Clone Sequence Records
BS17649.complete Sequence
4268 bp assembled on 2009-12-07
GenBank Submission: KX801125
> BS17649.complete
GAAGTTATCAGTCGACATGCCCACATCCAAACTGCAAGCCAACATGAGCT
ACCGCGAGGTCATACCGCGGAACCTCAGTCCGGCGGAGTGGATCGAGGTG
AAAATTAACACGGGAACCCAGAGCACTTTGCAGGATTTAAAAACCTTCGA
AACCTCCGGCGGCTATTGCTACAAGAATACGAAAAATGTTCAGACCAGAA
ACCGTTTCATATATTGGCGGACATACCAGGATGTCCTGGAACTATCAGAG
GTTAGTTTGGACATCTCCCTGCAGAGGAATCACCTGCGTCTGCGATTCAC
CGACTCCGCTGTGCTGAATGTATCACTCACGGAGCAAGGTACATCCGTCA
CCCTGCTGGTGGTCACGGTCAGCAGTGTGCATCGCTATGTGTTTCCCTTG
AAGGTCGCTGGGCAGGAAGGTGGCGCAGCTTCTCCAGAGGATCTGCTATC
CCAGTCCATTTTCTACGACGTCAATGACAAGATCAATGATCCCAGCACTT
ACTATGTCACGGATGGCTTTGGAACTATGCCCAACGCGGCTGTATCGTAC
CTCACTCAAGACTCCCAGTCAGCCTACTTTGCGGTGGCGTATCAGAGCAA
ACTACTGCTTCACGTTATGAAATGCTCCACCGGCCATACTATCACCCACG
AAATCAAGGAGCCGAAGCTAATGCCATGGTTTCTGTCGAATCTCAAGGGT
GCCCTCACCGGCCGCTCTGAAACGTTGGAGGCAGCCACGTCCATGGCTTT
CAGTGAAATCGGGGGGGAAATTTTCATTCTGGTTCTGTATCGCAATAATG
AGCTGCGTCTATGGTCAGTGGATAACTTGCAGACTGTAGCCAGCATTAAC
TGCTCCACCGAACTGGGACAGGACTCAGCAGCTCAAGGACCACAAAACAG
CCAGCTCCGAAAAATAAGCGATCAAAACTTCTGTCTATTTCTCTCGCACA
ATTCCCGAGCTGAGTTTATATGCGTTAGCATAATGCCCGATGCCGACGAT
GCCAGCGTTATCAATTTGGTGCAGAACATGGTGCCGGCGCCGCAAACGGA
TTTGGTCGACTTCGATGCCACATCCTCGCACATCTGGGCCCTTTGGAGCA
ACGCTGAAGGCGATTTCCATGTCTCGGCAGCATATTTTGCCTCCAACAAC
GCAATCAAATGGGTTTCGGCTGCTCTAGAACCGCCACCGGATCGGTATTG
TCTCACCATGGAGCAGGGAGTGGATCCACGCGAAACTTACTGCAGCTATA
TATTTCATCCTGGTCGATTTGACCGAAATGTAATTGCCAAGGCTTTATAT
ATGTTCAGACGCGTTAACCTGCAATTCGATGTAAAGCAACTTTCCATGTC
AGTGCTCAAGGAGCAGGTATGCCAGGCCGTGGAAGATGAAATCCAAAACG
AACTGAAAGACTTTGTGGTCACCGATGAGGAGTACTTGGAGATATCCACT
CGGCTGTGGGATCGCTTTTACTCCTGCTGCGAACAGTATCACATTAAGCT
TTCCGAGCCGACAGGACTCGCCGTTCTTGGTGGAATGGATGCAGTATGTT
TGGTTAGAAGGCAATCATTCGCATTGCTGCGCCCCTGCGAAGTGCTCGAG
CACCTGTTGCTCATCGGCGAGCATAACGATGAAGTGGCGACATATGTGGC
GCCACTATTTCGCAACGATCCCGAAATGGCCAAGGGTTTTGTGGAGCTCA
TGAATGTGGTGACACTGCTTGATAAACTAATTTCGGAGGACATTAAAATC
GAGCTAGATAAACAGCTTTACCAGCGGGAGTCACCGGTTGAAGTAATATC
TAAGCTGGTGGCTAGAATCAGTATGATCGATGATAATGGTCCAATATTGC
