Clone Sequence Records
BS17648.complete Sequence
2891 bp assembled on 2009-12-07
GenBank Submission: KX802158
> BS17648.complete
GAAGTTATCAGTCGACATGGTCAATTCGTCTGGCAGCGAGGATGGCCAGT
TGCGGAGCCCCAACGATGTGCACTATCACAGCCGAGGCGAGGAGGATGAG
CACGAGGGCGACGCTGATGCCTTGTACATTCAACCACCGCAGGCCAGCCG
AGAATCAGGATCCGGTCCCAGGCGCGAGAAGAAGAAACATTCCCGCGAGC
GTCGACGCCACAAGGAGCGTGATGACGTAGGCGGTGCTGCACTAGCACTA
GAACGGGATCATCGATATGACTATCGGAGCCGGGAGGAGCACTACCACCA
CCACCAACGCGAACGGAGCAGCAATGCGGCTGCAGCCTATGCGAAACACC
ACCTGGGCCATGCCTACCATTACCCTCAGCCGCCTCAACAGCAGCAACAG
CCTCTACCGCCGGCGCCCAGCTATGCTGCCCACCATTATCATCATCACCA
GCATTTAAGTGGAGCTCGAGCTGCTCCCCGCGAATACCATTCCTATCCAT
CGGGCTACCATTCGGGCAGTCGACACGGCGACTACCCAATGGAGGAGCCA
ACGCGACGCAGCAGTAAGTACGCGGAGAGCAAGGATGCTGAGAGCCTGGA
ACAGGATCTGCGATCGAGGTTGCTGAAAAAGCGCCATAACTACGTTAAGG
ATTATGAAACGGAGGAGAACTATGAGCATCGGGTCGAGAGAAGTGATCGC
CGGGAGGGAGGACGCAAAGAGCGGGAGAGAACTGTGCGAAGTACCCACAA
GCAAAACCGTCACGACCGAGTCATTGAGCTGCTGGACAGTCCTGAGCAGG
AGCACCACCATCAGCACCAGCACAAATCGCATCGCAGCAAGTGGCGCGAG
GAGGTTGAGGTTATCAGACGAAAGGTGCCCGAGGACTTGGAGCTGTTGGC
TCGCAGGGAAAAACTTCTTGCCGCTGAACGGGAAAGCCGCCAGCGAAAAC
AGACGGCTCGTGAGGAACTGGAAGCTCGGCGGGAGTTGCTCCGCGAGCGA
AACGAGCACAGTGATGCACTTAGTCCAACAACAGTGGCTGCAAGTGTAAC
CGCAGGTCTGAACATTCATGTGAAGAGGAAGTCCAAGCCGGATAACTATG
AGAAGGAAATCAAACTCAAGAAGCGGCGGGAAGATGATATCGAGGTTATC
CGAGATGATGACGATGAGGAAAGCGAGGAGAGCGACTCAAACGAGGAGGT
TCCTGAGCAAGACAGCGAAGGAAGCGCAACAGAGTCTGGAAGCGAAGACA
GCTATGCTAGCAAAAAGAAGAGCAAGATTAAATCCAAGTCTCAATTGGAA
GACGATGACGAGGATTTACCCTTACCCGACAGTCCACTTAGCGTGGGTGA
GCTATACAAGTCGCCCAAGCAACGTCAGCGATCTCGCTCTGTAAGCTCCA
AGAGCAGCTCCCAGTCCAGTCGAAGCAGTCGGTCCAGATCCCGTTCTAGA
AGTCAAAGCAGCCTAGAGGATGAGGTAGATCGTCAAGACGTGGGGGCAGA
TGCCTCACCCAGCAGCAGCACACGCAGCGAGGAACGTGGAATGACCCAAG
AGCAGCCGGAAGAGAAGCCCGAGGAGAAACTCAAAGAGAAACAGAAGTCT
CTGGAGGAGCAAATTCCGTGCGATGACAAGGGCATTCCCCTGCCCAACTA
TTATCCCGGTGTGCAGGGCTGCCGGTCTGTGGAGGAATTCCAGTGTCTAA
ACCGCATCGAAGAGGGAACCTATGGAGTGGTATATCGAGCCAAGGACAAA
AGAACCAATGAGATTGTGGCTCTTAAGCGTCTGAAAATGGAGAAGGAAAA
GGAGGGATTTCCGATAACATCACTCAGGGAGATCAACACTCTTCTCAAGG
GTCAGCACCCGAATATTGTGACCGTTCGCGAGATCGTGGTCGGATCCAAC
ATGGATAAGATATTTATTGTGATGGACTATGTAGAACACGACCTGAAATC
CCTGATGGAAACGATGAAAAATCGTAAGCAGAGCTTTTTCCCCGGAGAAG
TCAAATGTCTGACGCAGCAGCTTCTGCGGGCGGTGGCCCACCTCCATGAC
AATTGGATATTGCATCGTGACCTGAAGACCTCCAATCTCCTCTTGTCCCA
CAAGGGCATTCTCAAGGTGGGTGATTTCGGATTGGCAAGGGAGTATGGAT
CGCCGATCAAGAAGTATACCTCACTTGTTGTCACTCTCTGGTATCGTGCA
CCCGAGCTCCTTCTCTGCTCGCCGGTTTACTCCACGCCCATAGACGTCTG
GTCGGTAGGCTGCATTTTCGCCGAATTCTTGCAGATGCTGCCGCTCTTTC
CGGGAAAATCTGAAATCGATGAGCTTAACAGGATCTTTAAGGAATTGGGA
ACTCCGAACGAGAAGATCTGGCCAGGATACACCGAGCTCCCAGCCGTGAA
GAACATGTTGTCGCAGAACTCTCAGTTTACCGAGTATCCCGTCTCGCAAC
TGCGCAAGCACTTCCAGGAGAAGACCTCTGAAATGGGCTTGTCGCTGCTG
CAGGGTCTGCTGACGTACGATCCGAAACAAAGACTGAGCGCCGACGCGGC
ACTAAAGCACGGCTTCTTCAAGGAGCTGCCATTGCCCATCGATCCATCCA
TGTTTCCCACCTGGCCGGCCAAGAGCGAGTTGGGAGCCCGCAAGGCGCAA
GCCTCTTCCCCCAAACCGCCATCCGGTGGCTCGCAGTTCAAGCAACTAGG
CCGCGACGAGCCCATCATCGTGGGACCGGGAAACAAGCTCTCATCTGGGA
TTATCACTGGCAACAAGAAGAGCCACGGAGCTGGTGGATCGTCGGCTAGC
ACGGGATTTGTCCTGAACGCTGGAATAACGCAGCGCCAGTTGGCCATGGG
