Clone BS17648 Report

Search the DGRC for BS17648

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptPitslre-RA
Protein status:BS17648.pep: full length peptide match
Sequenced Size:2891

Clone Sequence Records

BS17648.complete Sequence

2891 bp assembled on 2009-12-07

GenBank Submission: KX802158

> BS17648.complete
GAAGTTATCAGTCGACATGGTCAATTCGTCTGGCAGCGAGGATGGCCAGT
TGCGGAGCCCCAACGATGTGCACTATCACAGCCGAGGCGAGGAGGATGAG
CACGAGGGCGACGCTGATGCCTTGTACATTCAACCACCGCAGGCCAGCCG
AGAATCAGGATCCGGTCCCAGGCGCGAGAAGAAGAAACATTCCCGCGAGC
GTCGACGCCACAAGGAGCGTGATGACGTAGGCGGTGCTGCACTAGCACTA
GAACGGGATCATCGATATGACTATCGGAGCCGGGAGGAGCACTACCACCA
CCACCAACGCGAACGGAGCAGCAATGCGGCTGCAGCCTATGCGAAACACC
ACCTGGGCCATGCCTACCATTACCCTCAGCCGCCTCAACAGCAGCAACAG
CCTCTACCGCCGGCGCCCAGCTATGCTGCCCACCATTATCATCATCACCA
GCATTTAAGTGGAGCTCGAGCTGCTCCCCGCGAATACCATTCCTATCCAT
CGGGCTACCATTCGGGCAGTCGACACGGCGACTACCCAATGGAGGAGCCA
ACGCGACGCAGCAGTAAGTACGCGGAGAGCAAGGATGCTGAGAGCCTGGA
ACAGGATCTGCGATCGAGGTTGCTGAAAAAGCGCCATAACTACGTTAAGG
ATTATGAAACGGAGGAGAACTATGAGCATCGGGTCGAGAGAAGTGATCGC
CGGGAGGGAGGACGCAAAGAGCGGGAGAGAACTGTGCGAAGTACCCACAA
GCAAAACCGTCACGACCGAGTCATTGAGCTGCTGGACAGTCCTGAGCAGG
AGCACCACCATCAGCACCAGCACAAATCGCATCGCAGCAAGTGGCGCGAG
GAGGTTGAGGTTATCAGACGAAAGGTGCCCGAGGACTTGGAGCTGTTGGC
TCGCAGGGAAAAACTTCTTGCCGCTGAACGGGAAAGCCGCCAGCGAAAAC
AGACGGCTCGTGAGGAACTGGAAGCTCGGCGGGAGTTGCTCCGCGAGCGA
AACGAGCACAGTGATGCACTTAGTCCAACAACAGTGGCTGCAAGTGTAAC
CGCAGGTCTGAACATTCATGTGAAGAGGAAGTCCAAGCCGGATAACTATG
AGAAGGAAATCAAACTCAAGAAGCGGCGGGAAGATGATATCGAGGTTATC
CGAGATGATGACGATGAGGAAAGCGAGGAGAGCGACTCAAACGAGGAGGT
TCCTGAGCAAGACAGCGAAGGAAGCGCAACAGAGTCTGGAAGCGAAGACA
GCTATGCTAGCAAAAAGAAGAGCAAGATTAAATCCAAGTCTCAATTGGAA
GACGATGACGAGGATTTACCCTTACCCGACAGTCCACTTAGCGTGGGTGA
GCTATACAAGTCGCCCAAGCAACGTCAGCGATCTCGCTCTGTAAGCTCCA
AGAGCAGCTCCCAGTCCAGTCGAAGCAGTCGGTCCAGATCCCGTTCTAGA
AGTCAAAGCAGCCTAGAGGATGAGGTAGATCGTCAAGACGTGGGGGCAGA
TGCCTCACCCAGCAGCAGCACACGCAGCGAGGAACGTGGAATGACCCAAG
AGCAGCCGGAAGAGAAGCCCGAGGAGAAACTCAAAGAGAAACAGAAGTCT
CTGGAGGAGCAAATTCCGTGCGATGACAAGGGCATTCCCCTGCCCAACTA
TTATCCCGGTGTGCAGGGCTGCCGGTCTGTGGAGGAATTCCAGTGTCTAA
ACCGCATCGAAGAGGGAACCTATGGAGTGGTATATCGAGCCAAGGACAAA
AGAACCAATGAGATTGTGGCTCTTAAGCGTCTGAAAATGGAGAAGGAAAA
GGAGGGATTTCCGATAACATCACTCAGGGAGATCAACACTCTTCTCAAGG
GTCAGCACCCGAATATTGTGACCGTTCGCGAGATCGTGGTCGGATCCAAC
ATGGATAAGATATTTATTGTGATGGACTATGTAGAACACGACCTGAAATC
CCTGATGGAAACGATGAAAAATCGTAAGCAGAGCTTTTTCCCCGGAGAAG
TCAAATGTCTGACGCAGCAGCTTCTGCGGGCGGTGGCCCACCTCCATGAC
AATTGGATATTGCATCGTGACCTGAAGACCTCCAATCTCCTCTTGTCCCA
CAAGGGCATTCTCAAGGTGGGTGATTTCGGATTGGCAAGGGAGTATGGAT
CGCCGATCAAGAAGTATACCTCACTTGTTGTCACTCTCTGGTATCGTGCA
CCCGAGCTCCTTCTCTGCTCGCCGGTTTACTCCACGCCCATAGACGTCTG
GTCGGTAGGCTGCATTTTCGCCGAATTCTTGCAGATGCTGCCGCTCTTTC
CGGGAAAATCTGAAATCGATGAGCTTAACAGGATCTTTAAGGAATTGGGA
ACTCCGAACGAGAAGATCTGGCCAGGATACACCGAGCTCCCAGCCGTGAA
GAACATGTTGTCGCAGAACTCTCAGTTTACCGAGTATCCCGTCTCGCAAC
TGCGCAAGCACTTCCAGGAGAAGACCTCTGAAATGGGCTTGTCGCTGCTG
CAGGGTCTGCTGACGTACGATCCGAAACAAAGACTGAGCGCCGACGCGGC
ACTAAAGCACGGCTTCTTCAAGGAGCTGCCATTGCCCATCGATCCATCCA
TGTTTCCCACCTGGCCGGCCAAGAGCGAGTTGGGAGCCCGCAAGGCGCAA
GCCTCTTCCCCCAAACCGCCATCCGGTGGCTCGCAGTTCAAGCAACTAGG
CCGCGACGAGCCCATCATCGTGGGACCGGGAAACAAGCTCTCATCTGGGA
TTATCACTGGCAACAAGAAGAGCCACGGAGCTGGTGGATCGTCGGCTAGC
ACGGGATTTGTCCTGAACGCTGGAATAACGCAGCGCCAGTTGGCCATGGG
ACCGGGATTCAGTCTGAAGTTCTGAAAGCTTTCTAGACCAT