CATCAAACTGTGTGAGGCAAATCCAACAGAAGCTGCAGAATATACCAAAT
CTTGAACCCGCTTTGGAAATGCTGCTCGATGTGCTGTGTATGATTGATCC
AGATGAACCGCCGCATGATTACTCCCTTTCTACGCGCTTCTTGCAGTCGT
CTGGGGCTCTAATGGGTAGCGAATATGGACTTTCTATTTTGTCCGAAACA
GTGAAGCAAATGGCAATGATACGGTTTTCTGTTTGCCGAAACCTTTTGGT
ATTGCAGTACATGGCTTATGGTCAGAACGAAATGGAAAGCGAAAATGTTT
TAACAAATTTAAATTATTTGAACTCATATTATACACTGGTTTGGATTGCC
GAGACACCCATTTCATCGAGTACCCCAGCTGGATTCGAGGCATCTATTCA
ACGATTGAGCCGCGCCCAACTTTTCAGCGGCTATAATCGACCATACTCCA
GCCATCTGAAACATAATGGGAACGATCAGACCACTCTGCTCCGACTGTTC
CTGGAATCGAAAGGTCTGTTCAGCGCCTTGACTATGCTGCTGAAGCATGA
CAGTTTGTCGCTGGACTCGGAGCAATTGAATCTACGCCAGTCTTTGCTCC
AACTTGTTGGATACATCAATAAGATGCTTTGGCCGGGATCTCCGATTTAC
GTATTTCCGGAATGGTTATTTGGGACCTGTCATCACATCATTGTTCAGGA
TTACGTGCGCATTTTGTCAAACTGGTGTTCCGTACAAAAACATGCCAGAC
GCTTTATGCTAGCCGTATCTCTATTGGATTGCGGTGAGGCCCACAAGGCC
GTGCATCTCTTTCACGAGGCGGAGTCTGGCATTGTGGAGGATGACTTCCT
CTTTGAGCATGTACTGAAAAATACCCCTCTATACGGCAAATTACAGAATA
GCGTCAGCCGTGGCGATACAATTTCCCCCGAAGACACAAAACTGGCAATT
GTTCACTACTATCTTAAGGTTATCCAGCTCTTTGAACAGCATTCCGCATT
GGACTACATTATTCAACTGGCTGACATGGCCATTAGGGTGCTGCAGCCAG
ATGATCCTCAGTTGCCCATGTTCCAGTCAATAGTGTTCAATAATCATCTG
CAGTTGGGACACTACGTGGAGGCGTACACCGCCTTAGTCAACAATGCAGA
TATTTCAAGGCGTAAGGATTGCCTTCGCCAGTTGGTCATAACGCTGTTCC
AGAATAAATGTCTGCCACTGCTTATGCAGTTCTCCTACATCGGGTTGCAA
GACGAGTTCGAGAGCATTGTTGAATCCCGGGCACGATCAATGAGCATCGA
TCAGAACGAAGTCTACAACTTTTTGTATGCATTCCATACGAACAAGGGTA
ACATGAGAAAAGCTTCTACGGTTATGTATGAGCAGGCCATGCGGTTTCAA
GTAGACAGCGATGCACCAAACGCGCTAGAGAAACGTTGCTCCTCGCTGTT
AATTTGCCTAAACTGTTTGCACCTAGTTGACAGCCGCTACAGATGGATTG
CCAAGCCTGTTCTTGGTGATGAGCAGGTGATTACCATAGATCAGGATAAC
GACGATGGTGAGCCCAAATGTGACGAGGACAAGAGAGGCCAGGAGGTGGT
TGTTCTAGAGCTGGCTGATATCCGAAGGGAACTGGTGCACGCAGAAGCTT
TACGTGAGCTTTCCTTCTACCGCAAAGATACAGCTGCCTACGAGCGGGCC
ACACCCGAGGAGCTATCATACCTGCTGGCTAGTTCCGGCCTGTACACCGC
GGCATTGAAACTTTCGCGGGGACACTCGTTCTCTGTGCTCCCCATATTCG
AGAGTCTGACATCCGCTTGTGTTGCTGCCACTGAGGACAAGTCGTCGGAC
GCCTGGAACTGGCTGCAAAACAACGACATGGCAGATCTACCTCATCGAAG
TAATGCTGCCGATATGGCCTGGACTTTACTTCAAAAACTGGTTGTGGATA
