Clone BS17647 Report

Search the DGRC for BS17647

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptOcrl-RA
Protein status:BS17647.pep: full length peptide match
Sequenced Size:2585

Clone Sequence Records

BS17647.complete Sequence

2585 bp assembled on 2009-12-07

GenBank Submission: KX805860

> BS17647.complete
GAAGTTATCAGTCGACATGGACACGTTGAGCGAGGCAGTGGCCAATGGAA
CCGCGACTGCGGCCACCAGGACGACCAAGGACATTGTCAAGGAGCGCTTC
AAGGAGGACGAGACCATAGAATACATATTCGAGGCGTATCAGATCAAAGG
ACCAGAGTACTCCAACCGTCTTCTGGCCCTGGTTTCATCGCAGTCGGGCG
GCACGTTTGCCATCATCGCGTTCTCCTACTTGCGCACTCCATTGTCCTCC
GCGAACGAGCTGATCATCAACAAGGTGTTCGCAATCGACCACAATTTCCA
GTTGCGACAGGACAGCAAGAGCTCGATCACCACGCAACAGTTTGACCTGT
CCACAGCCGAGGATGGCCCCATCAAGTACTACTACTACGCCACGGAGAGC
CACCACTACGAGGAGTTTGTGGCCAAGGTGATTTCCTTCAAGAGCACCAT
GGCGCAGCATGATCCCGAGACGGTGCTTAACTTCAGGTGGCTGAATGACT
ACCGGCAAATCGGAGAAGTGAAGCAGGAGCTGAAGAAGCGGGAGAGCGAG
TACATTGTCTACAAGGACATAATCATCTACTGCGCCACTTGGAATGTGAA
CAACAAGACCTGCAGCGACAGCAACAATCCACTGCGAGCCTGGCTGGCTT
GCAGTGAGAAGCCGCCGGATATCTACGCGATTGGACTGCAGGAGCTAGAT
ACTCCCACAAAGGCTATGTTGAACTCCACCCAGGTGCAGGCCATCGAGAA
GCAATGGATCGATAAGATGATGGACAGCGTCCACCCTGACGTAGAGTACG
AAATCCTGATGTCGCACCGCCTGGTGGCCACCATGCTGACGGTCATCGTG
CGCAAGCAGCTGCGGCAGCACATCATACGCTGCCGACCAAAGTCGGTGGC
CCGCGGCATCTTCAATACGCTAGGCAACAAGGGCGGTGTCGCCATTAGCC
TGCAGCTCAACGAGGGCAACATCTGCTTTGTGAACTCCCACCTGGCCGCC
CACATGGGCTACGTGGAGGAGCGGAATCAGGACTACAACGCTATCGTGGA
GGGCATACGCTTCGATGATGGCCGAACAATCAGTGACCATGATCACATCT
TCTGGGTCGGCGATTTGAATTACCGCATCCAGGAGCCGCCCGGCCAACAG
CGACCAGGACCACTGAGCGATGCCCAGACATACGAGCTGCTACTGCAGTA
CGACCAGCTACGTCAGGAGATGCGGCGTGGAAAGTGCTTTGAGGGCTACA
CCGAGGGCGAGATCAAGTTCCGGCCGACGTACAAGTATGATCCGGGCACG
GACAACTACGACAGCAGCGAGAAGCAGCGGGCGCCGGCCTACTGCGATCG
AGTGCTCTGGAAGGGCACGCGCATCGAGCAGCTGGCCTACAACAGCATCA
TGGAGATTCGGCAGAGCGATCACAAGCCCGTGTACGCCGTGTTCCAGGTC
AAGGTCAAGACTCGCGATGAGGTCAAGTACAAACGGGTGCAGGAGGAGGT
GCTGAAGGCAGTGGACAAGCGGGAGAACGACAACCAGCCACAGATCAATG
TCGAGAAGACGGTCATCGATTTCGGGACTGTGCGATTTAACGAGCCGAGC
ACACGGGACTTCAACGTCTATAACAACTGCCCACTACCTGTGGACTTCAG
TTTCAAAGAGAAGGATATACACGCCATCTGCGAGCCATGGCTGCACGTCG
ATCCGCGCCAAGACTCGCTGCTGATCGACTCCGCCCGAAGCATTCGGCTG
AAAATGAACGCCAATGTGCGCACCATTGCCGGCTTGCTTCGCAAGATCCG
TGCTAGCGACAACTTCGATATTCTCATCCTGCACGTGGAGAACGGGCGTG
ACATCTTCATCACGGTTACGGGCGACTATCAGCCCAGTTGCTTTGGCCTT
TCCATGGAGACGATGTGCCGCACCGACCGTCCATTAAGCGAGTATTCCCA
AGATCAGATTAAGCAACTCATGAATGACGAATCACCGGAATACCGTGTGA
CGATGCCCCGGGAATTCTTTCTGCTGATCGACTATCTGTACAGGCAGGGC
TCCAAGCAGGTGGGCGCCTTCCCGTCCTACGACTCGCGTCTCTCCCTCGG
CGCTCAATTTAACTCGGTGCGCGATTGGTTGGACACCTGGTCGGATGATC
CGTTCCCTGCCAACGCAGAGACGGCTGCGCAGGCGCTGCTGCTTTTGCTG
GATCTGCCGGAGCATGCTCTGCTGGAGCCGGTGGTCGAGAATCTGCTGGA
GTGCACCAACAAGTCGCAGGCTATGGACTACATTTCGCTGTTAAGTCCCC
CCAAGCGCAATGTTTTCATGCACCTTTGTATGTTCCTGCGCGCGGGCATC
GAGAGTCAGTTCTATGATCTGCATCAAGTCGCATCCACCTTTGGCCGCAT
TCTGTTGCGAAGCACCGAGCGTGCCGCCTGGATGGACTACCACAGCCGAT
GCATACAGTTCATGCGGCTCTTCATCGACACCGACGTCGAGGCAATGGGC
AACGGCAATGAGGGCGCCGGAACTGGAACAGGCTCGGGATCTGGGACCCG
GGCGGGTCTGCAGGCATAGAAGCTTTCTAGACCAT