ACCGGGATTCAGTCTGAAGTTCTGAAAGCTTTCTAGACCAT
BS17648.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pitslre-RC | 2859 | CG4268-PC | 1..2859 | 17..2875 | 14295 | 100 | Plus |
Pitslre-RA | 2859 | CG4268-PA | 1..2859 | 17..2875 | 14295 | 100 | Plus |
Pitslre-RG | 2337 | CG4268-PG | 1..2337 | 539..2875 | 11685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pitslre-RC | 3296 | CG4268-RC | 214..3072 | 17..2875 | 14295 | 100 | Plus |
Pitslre-RA | 3355 | CG4268-RA | 273..3131 | 17..2875 | 14295 | 100 | Plus |
Pitslre-RG | 3939 | CG4268-RG | 1014..3809 | 80..2875 | 13980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20773792..20776054 | 80..2342 | 11315 | 100 | Plus |
3L | 28110227 | 3L | 20776172..20776707 | 2340..2875 | 2680 | 100 | Plus |
3L | 28110227 | 3L | 20771800..20771864 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6804 | 371..453 | 124 | 65.1 | Plus |
BS17648.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:11 Download gff for
BS17648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RC | 176..3033 | 17..2874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:23 Download gff for
BS17648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RA | 273..3130 | 17..2874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:15 Download gff for
BS17648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RC | 176..3033 | 17..2874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:53 Download gff for
BS17648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RA | 273..3130 | 17..2874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:53 Download gff for
BS17648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20771800..20771864 | 17..81 | 100 | -> | Plus |
3L | 20773794..20776053 | 82..2341 | 100 | -> | Plus |
3L | 20776174..20776706 | 2342..2874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:23 Download gff for
BS17648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20764900..20764964 | 17..81 | 100 | -> | Plus |
arm_3L | 20766894..20769153 | 82..2341 | 100 | -> | Plus |
arm_3L | 20769274..20769806 | 2342..2874 | 100 | | Plus |
BS17648.3prime Sequence
902 bp (678 high quality bases) assembled on 2007-05-29
> BS17648.3prime
ATGGTCTAGAAAGCTTTCAGAACTTCAGACTGAATCCCGGTCCCATGGCC
AACTGGCGCTGCGTTATTCCAGCGTTCAGGACAAATCCCGTGCTAGCCGA
CGATCCACCAGCTCCGTGGCTCTTCTTGTTGCCAGTGATAATCCCAGATG
AGAGCTTGTTTCCCGGTCCCACGATGATGGGCTCGTCGCGGCCTAGTTGC
TTGAACTGCGAGCCACCGGATGGCGGTTTGGGGGAAGAGGCTTGCGCCTT
GCGGGCTCCCAACTCGCTCTTGGCCGGCCAGGTGGGAAACATGGATGGAT
CGATGGGCAATGGCAGCTCCTTGAAGAAGCCGTGCTTTAGTGCCGCGTCG
GCGCTCAGTCTTTGTTTCGGATCGTACGTCAGCAGACCCTGCAGCAGCGA
CAAGCCCATTTCAGAGGTCTTCTCCTGGAAGTGCTTGCGCAGTTGCGAGA
CGGGATACTCGGTAAACTGAGAGTTCTGCGACAACATGTTCTTCACGGCT
GGGAGCTCGGTGTATCCTGGCCAGATCTTCTCGTTCGGAGTTCCCAATTC
CTTAAAGATCCTGTTAAGCTCATCGATTTCAGATTTTCCCGGAAAGAGCG
GCAGCATCTGCAAGAATTCGGCGAAAATGCAGCCTACCGACCAGACGTCT
ATGGGCGTGGAGTAAACCGGCGAGCAGAGAAGGAGCTCGGGTGCACGATA
CCAGAGAGTGACAACAAGTGAGGTATACTTCTTGATCGGCGATCCATACT
CCCTTGCCAATCCGAAATCACCCACCTTGAGAATGCCCTTGTGGGACAAG
