Clone BS17656 Report

Search the DGRC for BS17656

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG6227-RA
Protein status:BS17656.pep: full length peptide match
Sequenced Size:3707

Clone Sequence Records

BS17656.3prime Sequence

881 bp (819 high quality bases) assembled on 2007-05-29

> BS17656.3prime
ATGGTCTAGAAAGCTTCTAGACCACCTTGTAGCGACCCTTGTTAAAGACA
TGATGAGCGGAGCTGAGCTTGAGCAGCTCCTCCTTGATTAGCCGCGTGAT
CTCGCGCTTGGCCTTCTGCACGGCCAGTTCACTGCAGCTCTCGATGGCGA
GGTAGAGTTTGCGCTCGCCATCCGGCGGATTCTTGCCCTGCGGCACATAT
GTGCCACGTACGGTGAGACCTGCCTCCGAGTACTCAGAGATCTGAGCGAG
TGCCTCCTTGGACGTGACCTTCCATCGCGCTTGCTGCGGGAAATCGTTAA
TCTCCAGTTCCTCCTCGTATTTGGTAAACGGGTTGGTTGTGCCACCCACC
AGCGGGCCCAGTCCTTCCTCATCCTCTTTGGGCTGATAGTTCAGTTTGTT
GTTCAACTTGGCGGCCATCTGCTCGGCCACCGTGCGAGCGGTCAGCAGGG
TCGCGGCAGCTCCCGTGACATGCGGTCCCTTGATCATGGGCTCCACAGTG
ACCACGCTGCCCTTGGTGTCCAGGTTCTTGCTGCTGTTGATCTTGGAGGC
CAATCGTTTGGCTAGCTCCAGCTTATCAGAGCTTAGAGCACCGCCCATGG
CCACACTTGGAGCTCCACCCGCGGCTGCGGGCGCCGAAGCCGCAGCAATG
GCAATATTGGCAGCAGCCGCAGCTGCCGCCGCTTGAGCCGCCGCCGAGGC
CAGTGCCGGATTAGCTCCAGAAACTGCCGCAGCTGCGGCTGCAGCCGCAG
CAGCTGCTGCCGCCGCGGCTGTGGCCGCGGCCGATGTATCCCTTACCGTG
CGCTTGGCCGCAAAGATTTGCTNCATCTGCTGGTCAATATCCTGCTCGAT
GTCCTCCTCATCATCGGAATCGGGCAGTCCC

BS17656.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-PA 3675 CG6227-RA 2811..3675 881..17 4206 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-RA 4251 CG6227-RA 3048..3913 881..16 4259 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15348818..15349683 881..16 4259 99.4 Minus
Blast to na_te.dros performed 2015-02-13 13:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10445..10581 767..634 129 58.3 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6029..6094 606..671 123 65.2 Plus
TART-C 11124 TART-C TARTC 11124bp 7484..7547 606..669 113 64.1 Plus

BS17656.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:48 Download gff for BS17656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6227-PA 2811..3675 17..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:01:23 Download gff for BS17656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 3048..3916 12..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:54 Download gff for BS17656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 3048..3916 12..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:54 Download gff for BS17656.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15348818..15349686 12..881 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:01:23 Download gff for BS17656.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15242851..15243719 12..881 99   Minus