ACGAGGCAAAAGACTCCACCTTGATAAGAAAGAGCGTGGTTCAAAGGCTT
CTCGGGTTAAACGCCTTCTTGCCCCAGTGGCTGATAAACTCCTACAAGTT
ATCCCACTCCCGGGAACTGCTCCACTTACTTGTGAAACACAATCGTCTGC
TGGAAGCCGCAGATCTGGGATGTGAAATAATCGCCGGCATGCTGGGAGCA
GGTAGCGAGTATTTCGAATTCAAACACGCGGTGAACATAGCAAACCCACA
GCTCTGCTTCCCCATCAGCACGATCGATTTGCTGCTGCACGGTTTAAAGA
TTAATGGCAAGGATGATCTTGATTATGAAATGGCTTACTTTAAACTCGAA
GAAGAAGTTCAAAGATATATTGAGACCATAAAGCGCACCACCGATGATAA
GATGAGCATGGCCGTTCTGCAGATGCGAACGGATCTTCAGGAAGAACGTT
AAAAGCTTTCTAGACCAT
BS17649.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup160-RA | 4236 | CG4738-PA | 1..4236 | 17..4252 | 21180 | 100 | Plus |
| Nup160-RB | 4236 | CG4738-PB | 1..4236 | 17..4252 | 21180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup160-RA | 4747 | CG4738-RA | 103..4338 | 17..4252 | 21180 | 100 | Plus |
| Nup160-RB | 4404 | CG4738-RB | 103..4338 | 17..4252 | 21180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11125483..11126149 | 1301..1967 | 3335 | 100 | Plus |
| 2L | 23513712 | 2L | 11127078..11127692 | 2598..3212 | 3075 | 100 | Plus |
| 2L | 23513712 | 2L | 11127752..11128279 | 3207..3734 | 2625 | 99.8 | Plus |
| 2L | 23513712 | 2L | 11124195..11124687 | 216..708 | 2465 | 100 | Plus |
| 2L | 23513712 | 2L | 11125000..11125409 | 891..1300 | 2050 | 100 | Plus |
| 2L | 23513712 | 2L | 11128333..11128734 | 3732..4133 | 2010 | 100 | Plus |
| 2L | 23513712 | 2L | 11126606..11126848 | 2236..2478 | 1215 | 100 | Plus |
| 2L | 23513712 | 2L | 11124745..11124926 | 709..890 | 910 | 100 | Plus |
| 2L | 23513712 | 2L | 11126388..11126550 | 2073..2235 | 815 | 100 | Plus |
| 2L | 23513712 | 2L | 11128806..11128926 | 4132..4252 | 605 | 100 | Plus |
| 2L | 23513712 | 2L | 11126904..11127023 | 2479..2598 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 11126214..11126322 | 1967..2075 | 545 | 100 | Plus |
| 2L | 23513712 | 2L | 11124039..11124143 | 113..217 | 525 | 100 | Plus |
| 2L | 23513712 | 2L | 11123879..11123976 | 17..114 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:17:38 has no hits.
