Clone BS17657 Report

Search the DGRC for BS17657

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:57
Vector:pDNR-Dual
Associated Gene/Transcriptdalao-RA
Protein status:BS17657.pep: full length peptide match
Sequenced Size:2282

Clone Sequence Records

BS17657.3prime Sequence

852 bp (827 high quality bases) assembled on 2007-05-29

> BS17657.3prime
ATGGTCTAGAAAGCTTTTAGTCCGCCTCGTGCTTCTCCGCCTCTGGATGC
TTGCCAGGTGCTGTTGCCGCTGGCGGAGCTACTCCCCCAGCTACTGCGGC
CTCGCCCAGCGGTGCTCCTCCAGCTGGTCCAGGTGGTGCTCCTGGTCCCG
CTCCTGCCCCGGGCGTGGGATACACTCCGGCTCCGGGCGCCGCTGCTGCT
GCCGCTCCAGCTCCACCGCCTGGGGCCCCGGGTCCTCCACCGCTCGGCTC
GTGCAGGTGTCCTGGTGGCGGTTGTTGTTGTTGCTGCTGCTGTGGTGGCG
GTGGATTGCTTCCATGCTCCGGCGCATACGGATGCCCGGGATTGCCATTG
TGCTGCGGCGGCGGCGGACGCGGTGACATGTAGTGCGAGCCAGGTGGCGG
GCCATAGGACTGCTGATACGGCGAGAACGGTGCGTAGTAGGGCTGTGGCG
TGGGATGTCCGCCGTACTGGGGCTGGTAATAGGGTCGTGCTGGTCCACCG
GGTGGTCCAGGCGGCGGGCCATGTGGTGGTCCGCCGTAGTTAGCATAACC
CGTGTGCGGAGGTGGCGGCGGCAGACCGGGCATTCCCGGCGGCGGCTGAT
GCGGCCCCATGTGCGGTGGCATCAAGGAATGTCCGGGTGGCGGATGGCCG
GGATGTGGATGCATCTGCGGCATGCCGGGCGGTGGAGCTGGCCCGCCCTG
TTGCTGCGGCAGTGGCACCTGTTGTGGCACCGGCGGTGGCGTTGGTGTCG
TCGTCGTTGTTGTGGTCGCTGCAGTAGCTGCTCCGGCCGCTGGAGCCACC
TCANGCGGCGGTGTGGGTGTCGGCACCGGTGTGGGCACCTTGCCGGGCTG
GG

BS17657.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7055-PA 2250 dalao-RA 1415..2250 852..17 4161 99.8 Minus
CG7439-PB 3645 AGO2-RB 153..181 296..268 145 100 Minus
CG7439-PC 3654 AGO2-RC 162..190 296..268 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
dalao-RA 2668 CG7055-RA 1529..2364 852..17 4169 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9150837..9151672 852..17 4169 99.9 Minus
Blast to na_te.dros performed 2015-02-10 22:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6935 306..111 194 57.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6951 293..59 191 55.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6961 301..53 181 56.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6884 306..189 161 62.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6679..6935 416..168 147 54.1 Minus
roo 9092 roo DM_ROO 9092bp 1061..1170 367..258 143 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2430 334..271 139 72.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..7007 367..111 138 55.7 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 632..728 178..274 133 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2880 312..218 132 62.5 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3334 364..252 131 60.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2443..2504 305..245 127 69.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6981..7034 297..242 122 71.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1531..1581 318..268 120 70.6 Minus
roo 9092 roo DM_ROO 9092bp 1079..1163 334..253 120 63.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2505 303..111 119 54.9 Minus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 4204..4297 583..676 117 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2391 312..247 111 69.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6832..6923 359..274 111 65.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2432 374..272 110 62.9 Minus
roo 9092 roo DM_ROO 9092bp 1118..1157 792..753 110 75 Minus

BS17657.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:00 Download gff for BS17657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7055-PA 1415..2250 17..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:07:34 Download gff for BS17657.3prime
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 1529..2364 17..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:08 Download gff for BS17657.3prime
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 1529..2364 17..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:08 Download gff for BS17657.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9150837..9151672 17..852 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:07:34 Download gff for BS17657.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9044870..9045705 17..852 99   Minus