BS17648.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Pitslre-RC 2859 CG4268-PC 1..2859 17..2875 14295 100 Plus
Pitslre-RA 2859 CG4268-PA 1..2859 17..2875 14295 100 Plus
Pitslre-RG 2337 CG4268-PG 1..2337 539..2875 11685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Pitslre-RC 3296 CG4268-RC 214..3072 17..2875 14295 100 Plus
Pitslre-RA 3355 CG4268-RA 273..3131 17..2875 14295 100 Plus
Pitslre-RG 3939 CG4268-RG 1014..3809 80..2875 13980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20773792..20776054 80..2342 11315 100 Plus
3L 28110227 3L 20776172..20776707 2340..2875 2680 100 Plus
3L 28110227 3L 20771800..20771864 17..81 325 100 Plus
Blast to na_te.dros performed 2014-11-28 01:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6804 371..453 124 65.1 Plus

BS17648.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:11 Download gff for BS17648.complete
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RC 176..3033 17..2874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:23 Download gff for BS17648.complete
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RA 273..3130 17..2874 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:15 Download gff for BS17648.complete
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RC 176..3033 17..2874 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:53 Download gff for BS17648.complete
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RA 273..3130 17..2874 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:53 Download gff for BS17648.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20771800..20771864 17..81 100 -> Plus
3L 20773794..20776053 82..2341 100 -> Plus
3L 20776174..20776706 2342..2874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:23 Download gff for BS17648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20764900..20764964 17..81 100 -> Plus
arm_3L 20766894..20769153 82..2341 100 -> Plus
arm_3L 20769274..20769806 2342..2874 100   Plus