BS17647.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Ocrl-RB 2553 CG3573-PB 1..2553 17..2569 12765 100 Plus
Ocrl-RA 2553 CG3573-PA 1..2553 17..2569 12765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ocrl-RB 3619 CG3573-RB 709..3261 17..2569 12765 100 Plus
Ocrl-RA 3688 CG3573-RA 778..3330 17..2569 12765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1925503..1926383 1093..1973 4390 99.9 Plus
X 23542271 X 1925103..1925435 760..1092 1665 100 Plus
X 23542271 X 1924527..1924789 311..573 1315 100 Plus
X 23542271 X 1926694..1926918 2157..2381 1125 100 Plus
X 23542271 X 1926978..1927166 2381..2569 945 100 Plus
X 23542271 X 1924095..1924285 121..311 940 99.5 Plus
X 23542271 X 1926446..1926632 1970..2156 935 100 Plus
X 23542271 X 1924851..1925036 574..759 930 100 Plus
X 23542271 X 1923758..1923865 17..124 540 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:58:05 has no hits.

BS17647.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:43 Download gff for BS17647.complete
Subject Subject Range Query Range Percent Splice Strand
CG3573-RA 754..3306 17..2569 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:26 Download gff for BS17647.complete
Subject Subject Range Query Range Percent Splice Strand
Ocrl-RA 778..3330 17..2569 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:57 Download gff for BS17647.complete
Subject Subject Range Query Range Percent Splice Strand
CG3573-RA 754..3306 17..2569 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:49 Download gff for BS17647.complete
Subject Subject Range Query Range Percent Splice Strand
Ocrl-RA 778..3330 17..2569 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:49 Download gff for BS17647.complete
Subject Subject Range Query Range Percent Splice Strand
X 1926979..1927166 2382..2569 100   Plus
X 1926694..1926918 2157..2381 100 -> Plus
X 1923758..1923865 17..124 100 -> Plus
X 1924099..1924285 125..311 100 -> Plus
X 1924528..1924789 312..573 100 -> Plus
X 1924851..1925036 574..759 100 -> Plus
X 1925103..1925435 760..1092 100 -> Plus
X 1925503..1926379 1093..1969 100 -> Plus
X 1926446..1926632 1970..2156 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:26 Download gff for BS17647.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1817791..1817898 17..124 100 -> Plus
arm_X 1818132..1818318 125..311 100 -> Plus
arm_X 1818561..1818822 312..573 100 -> Plus
arm_X 1818884..1819069 574..759 100 -> Plus
arm_X 1819136..1819468 760..1092 100 -> Plus
arm_X 1819536..1820412 1093..1969 100 -> Plus
arm_X 1820479..1820665 1970..2156 100 -> Plus
arm_X 1820727..1820951 2157..2381 100 -> Plus
arm_X 1821012..1821199 2382..2569 100   Plus