BS17656.5prime Sequence

889 bp (754 high quality bases) assembled on 2007-05-29

> BS17656.5prime
GAAGTTATCAGTCGACATGTCGAAAAGTTCCGGGCGCGATCGAGACAGGG
AGCGCGACCGGGAGAGAGAGAGGGAGCGCGACCGTGAGAGAGAGCGCGAC
AGGGATCGTGAGCGGGACAACCGGCACGACAGTCGCAGTCGCGACTATGA
TATGGGCAAGTCCAGGAACGGTGGAGGCGGCGGAGCCGGTGGTGGCTCCC
GGAACATGCGCGAAGACCGGAAGCGCGGAAAGGACATGATCAGCGATCGT
GGAAAACGCGACGATAAGCGGAGGAAGTGCTCCAGGTCAAAGGATTACGA
GAAGGACAATTCGCCCCACTACAGGCGTCTGGACAAGGATCGTGACCGTG
ATCGGGATCGCGATCGGCAGCGAGAGAAGGAACGAGAGCGCGAGAAGGAA
AAGGAGCGCGAGAAGGAAAAGGAGCGCGAGCGGGACAAGGATCGGGAGCG
AGATCGCCAGCGAGAAAAGGAATCCGATAGCAGACGAGCGGCCGCAGCTG
CTCCGCTGATTATACCATTGCTCTCGACCAGCTGCTCCGAAGAGGAGGTG
GAGGAGATCGACAAGGAGGAGCAGCAGCGTCGTCTGGAGCAAGAGATGAT
TAAGCGGCGCGAGCGAATCGAACGTTGGCGCGCGGAACGCAAGCGGGACA
CTAAGGCGGCTGTCGTGGCGCCGTCGCTGGTCAATTCCGCAAAGAAATGG
AGTCTGGAGGACGAGTCTGAGGAGGACGACAGCAATCCCGCTCCGCCGCT
GGACAGTGGGAAAAAGGACGCCGAACCGGACTCGCCGCCTTCAAAATTCC
ACAGCATACGCAAGCGCTTCGACGATGACGTGGTCGAGTCGAAGTTCTCG
CCCCGTTAGCGTCCCACCTTTAGCAAATCATTTGGCAAA

BS17656.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-PA 3675 CG6227-RA 1..837 17..853 4185 100 Plus
CG6227-PA 3675 CG6227-RA 842..873 858..889 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-RA 4251 CG6227-RA 237..1110 16..889 4325 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15346098..15346677 310..889 2855 99.5 Plus
X 23542271 X 15345487..15345763 33..309 1385 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:13:21 has no hits.

BS17656.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:54 Download gff for BS17656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6227-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:06:38 Download gff for BS17656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 232..1107 10..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:06 Download gff for BS17656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 232..1107 10..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:06 Download gff for BS17656.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15345400..15345422 10..33 91 -> Plus
X 15345488..15345763 34..309 100 -> Plus
X 15346098..15346674 310..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:06:38 Download gff for BS17656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15239433..15239455 10..33 91 -> Plus
arm_X 15239521..15239796 34..309 100 -> Plus
arm_X 15240131..15240707 310..886 99   Plus