AGGAGATTGNAGGTCTTCAGGTCACGATGCAATATCCAATTGTCATGGAG
GTGGGCCACCGCCCGCAGAAGCTGCTGCGTCAGACATTTGACTTCTCCGG
GG
BS17648.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4268-PA | 2859 | Pitslre-RA | 1974..2859 | 902..17 | 4411 | 99.8 | Minus |
CG4268-PC | 2859 | Pitslre-RC | 1974..2859 | 902..17 | 4411 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pitslre-RG | 3939 | CG4268-RG | 2924..3809 | 902..17 | 4419 | 99.9 | Minus |
Pitslre-RF | 3620 | CG4268-RF | 2605..3490 | 902..17 | 4419 | 99.9 | Minus |
Pitslre-RE | 4391 | CG4268-RE | 3376..4261 | 902..17 | 4419 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20776172..20776707 | 552..17 | 2680 | 100 | Minus |
3L | 28110227 | 3L | 20775702..20776054 | 902..550 | 1754 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:42:30 has no hits.
BS17648.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:01 Download gff for
BS17648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4268-PC | 1974..2859 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:30 Download gff for
BS17648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RE | 3376..4265 | 12..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:12:06 Download gff for
BS17648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RE | 3376..4265 | 12..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:12:06 Download gff for
BS17648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20775702..20776053 | 551..902 | 99 | -> | Minus |
3L | 20776174..20776711 | 12..550 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:30 Download gff for
BS17648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20768802..20769153 | 551..902 | 99 | -> | Minus |
arm_3L | 20769274..20769811 | 12..550 | 99 | | Minus |
BS17648.5prime Sequence
835 bp (744 high quality bases) assembled on 2007-05-29
> BS17648.5prime
GAAGTTATCAGTCGACATGGTCAATTCGTCTGGCAGCGAGGATGGCCAGT
TGCGGAGCCCCAACGATGTGCACTATCACAGCCGAGGCGAGGAGGATGAG
CACGAGGGCGACGCTGATGCCTTGTACATTCAACCACCGCAGGCCAGCCG
AGAATCAGGATCCGGTCCCAGGCGCGAGAAGAAGAAACATTCCCGCGAGC
GTCGACGCCACAAGGAGCGTGATGACGTAGGCGGTGCTGCACTAGCACTA
GAACGGGATCATCGATATGACTATCGGAGCCGGGAGGAGCACTACCACCA
CCACCAACGCGAACGGAGCAGCAATGCGGCTGCAGCCTATGCGAAACACC
ACCTGGGCCATGCCTACCATTACCCTCAGCCGCCTCAACAGCAGCAACAG
CCTCTACCGCCGGCGCCCAGCTATGCTGCCCACCATTATCATCATCACCA
GCATTTAAGTGGAGCTCGAGCTGCTCCCCGCGAATACCATTCCTATCCAT
CGGGCTACCATTCGGGCAGTCGACACGGCGACTACCCAATGGAGGAGCCA
ACGCGACGCAGCAGTAAGTACGCGGAGAGCAAGGATGCTGAGAGCCTGGA
ACAGGATCTGCGATCGAGGTTGCTGAAAAAGCGCCATAACTACGTTAAGG
ATTATGAAACGGAGGAGAACTATGAGCATCGGGTCGAGAGAAGTGATCGC
CGGGAGGGAGGACGCAAAGAGCGGGAGAGAACTGTGCGAAGTACCCACAA
GCAAAACCGTCACGACCGAGTCATTGAGCTGCTGGACAGTCCTGAGCAGG
AGCACCACCATCAGCACCAGCACAAATCGCATCGC
BS17648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4268-PA | 2859 | Pitslre-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
CG4268-PC | 2859 | Pitslre-RC | 1..819 | 17..835 | 4095 | 100 | Plus |
CG4268-PD | 225 | Pitslre-RD | 1..65 | 17..81 | 325 | 100 | Plus |