BS17647.3prime Sequence

805 bp (804 high quality bases) assembled on 2007-05-29

> BS17647.3prime
ATGGTCTAGAAAGCTTCTATGCCTGCAGACCCGCCCGGGTCCCAGATCCC
GAGCCTGTTCCAGTTCCGGCGCCCTCATTGCCGTTGCCCATTGCCTCGAC
GTCGGTGTCGATGAAGAGCCGCATGAACTGTATGCATCGGCTGTGGTAGT
CCATCCAGGCGGCACGCTCGGTGCTTCGCAACAGAATGCGGCCAAAGGTG
GATGCGACTTGATGCAGATCATAGAACTGACTCTCGATGCCCGCGCGCAG
GAACATACAAAGGTGCATGAAAACATTGCGCTTGGGGGGACTTAACAGCG
AAATGTAGTCCATAGCCTGCGACTTGTTGGTGCACTCCAGCAGATTCTCG
ACCACCGGCTCCAGCAGAGCATGCTCCGGCAGATCCAGCAAAAGCAGCAG
CGCCTGCGCAGCCGTCTCTGCGTTGGCAGGGAACGGATCATCCGACCAGG
TGTCCAACCAATCGCGCACCGAGTTAAATTGAGCGCCGAGGGAGAGACGC
GAGTCGTAGGACGGGAAGGCGCCCACCTGCTTGGAGCCCTGCCTGTACAG
ATAGTCGATCAGCAGAAAGAATTCCCGGGGCATCGTCACACGGTATTCCG
GTGATTCGTCATTCATGAGTTGCTTAATCTGATCTTGGGAATACTCGCTT
AATGGACGGTCGGTGCGGCACATCGTCTCCATGGAAAGGCCAAAGCAACT
GGGCTGATAGTCGCCCGTAACCGTGATGAAGATGTCACGCCCGTTCTCCA
CGTGCAGGATGAGAATATCGAAGTTGTCGCTAGCACGGATCTTGCGAAGC
AAGCC

BS17647.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3573-PA 2553 CG3573-RA 1765..2553 805..17 3945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ocrl-RB 3619 CG3573-RB 2473..3261 805..17 3945 100 Minus
Ocrl-RA 3688 CG3573-RA 2542..3330 805..17 3945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1926694..1926918 429..205 1125 100 Minus
X 23542271 X 1926191..1926383 805..613 950 99.5 Minus
X 23542271 X 1926978..1927166 205..17 945 100 Minus
X 23542271 X 1926446..1926632 616..430 935 100 Minus
Blast to na_te.dros performed 2015-02-13 06:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2567..2689 328..446 110 58.1 Plus

BS17647.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:51 Download gff for BS17647.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3573-PA 1765..2553 17..805 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:08:52 Download gff for BS17647.3prime
Subject Subject Range Query Range Percent Splice Strand
Ocrl-RA 2542..3334 13..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:19 Download gff for BS17647.3prime
Subject Subject Range Query Range Percent Splice Strand
Ocrl-RA 2542..3334 13..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:19 Download gff for BS17647.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1926191..1926379 617..805 100 -> Minus
X 1926446..1926632 430..616 100 -> Minus
X 1926694..1926918 205..429 100 -> Minus
X 1926979..1927170 13..204 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:08:52 Download gff for BS17647.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1821012..1821203 13..204 98   Minus
arm_X 1820727..1820951 205..429 100 -> Minus
arm_X 1820224..1820412 617..805 100 -> Minus
arm_X 1820479..1820665 430..616 100 -> Minus

BS17647.5prime Sequence

918 bp (819 high quality bases) assembled on 2007-05-29

> BS17647.5prime
GAAGTTATCAGTCGACATGGACACGTTGAGCGAGGCAGTGGCCAATGGAA
CCGCGACTGCGGCCACCAGGACGACCAAGGACATTGTCAAGGAGCGCTTC
AAGGAGGACGAGACCATAGAATACATATTCGAGGCGTATCAGATCAAAGG
ACCAGAGTACTCCAACCGTCTTCTGGCCCTGGTTTCATCGCAGTCGGGCG
GCACGTTTGCCATCATCGCGTTCTCCTACTTGCGCACTCCATTGTCCTCC
GCGAACGAGCTGATCATCAACAAGGTGTTCGCAATCGACCACAATTTCCA
GTTGCGACAGGACAGCAAGAGCTCGATCACCACGCAACAGTTTGACCTGT
CCACAGCCGAGGATGGCCCCATCAAGTACTACTACTACGCCACGGAGAGC
CACCACTACGAGGAGTTTGTGGCCAAGGTGATTTCCTTCAAGAGCACCAT
GGCGCAGCATGATCCCGAGACGGTGCTTAACTTCAGGTGGCTGAATGACT
ACCGGCAAATCGGAGAAGTGAAGCAGGAGCTGAAGAAGCGGGAGAGCGAG
TACATTGTCTACAAGGACATAATCATCTACTGCGCCACTTGGAATGTGAA
CAACAAGACCTGCAGCGACAGCAACAATCCACTGCGAGCCTGGCTGGCTT
GCAGTGAGAAGCCGCCGGATATCTACGCGATTGGACTGCAGGAGCTAGAT
ACTCCCACAAAGGCTATGTTGAACTCCACCCAGGTGCAGGCCATCGAGAA
GCAATGGATCGATAAGATGATGGACAGCGTCCACCCTGACGTAGAGTACG
AAATCCTGATGTCGCACCGCCTGGTGGCCACCATGCTGACGGTCATCGTG
CGCAAGCAGCTGCGGCAGCACATCATACGCTGCCGAACAAAGTCGGTGGC
CCGCGGCATCTTCAATAC