BS17656.complete Sequence

3707 bp assembled on 2010-05-14

GenBank Submission: KX805453

> BS17656.complete
GAAGTTATCAGTCGACATGTCGAAAAGTTCCGGGCGCGATCGAGACAGGG
AGCGCGACCGGGAGAGAGAGAGGGAGCGCGACCGTGAGAGAGAGCGCGAC
AGGGATCGTGAGCGGGACAACCGGCACGACAGTCGCAGTCGCGACTATGA
TATGGGCAAGTCCAGGAACGGTGGAGGCGGCGGAGCCGGTGGTGGCTCCC
GGAACATGCGCGAAGACCGGAAGCGCGGAAAGGACATGATCAGCGATCGT
GGAAAACGCGACGATAAGCGGAGGAAGTGCTCCAGGTCAAAGGATTACGA
GAAGGACAATTCGCCCCACTACAGGCGTCTGGACAAGGATCGTGACCGTG
ATCGGGATCGCGATCGGCAGCGAGAGAAGGAACGAGAGCGCGAGAAGGAA
AAGGAGCGCGAGAAGGAAAAGGAGCGCGAGCGGGACAAGGATCGGGAGCG
AGATCGCCAGCGAGAAAAGGAATCCGATAGCAGACGAGCGGCCGCAGCTG
CTCCGCTGATTATACCATTGCTCTCGACCAGCTGCTCCGAAGAGGAGGTG
GAGGAGATCGACAAGGAGGAGCAGCAGCGTCGTCTGGAGCAAGAGATGAT
TAAGCGGCGCGAGCGAATCGAACGTTGGCGCGCGGAACGCAAGCGGGACA
CTAAGGCGGCTGTCGTGGCGCCGTCGCTGGTCAATTCCGCAAAGAAATGG
AGTCTGGAGGACGAGTCTGAGGAGGACGACAGCAATCCCGCTCCGCCGCT
GGACAGTGGGAAAAAGGACGCCGAACCGGACTCGCCGCCTTCAAAATTCC
ACAGCATACGCAAGCGCTTCGACGATGACGTGGTCGAGTCGAAGTTCTCG
CCCGTTAAGCGTCCCACCTTTAGCAAATCATTTGGCAAATTGGGCATTGG
CCTGGCCACCAAAGCCGAGGCGGATATCAAGAAGGAGCCACCGCCGGTGG
ACACCAAAAAGGAGATCAAAAAGAAGCCCGAACCAGTAGCGGCCAAAATG
GAGATCGTTGAAGAGCCCACCGTCGCAGCAGGGGAGAAGACCAAGAAGGA
GCCGGAACAGCCGCATGTGGGTGCTAAATCGGAGCCGGAAGTGGAAGACA
AGCCGCAACCCGAAGCCGAGCCAGAAGACGAAATCGATCCACTGGATGCC
TACATGCAGGAGGTCAACAACGAGATGCGGCGTGTGAACAATTTTGTCAA
TCCACCCGCCAAATCGCAGGGTGTCGTGATCCTCACGGGAGTGGCCAAAA
AGAAGACGACGACGTTGAAGAAGGGCGAGGTGATAGAACAAAATATGGAC
AGCTTGGAGTACTCTAGCGAGGACGAACTGGAGGACATACGTGACACGGC
CGTTAATCTGGCGATGAAGCACCGCAAGGAGCTGGCCAAGATTGATCATT
CCTCGGTTACGTATGCGCCCTTCCGCAAGAACTTCTATGTCGAGGTGCCG
GAACTGACTCGCATGACGGCCGCCGATGTGGAGAAGTACCGCTCCGACCT
TGAGGGCATCCAGGTTAAGGGCAAGGGCTGTCCAAAGCCCATTAAGACTT
GGGCACAGTGCGGCGTCAGCAAGAAAGAGATGGAAGTGCTGCGACGGCTG
GGCTTCGAGAAGCCCACGCCCATCCAGTGCCAGGCCATACCGGCCATCAT
GTCCGGACGGGATCTGATAGGTATTGCTAAAACTGGCAGTGGCAAGACGT
TGGCATTCATTTTACCAATGTTTAGGCATATTTTGGACCAGCCGAGCATG
GAGGATGGCGACGGCGCTATCGCTATCATTATGGCGCCAACTCGCGAACT