CG4268-PB | 225 | Pitslre-RB | 1..65 | 17..81 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pitslre-RC | 3296 | CG4268-RC | 214..1032 | 17..835 | 4095 | 100 | Plus |
Pitslre-RA | 3355 | CG4268-RA | 273..1091 | 17..835 | 4095 | 100 | Plus |
Pitslre-RG | 3939 | CG4268-RG | 1014..1769 | 80..835 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20773792..20774547 | 80..835 | 3780 | 100 | Plus |
3L | 28110227 | 3L | 20771800..20771864 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 10:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6804 | 371..453 | 124 | 65.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1104..1139 | 366..401 | 108 | 77.8 | Plus |
BS17648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:05 Download gff for
BS17648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4268-PC | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:52:44 Download gff for
BS17648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RA | 273..1091 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:32 Download gff for
BS17648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RA | 273..1091 | 17..835 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:32 Download gff for
BS17648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20771800..20771864 | 17..81 | 100 | -> | Plus |
3L | 20773794..20774547 | 82..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:52:44 Download gff for
BS17648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20764900..20764964 | 17..81 | 100 | -> | Plus |
arm_3L | 20766894..20767647 | 82..835 | 100 | | Plus |
BS17648.pep Sequence
Translation from 16 to 2874
> BS17648.pep
MVNSSGSEDGQLRSPNDVHYHSRGEEDEHEGDADALYIQPPQASRESGSG
PRREKKKHSRERRRHKERDDVGGAALALERDHRYDYRSREEHYHHHQRER
SSNAAAAYAKHHLGHAYHYPQPPQQQQQPLPPAPSYAAHHYHHHQHLSGA
RAAPREYHSYPSGYHSGSRHGDYPMEEPTRRSSKYAESKDAESLEQDLRS
RLLKKRHNYVKDYETEENYEHRVERSDRREGGRKERERTVRSTHKQNRHD
RVIELLDSPEQEHHHQHQHKSHRSKWREEVEVIRRKVPEDLELLARREKL
LAAERESRQRKQTAREELEARRELLRERNEHSDALSPTTVAASVTAGLNI
HVKRKSKPDNYEKEIKLKKRREDDIEVIRDDDDEESEESDSNEEVPEQDS
EGSATESGSEDSYASKKKSKIKSKSQLEDDDEDLPLPDSPLSVGELYKSP
KQRQRSRSVSSKSSSQSSRSSRSRSRSRSQSSLEDEVDRQDVGADASPSS
STRSEERGMTQEQPEEKPEEKLKEKQKSLEEQIPCDDKGIPLPNYYPGVQ
GCRSVEEFQCLNRIEEGTYGVVYRAKDKRTNEIVALKRLKMEKEKEGFPI
TSLREINTLLKGQHPNIVTVREIVVGSNMDKIFIVMDYVEHDLKSLMETM
KNRKQSFFPGEVKCLTQQLLRAVAHLHDNWILHRDLKTSNLLLSHKGILK
VGDFGLAREYGSPIKKYTSLVVTLWYRAPELLLCSPVYSTPIDVWSVGCI
FAEFLQMLPLFPGKSEIDELNRIFKELGTPNEKIWPGYTELPAVKNMLSQ
NSQFTEYPVSQLRKHFQEKTSEMGLSLLQGLLTYDPKQRLSADAALKHGF
FKELPLPIDPSMFPTWPAKSELGARKAQASSPKPPSGGSQFKQLGRDEPI
IVGPGNKLSSGIITGNKKSHGAGGSSASTGFVLNAGITQRQLAMGPGFSL
KF*
BS17648.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pitslre-PC | 952 | CG4268-PC | 1..952 | 1..952 | 4974 | 100 | Plus |
Pitslre-PA | 952 | CG4268-PA | 1..952 | 1..952 | 4974 | 100 | Plus |
Pitslre-PG | 778 | CG4268-PG | 1..778 | 175..952 | 4000 | 100 | Plus |
Pitslre-PF | 778 | CG4268-PF | 1..778 | 175..952 | 4000 | 100 | Plus |
Pitslre-PE | 778 | CG4268-PE | 1..778 | 175..952 | 4000 | 100 | Plus |