BS17647.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3573-PA 2553 CG3573-RA 1..902 17..918 4485 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Ocrl-RB 3619 CG3573-RB 709..1610 17..918 4495 99.9 Plus
Ocrl-RA 3688 CG3573-RA 778..1679 17..918 4495 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1924527..1924789 311..573 1315 100 Plus
X 23542271 X 1924095..1924285 121..311 940 99.5 Plus
X 23542271 X 1924851..1925036 574..759 930 100 Plus
X 23542271 X 1925103..1925261 760..918 780 99.4 Plus
X 23542271 X 1923758..1923865 17..124 540 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:29:41 has no hits.

BS17647.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:56 Download gff for BS17647.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3573-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:07:32 Download gff for BS17647.5prime
Subject Subject Range Query Range Percent Splice Strand
Ocrl-RA 772..1679 10..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:43 Download gff for BS17647.5prime
Subject Subject Range Query Range Percent Splice Strand
Ocrl-RA 772..1679 10..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:43 Download gff for BS17647.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1925103..1925261 760..918 99   Plus
X 1923752..1923865 10..124 97 -> Plus
X 1924099..1924285 125..311 100 -> Plus
X 1924528..1924789 312..573 100 -> Plus
X 1924851..1925036 574..759 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:07:32 Download gff for BS17647.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1817785..1817898 10..124 97 -> Plus
arm_X 1818132..1818318 125..311 100 -> Plus
arm_X 1818561..1818822 312..573 100 -> Plus
arm_X 1818884..1819069 574..759 100 -> Plus
arm_X 1819136..1819294 760..918 99   Plus

BS17647.pep Sequence

Translation from 16 to 2568

> BS17647.pep
MDTLSEAVANGTATAATRTTKDIVKERFKEDETIEYIFEAYQIKGPEYSN
RLLALVSSQSGGTFAIIAFSYLRTPLSSANELIINKVFAIDHNFQLRQDS
KSSITTQQFDLSTAEDGPIKYYYYATESHHYEEFVAKVISFKSTMAQHDP
ETVLNFRWLNDYRQIGEVKQELKKRESEYIVYKDIIIYCATWNVNNKTCS
DSNNPLRAWLACSEKPPDIYAIGLQELDTPTKAMLNSTQVQAIEKQWIDK
MMDSVHPDVEYEILMSHRLVATMLTVIVRKQLRQHIIRCRPKSVARGIFN
TLGNKGGVAISLQLNEGNICFVNSHLAAHMGYVEERNQDYNAIVEGIRFD
DGRTISDHDHIFWVGDLNYRIQEPPGQQRPGPLSDAQTYELLLQYDQLRQ
EMRRGKCFEGYTEGEIKFRPTYKYDPGTDNYDSSEKQRAPAYCDRVLWKG
TRIEQLAYNSIMEIRQSDHKPVYAVFQVKVKTRDEVKYKRVQEEVLKAVD
KRENDNQPQINVEKTVIDFGTVRFNEPSTRDFNVYNNCPLPVDFSFKEKD
IHAICEPWLHVDPRQDSLLIDSARSIRLKMNANVRTIAGLLRKIRASDNF
DILILHVENGRDIFITVTGDYQPSCFGLSMETMCRTDRPLSEYSQDQIKQ
LMNDESPEYRVTMPREFFLLIDYLYRQGSKQVGAFPSYDSRLSLGAQFNS
VRDWLDTWSDDPFPANAETAAQALLLLLDLPEHALLEPVVENLLECTNKS
QAMDYISLLSPPKRNVFMHLCMFLRAGIESQFYDLHQVASTFGRILLRST
ERAAWMDYHSRCIQFMRLFIDTDVEAMGNGNEGAGTGTGSGSGTRAGLQA
*

BS17647.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Ocrl-PB 850 CG3573-PB 1..850 1..850 4460 100 Plus
Ocrl-PA 850 CG3573-PA 1..850 1..850 4460 100 Plus
Synj-PC 1218 CG6562-PC 521..882 168..497 487 33.4 Plus
Synj-PA 1218 CG6562-PA 521..882 168..497 487 33.4 Plus
Synj-PB 1218 CG6562-PB 521..882 168..497 487 33.4 Plus