CTGCATGCAGATCGGCAAGGACATCCGCAAGTTTAGCAAGTCGCTCGGCC
TGCGGCCAGTTTGTGTGTACGGCGGCACGGGGATCTCTGAGCAAATTGCC
GAGCTGAAGCGTGGCGCCGAGATAATTGTATGCACGCCTGGCCGCATGAT
CGACATGCTGGCGGCGAATTCTGGACGTGTGACGAACCTGCGTCGCGTCA
CCTATGTCGTCTTGGACGAGGCAGATCGCATGTTCGACATGGGCTTCGAG
CCGCAGGTGATGCGCATCATCGATAACGTGCGACCGGATCGCCAGACGGT
CATGTTTAGCGCTACGTTTCCACGGCAAATGGAGGCGTTAGCCAGACGCA
TACTTAAGAAACCCATCGAGGTGATCGTCGGCGGTCGGTCGGTGGTGTGC
AAAGAAGTCGAACAGCACGTAGTCATTCTCAACGACGATGCCAAGTTCTT
CAAGCTGTTGGAGCTGCTAGGCATATACCAGGAGGCGGGCAGCATCATTG
TGTTTGTCGATAAGCAGGAGAACGCTGACATCCTGCTGCGCGACCTTATG
AAGGCATCGTATCCGTGCATGAGCCTGCACGGCGGCATCGATCAGTTCGA
TCGCGACTCCACCATTATCGACTTCAAGTCGGGCAAGGTGCGCCTACTGA
TTGCCACCTCGGTGGCGGCGCGCGGTTTGGATGTTAAGGATCTCATACTG
GTGGTCAACTACGATGTGCCCAACCACTACGAGGACTATGTTCACAGATG
TGGTCGCACCGGTCGAGCGGGCAAAAAGGGCAGCGCCTACACGTTTATCA
CACCGGAGCAATCGCGCTATGCCGGCGACATTATCCGCGCCATGGACCTA
TCAGGCACACTGATTCCCGCCGAGCTGCAGGCACTGTGGACGGAGTATAA
GGCGCTCCAGGAGGCCGAGGGCAAGACGGTGCACACGGGCGGCGGCTTTA
GCGGCAAGGGCTTCAAGTTCGACGAGCAGGAGTTCAATGCCGCCAAGGAG
AGCAAGAAGCTGCAGAAGGCGGCCTTGGGACTGGCCGATTCCGATGATGA
GGAGGACATCGAGCAGGATATTGACCAGCAGATTGAGCAAATCTTTGCGG
CCAAGCGCACGGTTAAGGATACATCGGCCGCGGCCACAGCCGCGGCGGCA
GCAGCTGCTGCGGCTGCAGCCGCAGCTGCGGCAGTTTCTGGAGCTAATCC
GGCACTGGCCTCGGCGGCGGCTCAAGCGGCGGCAGCTGCGGCTGCTGCCA
ATATTGCCATTGCTGCGGCTTCGGCGCCCGCAGCCGCGGGTGGAGCTCCA
AGTGTGGCCATGGGCGGTGCTCTAAGCTCTGATAAGCTGGAGCTAGCCAA
ACGATTGGCCTCCAAGATCAACAGCAGCAAGAACCTGGACACCAAGGGCA
GCGTGGTCACTGTGGAGCCCATGATCAAGGGACCGCATGTCACGGGAGCT
GCCGCGACCCTGCTGACCGCTCGCACGGTGGCCGAGCAGATGGCCGCCAA
GTTGAACAACAAACTGAACTATCAGCCCAAAGAGGATGAGGAAGGACTGG
GCCCGCTGGTGGGTGGCACAACCAACCCGTTTACCAAATACGAGGAGGAA
CTGGAGATTAACGATTTCCCGCAGCAAGCGCGATGGAAGGTCACGTCCAA
GGAGGCACTCGCTCAGATCTCTGAGTACTCGGAGGCAGGTCTCACCGTAC
GTGGCACATATGTGCCGCAGGGCAAGAATCCGCCGGATGGCGAGCGCAAA
CTCTACCTCGCCATCGAGAGCTGCAGTGAACTGGCCGTGCAGAAGGCCAA
GCGCGAGATCACGCGGCTAATCAAGGAGGAGCTGCTCAAGCTCAGCTCCG
CTCATCATGTCTTTAACAAGGGTCGCTACAAGGTGGTCTAGAAGCTTTCT
AGACCAT

