -> | Minus |
X | 1926979..1927170 | 13..204 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:08:52 Download gff for
BS17647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1821012..1821203 | 13..204 | 98 | | Minus |
arm_X | 1820727..1820951 | 205..429 | 100 | -> | Minus |
arm_X | 1820224..1820412 | 617..805 | 100 | -> | Minus |
arm_X | 1820479..1820665 | 430..616 | 100 | -> | Minus |
BS17647.5prime Sequence
918 bp (819 high quality bases) assembled on 2007-05-29
> BS17647.5prime
GAAGTTATCAGTCGACATGGACACGTTGAGCGAGGCAGTGGCCAATGGAA
CCGCGACTGCGGCCACCAGGACGACCAAGGACATTGTCAAGGAGCGCTTC
AAGGAGGACGAGACCATAGAATACATATTCGAGGCGTATCAGATCAAAGG
ACCAGAGTACTCCAACCGTCTTCTGGCCCTGGTTTCATCGCAGTCGGGCG
GCACGTTTGCCATCATCGCGTTCTCCTACTTGCGCACTCCATTGTCCTCC
GCGAACGAGCTGATCATCAACAAGGTGTTCGCAATCGACCACAATTTCCA
GTTGCGACAGGACAGCAAGAGCTCGATCACCACGCAACAGTTTGACCTGT
CCACAGCCGAGGATGGCCCCATCAAGTACTACTACTACGCCACGGAGAGC
CACCACTACGAGGAGTTTGTGGCCAAGGTGATTTCCTTCAAGAGCACCAT
GGCGCAGCATGATCCCGAGACGGTGCTTAACTTCAGGTGGCTGAATGACT
ACCGGCAAATCGGAGAAGTGAAGCAGGAGCTGAAGAAGCGGGAGAGCGAG
TACATTGTCTACAAGGACATAATCATCTACTGCGCCACTTGGAATGTGAA
CAACAAGACCTGCAGCGACAGCAACAATCCACTGCGAGCCTGGCTGGCTT
GCAGTGAGAAGCCGCCGGATATCTACGCGATTGGACTGCAGGAGCTAGAT
ACTCCCACAAAGGCTATGTTGAACTCCACCCAGGTGCAGGCCATCGAGAA
GCAATGGATCGATAAGATGATGGACAGCGTCCACCCTGACGTAGAGTACG
AAATCCTGATGTCGCACCGCCTGGTGGCCACCATGCTGACGGTCATCGTG
CGCAAGCAGCTGCGGCAGCACATCATACGCTGCCGAACAAAGTCGGTGGC
CCGCGGCATCTTCAATAC
BS17647.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3573-PA | 2553 | CG3573-RA | 1..902 | 17..918 | 4485 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ocrl-RB | 3619 | CG3573-RB | 709..1610 | 17..918 | 4495 | 99.9 | Plus |
Ocrl-RA | 3688 | CG3573-RA | 778..1679 | 17..918 | 4495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1924527..1924789 | 311..573 | 1315 | 100 | Plus |
X | 23542271 | X | 1924095..1924285 | 121..311 | 940 | 99.5 | Plus |
X | 23542271 | X | 1924851..1925036 | 574..759 | 930 | 100 | Plus |
X | 23542271 | X | 1925103..1925261 | 760..918 | 780 | 99.4 | Plus |
X | 23542271 | X | 1923758..1923865 | 17..124 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:29:41 has no hits.
BS17647.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:56 Download gff for
BS17647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3573-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:07:32 Download gff for
BS17647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ocrl-RA | 772..1679 | 10..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:43 Download gff for
BS17647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ocrl-RA | 772..1679 | 10..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:43 Download gff for
BS17647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1925103..1925261 | 760..918 | 99 | | Plus |
X | 1923752..1923865 | 10..124 | 97 | -> | Plus |
X | 1924099..1924285 | 125..311 | 100 | -> | Plus |
X | 1924528..1924789 | 312..573 | 100 | -> | Plus |
X | 1924851..1925036 | 574..759 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:07:32 Download gff for
BS17647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1817785..1817898 | 10..124 | 97 | -> | Plus |
arm_X | 1818132..1818318 | 125..311 | 100 | -> | Plus |
arm_X | 1818561..1818822 | 312..573 | 100 | -> | Plus |
arm_X | 1818884..1819069 | 574..759 | 100 | -> | Plus |
arm_X | 1819136..1819294 | 760..918 | 99 | | Plus |
BS17647.pep Sequence
Translation from 16 to 2568
> BS17647.pep
MDTLSEAVANGTATAATRTTKDIVKERFKEDETIEYIFEAYQIKGPEYSN
RLLALVSSQSGGTFAIIAFSYLRTPLSSANELIINKVFAIDHNFQLRQDS
KSSITTQQFDLSTAEDGPIKYYYYATESHHYEEFVAKVISFKSTMAQHDP
ETVLNFRWLNDYRQIGEVKQELKKRESEYIVYKDIIIYCATWNVNNKTCS
DSNNPLRAWLACSEKPPDIYAIGLQELDTPTKAMLNSTQVQAIEKQWIDK
MMDSVHPDVEYEILMSHRLVATMLTVIVRKQLRQHIIRCRPKSVARGIFN
TLGNKGGVAISLQLNEGNICFVNSHLAAHMGYVEERNQDYNAIVEGIRFD
DGRTISDHDHIFWVGDLNYRIQEPPGQQRPGPLSDAQTYELLLQYDQLRQ
EMRRGKCFEGYTEGEIKFRPTYKYDPGTDNYDSSEKQRAPAYCDRVLWKG
TRIEQLAYNSIMEIRQSDHKPVYAVFQVKVKTRDEVKYKRVQEEVLKAVD
KRENDNQPQINVEKTVIDFGTVRFNEPSTRDFNVYNNCPLPVDFSFKEKD
IHAICEPWLHVDPRQDSLLIDSARSIRLKMNANVRTIAGLLRKIRASDNF
DILILHVENGRDIFITVTGDYQPSCFGLSMETMCRTDRPLSEYSQDQIKQ
LMNDESPEYRVTMPREFFLLIDYLYRQGSKQVGAFPSYDSRLSLGAQFNS
VRDWLDTWSDDPFPANAETAAQALLLLLDLPEHALLEPVVENLLECTNKS
QAMDYISLLSPPKRNVFMHLCMFLRAGIESQFYDLHQVASTFGRILLRST
ERAAWMDYHSRCIQFMRLFIDTDVEAMGNGNEGAGTGTGSGSGTRAGLQA
*
BS17647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:13:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ocrl-PB | 850 | CG3573-PB | 1..850 | 1..850 | 4460 | 100 | Plus |
Ocrl-PA | 850 | CG3573-PA | 1..850 | 1..850 | 4460 | 100 | Plus |
Synj-PC | 1218 | CG6562-PC | 521..882 | 168..497 | 487 | 33.4 | Plus |
Synj-PA | 1218 | CG6562-PA | 521..882 | 168..497 | 487 | 33.4 | Plus |
Synj-PB | 1218 | CG6562-PB | 521..882 | 168..497 | 487 | 33.4 | Plus |