BS17649.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:56 Download gff for
BS17649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4738-RA | 101..4334 | 17..4250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:47 Download gff for
BS17649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup160-RB | 103..4336 | 17..4250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:03 Download gff for
BS17649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4738-RA | 101..4334 | 17..4250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:18 Download gff for
BS17649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup160-RB | 103..4336 | 17..4250 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:18 Download gff for
BS17649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11123879..11123975 | 17..113 | 100 | -> | Plus |
| 2L | 11124040..11124142 | 114..216 | 100 | -> | Plus |
| 2L | 11124196..11124687 | 217..708 | 100 | -> | Plus |
| 2L | 11124745..11124926 | 709..890 | 100 | -> | Plus |
| 2L | 11125000..11125409 | 891..1300 | 100 | -> | Plus |
| 2L | 11125483..11126149 | 1301..1967 | 100 | -> | Plus |
| 2L | 11126215..11126320 | 1968..2073 | 100 | -> | Plus |
| 2L | 11126389..11126550 | 2074..2235 | 100 | -> | Plus |
| 2L | 11126606..11126848 | 2236..2478 | 100 | -> | Plus |
| 2L | 11126904..11127022 | 2479..2597 | 100 | -> | Plus |
| 2L | 11127078..11127692 | 2598..3212 | 100 | -> | Plus |
| 2L | 11127758..11128279 | 3213..3734 | 100 | -> | Plus |
| 2L | 11128336..11128733 | 3735..4132 | 100 | -> | Plus |
| 2L | 11128807..11128924 | 4133..4250 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:47 Download gff for
BS17649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11123879..11123975 | 17..113 | 100 | -> | Plus |
| arm_2L | 11124040..11124142 | 114..216 | 100 | -> | Plus |
| arm_2L | 11124196..11124687 | 217..708 | 100 | -> | Plus |
| arm_2L | 11124745..11124926 | 709..890 | 100 | -> | Plus |
| arm_2L | 11125000..11125409 | 891..1300 | 100 | -> | Plus |
| arm_2L | 11125483..11126149 | 1301..1967 | 100 | -> | Plus |
| arm_2L | 11126215..11126320 | 1968..2073 | 100 | -> | Plus |
| arm_2L | 11126389..11126550 | 2074..2235 | 100 | -> | Plus |
| arm_2L | 11126606..11126848 | 2236..2478 | 100 | -> | Plus |
| arm_2L | 11126904..11127022 | 2479..2597 | 100 | -> | Plus |
| arm_2L | 11127078..11127692 | 2598..3212 | 100 | -> | Plus |
| arm_2L | 11127758..11128279 | 3213..3734 | 100 | -> | Plus |
| arm_2L | 11128336..11128733 | 3735..4132 | 100 | -> | Plus |
| arm_2L | 11128807..11128924 | 4133..4250 | 100 | | Plus |
BS17649.3prime Sequence
909 bp (749 high quality bases) assembled on 2007-05-29
> BS17649.3prime
ATGGTCTAGAAAGCTTTTAACGTTCTTCCTGAAGATCCGTTCGCATCTGC
AGAACGGCCATGCTCATCTTATCATCGGTGGTGCGCTTTATGGTCTCAAT
ATATCTTTGAACTTCTTCTTCGAGTTTAAAGTAAGCCATTTCATAATCAA
GATCATCCTTGCCATTAATCTTTAAACCGTGCAGCAGCAAATCGATCGTG
CTGATGGGGAAGCAGAGCTGTGGGTTTGCTATGTTCACCGCGTGTTTGAA
TTCGAAATACTCGCTACCTGCTCCCAGCATGCCGGCGATTATTTCACATC
CCAGATCTGCGGCTTCCAGCAGACGATTGTGTTTCACAAGTAAGTGGAGC
AGTTCCCGGGAGTGGGATAACTTGTAGGAGTTTATCAGCCACTGGGGCAA
GAAGGCGTTTAACCCGAGAAGCCTTTGAACCACGCTCTTTCTTATCAAGG
TGGAGTCTTTTGCCTCGTTATCCACAACCAGTTTTTGAAGTAAAGTCCAG
GCCATATCGGCAGCATTACTTCGATGAGGTAGATCTGCCATGTCGTTGTT
TTGCAGCCAGTTCCAGGCGTCCGACGACTTGTCCTCAGTGGCAGCAACAC
AAGCGGATGTCAGACTCTCGAATATGGGGAGCACAGAGAACGAGTGTCCC
CGCGAAAGTTTCAATGCCGCGGTGTACAGGCCGGAACTAGCCAGCAGGTA
TGATAGCTCCTCGGGTGTGGCCCGCTCGTAGGCAGCTGTATCTTTGCGGT
AGAAGGAAAGCTCACGTAAAGCTTCTGCGTGCACCAGTTCCCTTCGGATA
TCAGCCAGCTCTAGAACAACCACCTCCTGGCCTCTCTTGTCCTCGTCACA
TTTGGGCTCACCATCGTCGTTATCCTGATCTATGGTAATCACCTGCTCAT
CACCAAGAA
BS17649.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4738-PA | 4236 | CG4738-RA | 3344..4236 | 909..17 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup160-RA | 4747 | CG4738-RA | 3446..4338 | 909..17 | 4465 | 100 | Minus |
| Nup160-RB | 4404 | CG4738-RB | 3446..4338 | 909..17 | 4465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11128333..11128734 | 537..136 | 2010 | 100 | Minus |
| 2L | 23513712 | 2L | 11127905..11128279 | 909..535 | 1875 | 100 | Minus |
| 2L | 23513712 | 2L | 11128806..11128926 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:42:37 has no hits.