BS17648.3prime Sequence

902 bp (678 high quality bases) assembled on 2007-05-29

> BS17648.3prime
ATGGTCTAGAAAGCTTTCAGAACTTCAGACTGAATCCCGGTCCCATGGCC
AACTGGCGCTGCGTTATTCCAGCGTTCAGGACAAATCCCGTGCTAGCCGA
CGATCCACCAGCTCCGTGGCTCTTCTTGTTGCCAGTGATAATCCCAGATG
AGAGCTTGTTTCCCGGTCCCACGATGATGGGCTCGTCGCGGCCTAGTTGC
TTGAACTGCGAGCCACCGGATGGCGGTTTGGGGGAAGAGGCTTGCGCCTT
GCGGGCTCCCAACTCGCTCTTGGCCGGCCAGGTGGGAAACATGGATGGAT
CGATGGGCAATGGCAGCTCCTTGAAGAAGCCGTGCTTTAGTGCCGCGTCG
GCGCTCAGTCTTTGTTTCGGATCGTACGTCAGCAGACCCTGCAGCAGCGA
CAAGCCCATTTCAGAGGTCTTCTCCTGGAAGTGCTTGCGCAGTTGCGAGA
CGGGATACTCGGTAAACTGAGAGTTCTGCGACAACATGTTCTTCACGGCT
GGGAGCTCGGTGTATCCTGGCCAGATCTTCTCGTTCGGAGTTCCCAATTC
CTTAAAGATCCTGTTAAGCTCATCGATTTCAGATTTTCCCGGAAAGAGCG
GCAGCATCTGCAAGAATTCGGCGAAAATGCAGCCTACCGACCAGACGTCT
ATGGGCGTGGAGTAAACCGGCGAGCAGAGAAGGAGCTCGGGTGCACGATA
CCAGAGAGTGACAACAAGTGAGGTATACTTCTTGATCGGCGATCCATACT
CCCTTGCCAATCCGAAATCACCCACCTTGAGAATGCCCTTGTGGGACAAG
AGGAGATTGNAGGTCTTCAGGTCACGATGCAATATCCAATTGTCATGGAG
GTGGGCCACCGCCCGCAGAAGCTGCTGCGTCAGACATTTGACTTCTCCGG
GG

BS17648.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4268-PA 2859 Pitslre-RA 1974..2859 902..17 4411 99.8 Minus
CG4268-PC 2859 Pitslre-RC 1974..2859 902..17 4411 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
Pitslre-RG 3939 CG4268-RG 2924..3809 902..17 4419 99.9 Minus
Pitslre-RF 3620 CG4268-RF 2605..3490 902..17 4419 99.9 Minus
Pitslre-RE 4391 CG4268-RE 3376..4261 902..17 4419 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20776172..20776707 552..17 2680 100 Minus
3L 28110227 3L 20775702..20776054 902..550 1754 99.7 Minus
Blast to na_te.dros performed on 2015-02-13 15:42:30 has no hits.

BS17648.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:01 Download gff for BS17648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4268-PC 1974..2859 17..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:30 Download gff for BS17648.3prime
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RE 3376..4265 12..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:12:06 Download gff for BS17648.3prime
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RE 3376..4265 12..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:12:06 Download gff for BS17648.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20775702..20776053 551..902 99 -> Minus
3L 20776174..20776711 12..550 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:30 Download gff for BS17648.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20768802..20769153 551..902 99 -> Minus
arm_3L 20769274..20769811 12..550 99   Minus

BS17648.5prime Sequence

835 bp (744 high quality bases) assembled on 2007-05-29

> BS17648.5prime
GAAGTTATCAGTCGACATGGTCAATTCGTCTGGCAGCGAGGATGGCCAGT
TGCGGAGCCCCAACGATGTGCACTATCACAGCCGAGGCGAGGAGGATGAG
CACGAGGGCGACGCTGATGCCTTGTACATTCAACCACCGCAGGCCAGCCG
AGAATCAGGATCCGGTCCCAGGCGCGAGAAGAAGAAACATTCCCGCGAGC
GTCGACGCCACAAGGAGCGTGATGACGTAGGCGGTGCTGCACTAGCACTA
GAACGGGATCATCGATATGACTATCGGAGCCGGGAGGAGCACTACCACCA
CCACCAACGCGAACGGAGCAGCAATGCGGCTGCAGCCTATGCGAAACACC
ACCTGGGCCATGCCTACCATTACCCTCAGCCGCCTCAACAGCAGCAACAG
CCTCTACCGCCGGCGCCCAGCTATGCTGCCCACCATTATCATCATCACCA
GCATTTAAGTGGAGCTCGAGCTGCTCCCCGCGAATACCATTCCTATCCAT
CGGGCTACCATTCGGGCAGTCGACACGGCGACTACCCAATGGAGGAGCCA
ACGCGACGCAGCAGTAAGTACGCGGAGAGCAAGGATGCTGAGAGCCTGGA
ACAGGATCTGCGATCGAGGTTGCTGAAAAAGCGCCATAACTACGTTAAGG
ATTATGAAACGGAGGAGAACTATGAGCATCGGGTCGAGAGAAGTGATCGC
CGGGAGGGAGGACGCAAAGAGCGGGAGAGAACTGTGCGAAGTACCCACAA
GCAAAACCGTCACGACCGAGTCATTGAGCTGCTGGACAGTCCTGAGCAGG
AGCACCACCATCAGCACCAGCACAAATCGCATCGC