BS17656.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-RA 3675 CG6227-PA 1..3675 17..3691 18375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-RA 4251 CG6227-RA 237..3913 16..3692 18385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15346098..15347334 310..1546 6185 100 Plus
X 23542271 X 15348534..15349683 2543..3692 5750 100 Plus
X 23542271 X 15347474..15348476 1545..2547 5015 100 Plus
X 23542271 X 15345487..15345763 33..309 1385 100 Plus
Blast to na_te.dros performed 2014-11-27 07:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10445..10581 2941..3074 129 58.3 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6029..6094 3102..3037 123 65.2 Minus

BS17656.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-14 09:29:38 Download gff for BS17656.complete
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 288..3962 17..3691 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:34 Download gff for BS17656.complete
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 238..3912 17..3691 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:09 Download gff for BS17656.complete
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 238..3912 17..3691 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:09 Download gff for BS17656.complete
Subject Subject Range Query Range Percent Splice Strand
X 15345406..15345422 17..33 100 -> Plus
X 15345488..15345763 34..309 100 -> Plus
X 15346098..15347334 310..1546 100 -> Plus
X 15347476..15348476 1547..2547 100 -> Plus
X 15348539..15349682 2548..3691 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:34 Download gff for BS17656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15239439..15239455 17..33 100 -> Plus
arm_X 15239521..15239796 34..309 100 -> Plus
arm_X 15240131..15241367 310..1546 100 -> Plus
arm_X 15241509..15242509 1547..2547 100 -> Plus
arm_X 15242572..15243715 2548..3691 100   Plus

BS17656.pep Sequence

Translation from 16 to 3690

> BS17656.pep
MSKSSGRDRDRERDRERERERDRERERDRDRERDNRHDSRSRDYDMGKSR
NGGGGGAGGGSRNMREDRKRGKDMISDRGKRDDKRRKCSRSKDYEKDNSP
HYRRLDKDRDRDRDRDRQREKEREREKEKEREKEKERERDKDRERDRQRE
KESDSRRAAAAAPLIIPLLSTSCSEEEVEEIDKEEQQRRLEQEMIKRRER
IERWRAERKRDTKAAVVAPSLVNSAKKWSLEDESEEDDSNPAPPLDSGKK
DAEPDSPPSKFHSIRKRFDDDVVESKFSPVKRPTFSKSFGKLGIGLATKA
EADIKKEPPPVDTKKEIKKKPEPVAAKMEIVEEPTVAAGEKTKKEPEQPH
VGAKSEPEVEDKPQPEAEPEDEIDPLDAYMQEVNNEMRRVNNFVNPPAKS
QGVVILTGVAKKKTTTLKKGEVIEQNMDSLEYSSEDELEDIRDTAVNLAM
KHRKELAKIDHSSVTYAPFRKNFYVEVPELTRMTAADVEKYRSDLEGIQV
KGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDL
IGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTRELCMQIG
KDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAA
NSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT
FPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLEL
LGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTI
IDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGR
AGKKGSAYTFITPEQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEA
EGKTVHTGGGFSGKGFKFDEQEFNAAKESKKLQKAALGLADSDDEEDIEQ
DIDQQIEQIFAAKRTVKDTSAAATAAAAAAAAAAAAAAAVSGANPALASA
AAQAAAAAAAANIAIAAASAPAAAGGAPSVAMGGALSSDKLELAKRLASK
INSSKNLDTKGSVVTVEPMIKGPHVTGAAATLLTARTVAEQMAAKLNNKL
NYQPKEDEEGLGPLVGGTTNPFTKYEEELEINDFPQQARWKVTSKEALAQ
ISEYSEAGLTVRGTYVPQGKNPPDGERKLYLAIESCSELAVQKAKREITR
LIKEELLKLSSAHHVFNKGRYKVV*

BS17656.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-PA 1224 CG6227-PA 1..1224 1..1224 6219 100 Plus
CG6418-PB 791 CG6418-PB 98..680 340..915 1041 38.1 Plus
CG7878-PA 703 CG7878-PA 230..687 468..918 914 41.5 Plus
Rm62-PH 575 CG10279-PH 90..549 459..917 883 41.2 Plus
Rm62-PD 575 CG10279-PD 90..549 459..917 883 41.2 Plus