BS17649.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:10 Download gff for
BS17649.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4738-PA | 3346..4236 | 17..907 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:33 Download gff for
BS17649.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup160-RB | 3446..4343 | 11..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:12:33 Download gff for
BS17649.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup160-RB | 3446..4343 | 11..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:12:33 Download gff for
BS17649.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11127905..11128279 | 535..909 | 100 | -> | Minus |
| 2L | 11128336..11128733 | 137..534 | 100 | -> | Minus |
| 2L | 11128807..11128931 | 11..136 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:33 Download gff for
BS17649.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11127905..11128279 | 535..909 | 100 | -> | Minus |
| arm_2L | 11128336..11128733 | 137..534 | 100 | -> | Minus |
| arm_2L | 11128807..11128931 | 11..136 | 98 | | Minus |
BS17649.5prime Sequence
867 bp (764 high quality bases) assembled on 2007-05-29
> BS17649.5prime
GAAGTTATCAGTCGACATGCCCACATCCAAACTGCAAGCCAACATGAGCT
ACCGCGAGGTCATACCGCGGAACCTCAGTCCGGCGGAGTGGATCGAGGTG
AAAATTAACACGGGAACCCAGAGCACTTTGCAGGATTTAAAAACCTTCGA
AACCTCCGGCGGCTATTGCTACAAGAATACGAAAAATGTTCAGACCAGAA
ACCGTTTCATATATTGGCGGACATACCAGGATGTCCTGGAACTATCAGAG
GTTAGTTTGGACATCTCCCTGCAGAGGAATCACCTGCGTCTGCGATTCAC
CGACTCCGCTGTGCTGAATGTATCACTCACGGAGCAAGGTACATCCGTCA
CCCTGCTGGTGGTCACGGTCAGCAGTGTGCATCGCTATGTGTTTCCCTTG
AAGGTCGCTGGGCAGGAAGGTGGCGCAGCTTCTCCAGAGGATCTGCTATC
CCAGTCCATTTTCTACGACGTCAATGACAAGATCAATGATCCCAGCACTT
ACTATGTCACGGATGGCTTTGGAACTATGCCCAACGCGGCTGTATCGTAC
CTCACTCAAGACTCCCAGTCAGCCTACTTTGCGGTGGCGTATCAGAGCAA
ACTACTGCTTCACGTTATGAAATGCTCCACCGGCCATACTATCACCCACG
AAATCAAGGAGCCGAAGCTAATGCCATGGTTTCTGTCGAATCTCAAGGGT
GCCCTCACCGGCCGCTCTGAAACGTTGGAGGCAGCCACGTCCATGGCTTT
CAGTGAAATCGGGGGGGAAATTTTCATTCTGGTTCTGTATCGCAATAATG
AGCTGCGTCTATGGTCAGTGGATAACTTGCAGACTGTAGCCAGCATTAAC
TGCTCCACCGAACTGGG
BS17649.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4738-PA | 4236 | CG4738-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup160-RA | 4747 | CG4738-RA | 103..953 | 17..867 | 4255 | 100 | Plus |
| Nup160-RB | 4404 | CG4738-RB | 103..953 | 17..867 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11124195..11124687 | 216..708 | 2465 | 100 | Plus |
| 2L | 23513712 | 2L | 11124745..11124903 | 709..867 | 795 | 100 | Plus |
| 2L | 23513712 | 2L | 11124039..11124143 | 113..217 | 525 | 100 | Plus |
| 2L | 23513712 | 2L | 11123879..11123976 | 17..114 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:42:44 has no hits.