BS17648.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4268-PA 2859 Pitslre-RA 1..819 17..835 4095 100 Plus
CG4268-PC 2859 Pitslre-RC 1..819 17..835 4095 100 Plus
CG4268-PD 225 Pitslre-RD 1..65 17..81 325 100 Plus
CG4268-PB 225 Pitslre-RB 1..65 17..81 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pitslre-RC 3296 CG4268-RC 214..1032 17..835 4095 100 Plus
Pitslre-RA 3355 CG4268-RA 273..1091 17..835 4095 100 Plus
Pitslre-RG 3939 CG4268-RG 1014..1769 80..835 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20773792..20774547 80..835 3780 100 Plus
3L 28110227 3L 20771800..20771864 17..81 325 100 Plus
Blast to na_te.dros performed 2015-02-12 10:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6804 371..453 124 65.1 Plus
roo 9092 roo DM_ROO 9092bp 1104..1139 366..401 108 77.8 Plus

BS17648.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:05 Download gff for BS17648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4268-PC 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:52:44 Download gff for BS17648.5prime
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RA 273..1091 17..835 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:32 Download gff for BS17648.5prime
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RA 273..1091 17..835 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:32 Download gff for BS17648.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20771800..20771864 17..81 100 -> Plus
3L 20773794..20774547 82..835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:52:44 Download gff for BS17648.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20764900..20764964 17..81 100 -> Plus
arm_3L 20766894..20767647 82..835 100   Plus

BS17648.pep Sequence

Translation from 16 to 2874

> BS17648.pep
MVNSSGSEDGQLRSPNDVHYHSRGEEDEHEGDADALYIQPPQASRESGSG
PRREKKKHSRERRRHKERDDVGGAALALERDHRYDYRSREEHYHHHQRER
SSNAAAAYAKHHLGHAYHYPQPPQQQQQPLPPAPSYAAHHYHHHQHLSGA
RAAPREYHSYPSGYHSGSRHGDYPMEEPTRRSSKYAESKDAESLEQDLRS
RLLKKRHNYVKDYETEENYEHRVERSDRREGGRKERERTVRSTHKQNRHD
RVIELLDSPEQEHHHQHQHKSHRSKWREEVEVIRRKVPEDLELLARREKL
LAAERESRQRKQTAREELEARRELLRERNEHSDALSPTTVAASVTAGLNI
HVKRKSKPDNYEKEIKLKKRREDDIEVIRDDDDEESEESDSNEEVPEQDS
EGSATESGSEDSYASKKKSKIKSKSQLEDDDEDLPLPDSPLSVGELYKSP
KQRQRSRSVSSKSSSQSSRSSRSRSRSRSQSSLEDEVDRQDVGADASPSS
STRSEERGMTQEQPEEKPEEKLKEKQKSLEEQIPCDDKGIPLPNYYPGVQ
GCRSVEEFQCLNRIEEGTYGVVYRAKDKRTNEIVALKRLKMEKEKEGFPI
TSLREINTLLKGQHPNIVTVREIVVGSNMDKIFIVMDYVEHDLKSLMETM
KNRKQSFFPGEVKCLTQQLLRAVAHLHDNWILHRDLKTSNLLLSHKGILK
VGDFGLAREYGSPIKKYTSLVVTLWYRAPELLLCSPVYSTPIDVWSVGCI
FAEFLQMLPLFPGKSEIDELNRIFKELGTPNEKIWPGYTELPAVKNMLSQ
NSQFTEYPVSQLRKHFQEKTSEMGLSLLQGLLTYDPKQRLSADAALKHGF
FKELPLPIDPSMFPTWPAKSELGARKAQASSPKPPSGGSQFKQLGRDEPI
IVGPGNKLSSGIITGNKKSHGAGGSSASTGFVLNAGITQRQLAMGPGFSL
KF*

BS17648.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pitslre-PC 952 CG4268-PC 1..952 1..952 4974 100 Plus
Pitslre-PA 952 CG4268-PA 1..952 1..952 4974 100 Plus
Pitslre-PG 778 CG4268-PG 1..778 175..952 4000 100 Plus
Pitslre-PF 778 CG4268-PF 1..778 175..952 4000 100 Plus
Pitslre-PE 778 CG4268-PE 1..778 175..952 4000 100 Plus