BS17649.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:14 Download gff for
BS17649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4738-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:34 Download gff for
BS17649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup160-RB | 97..953 | 10..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:13:22 Download gff for
BS17649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup160-RB | 97..953 | 10..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:13:22 Download gff for
BS17649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11124196..11124687 | 217..708 | 100 | -> | Plus |
| 2L | 11123873..11123975 | 10..113 | 97 | -> | Plus |
| 2L | 11124040..11124142 | 114..216 | 100 | -> | Plus |
| 2L | 11124745..11124903 | 709..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:34 Download gff for
BS17649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11124745..11124903 | 709..867 | 100 | | Plus |
| arm_2L | 11123873..11123975 | 10..113 | 97 | -> | Plus |
| arm_2L | 11124040..11124142 | 114..216 | 100 | -> | Plus |
| arm_2L | 11124196..11124687 | 217..708 | 100 | -> | Plus |
BS17649.pep Sequence
Translation from 16 to 4251
> BS17649.pep
MPTSKLQANMSYREVIPRNLSPAEWIEVKINTGTQSTLQDLKTFETSGGY
CYKNTKNVQTRNRFIYWRTYQDVLELSEVSLDISLQRNHLRLRFTDSAVL
NVSLTEQGTSVTLLVVTVSSVHRYVFPLKVAGQEGGAASPEDLLSQSIFY
DVNDKINDPSTYYVTDGFGTMPNAAVSYLTQDSQSAYFAVAYQSKLLLHV
MKCSTGHTITHEIKEPKLMPWFLSNLKGALTGRSETLEAATSMAFSEIGG
EIFILVLYRNNELRLWSVDNLQTVASINCSTELGQDSAAQGPQNSQLRKI
SDQNFCLFLSHNSRAEFICVSIMPDADDASVINLVQNMVPAPQTDLVDFD
ATSSHIWALWSNAEGDFHVSAAYFASNNAIKWVSAALEPPPDRYCLTMEQ
GVDPRETYCSYIFHPGRFDRNVIAKALYMFRRVNLQFDVKQLSMSVLKEQ
VCQAVEDEIQNELKDFVVTDEEYLEISTRLWDRFYSCCEQYHIKLSEPTG
LAVLGGMDAVCLVRRQSFALLRPCEVLEHLLLIGEHNDEVATYVAPLFRN
DPEMAKGFVELMNVVTLLDKLISEDIKIELDKQLYQRESPVEVISKLVAR
ISMIDDNGPILPSNCVRQIQQKLQNIPNLEPALEMLLDVLCMIDPDEPPH
DYSLSTRFLQSSGALMGSEYGLSILSETVKQMAMIRFSVCRNLLVLQYMA
YGQNEMESENVLTNLNYLNSYYTLVWIAETPISSSTPAGFEASIQRLSRA
QLFSGYNRPYSSHLKHNGNDQTTLLRLFLESKGLFSALTMLLKHDSLSLD
SEQLNLRQSLLQLVGYINKMLWPGSPIYVFPEWLFGTCHHIIVQDYVRIL
SNWCSVQKHARRFMLAVSLLDCGEAHKAVHLFHEAESGIVEDDFLFEHVL
KNTPLYGKLQNSVSRGDTISPEDTKLAIVHYYLKVIQLFEQHSALDYIIQ
LADMAIRVLQPDDPQLPMFQSIVFNNHLQLGHYVEAYTALVNNADISRRK
DCLRQLVITLFQNKCLPLLMQFSYIGLQDEFESIVESRARSMSIDQNEVY
NFLYAFHTNKGNMRKASTVMYEQAMRFQVDSDAPNALEKRCSSLLICLNC
LHLVDSRYRWIAKPVLGDEQVITIDQDNDDGEPKCDEDKRGQEVVVLELA
DIRRELVHAEALRELSFYRKDTAAYERATPEELSYLLASSGLYTAALKLS
RGHSFSVLPIFESLTSACVAATEDKSSDAWNWLQNNDMADLPHRSNAADM
AWTLLQKLVVDNEAKDSTLIRKSVVQRLLGLNAFLPQWLINSYKLSHSRE
LLHLLVKHNRLLEAADLGCEIIAGMLGAGSEYFEFKHAVNIANPQLCFPI
STIDLLLHGLKINGKDDLDYEMAYFKLEEEVQRYIETIKRTTDDKMSMAV
LQMRTDLQEER*
BS17649.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup160-PA | 1411 | CG4738-PA | 1..1411 | 1..1411 | 7288 | 100 | Plus |
| Nup160-PB | 1411 | CG4738-PB | 1..1411 | 1..1411 | 7288 | 100 | Plus |