BS17657.5prime Sequence

855 bp (778 high quality bases) assembled on 2007-05-29

> BS17657.5prime
GAAGTTATCAGTCGACATGGCCCTGCCAAGCAACTACAAGCAGATAGCCG
TTGGCGGCCAGGGATCGGCCACACCACTCCAGGGCGGCGGCGGTGGCTCC
GGCGGCGGCAGCCGGTCGCGTTCATCCGGCGGCGGAGGTGGTGGCGATCG
CAACAAGGATCAGACGCCCATCTTCACGCACAGCAACTATGGGAATCCGG
CATTCACGCCACAGAAGGTAACCAAGTCGTCGAGCAGCAAGAACCAGAAC
GAATCAAGGCTACCCAAGCCACCAAAGCCGCCGGAGAAGCCCATTTTGCC
CTACATGCGGTATTCGAAACGCGTCTGGGATAGCGTCAAGGCGAAGCATC
CAGAGCTGAAGCTGTGGGAGCTGGGTAAGAAGATCGGTGCCATGTGGAAG
TTGCTGCCCGAGGATGAGAAGACGGAGTTCATTGACGAATACGAGGCGGA
GAAGCTGGAGTACGAGAAATCGCTAAAGGCCTACCACCAGACGCCCGCCT
ATCAGGCCTACATGTCGGCCAAGAGCAAGGTGAAGACCGACGTGGATATG
CATGAGACACCGTCACGCGGTGGCGGCAGTAAGTCGCAGCATGAGCGACG
CATCGACATTCAGCCGGCGGAGGACGAGGATGACCAGGACGAAGGGTATA
CGACCAAGCACTTGGCCTACGCCCGCTATCTGCACAACCATCGCCTGATT
AACGAGATATTCTCGGAGGCCGTTGTACCAGATGTGCGTTCAGTGGTGAC
CACCACGCGGATGCAGGTGCTCAAGCGGCAGGTCAGCTCGTTGACGATGC
ACCAGACCAAACTTGAGGCGGAACTGCAGCAGATGGAGGAGAAGTTCGAG
GCCAA

BS17657.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7055-PA 2250 dalao-RA 1..839 17..855 4195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
dalao-RA 2668 CG7055-RA 115..953 17..855 4195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9149423..9150261 17..855 4195 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:44:17 has no hits.

BS17657.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:05 Download gff for BS17657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7055-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:02:44 Download gff for BS17657.5prime
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 115..951 17..853 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:12:07 Download gff for BS17657.5prime
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 115..951 17..853 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:12:07 Download gff for BS17657.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9149423..9150259 17..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:02:44 Download gff for BS17657.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9043456..9044292 17..853 100   Plus

BS17657.complete Sequence

2282 bp assembled on 2008-08-15

GenBank Submission: KX805387

> BS17657.complete
GAAGTTATCAGTCGACATGGCCCTGCCAAGCAACTACAAGCAGATAGCCG
TTGGCGGCCAGGGATCGGCCACACCACTCCAGGGCGGCGGCGGTGGCTCC
GGCGGCGGCAGCCGGTCGCGTTCATCCGGCGGCGGAGGTGGTGGCGATCG
CAACAAGGATCAGACGCCCATCTTCACGCACAGCAACTATGGGAATCCGG
CATTCACGCCACAGAAGGTAACCAAGTCGTCGAGCAGCAAGAACCAGAAC
GAATCAAGGCTACCCAAGCCACCAAAGCCGCCGGAGAAGCCCATTTTGCC
CTACATGCGGTATTCGAAACGCGTCTGGGATAGCGTCAAGGCGAAGCATC
CAGAGCTGAAGCTGTGGGAGCTGGGTAAGAAGATCGGTGCCATGTGGAAG
TTGCTGCCCGAGGATGAGAAGACGGAGTTCATTGACGAATACGAGGCGGA
GAAGCTGGAGTACGAGAAATCGCTAAAGGCCTACCACCAGACGCCCGCCT
ATCAGGCCTACATGTCGGCCAAGAGCAAGGTGAAGACCGACGTGGATATG
CATGAGACACCGTCACGCGGTGGCGGCAGTAAGTCGCAGCATGAGCGACG
CATCGACATTCAGCCGGCGGAGGACGAGGATGACCAGGACGAAGGGTATA
CGACCAAGCACTTGGCCTACGCCCGCTATCTGCACAACCATCGCCTGATT
AACGAGATATTCTCGGAGGCCGTTGTACCAGATGTGCGTTCAGTGGTGAC
CACCACGCGGATGCAGGTGCTCAAGCGGCAGGTCAGCTCGTTGACGATGC
ACCAGACCAAACTTGAGGCGGAACTGCAGCAGATGGAGGAGAAGTTCGAG
GCCAAGAAGCAGCGCATGGTGGAGTCCAGCGAAGCCTTCCAGGAGGAGCT
AAAGCGCCACTGCAAGCCGGCGGTCGACGAGGAAACTTTCCAGAAGATGG
TGCTTCGCATGTACGAGGACATCAAGCGCGATCGCCAGCGATTGGATGAA
CCGAATGCGAATGCGAATAGCGCAGCGAATCCTGCTGCAGCTGCCGCTAC
AGCTGCCGCCGCTCCAGTGACGAGGAGCGAGGAGGCAGTGAAGCCGCCAA
CGCAGCCAGGTCAGCCCGCTGCCACACCCGCTGGCCAAGAGCCGGCGTCG
GCGGTACCAGCGCCAGCAGCTCCGCCCAAGGAGACACCGCCGGCTGTGAA
GCCCGCTACACTCAATCCCACACCGAGTTCAACGCCTACGCCGGCGCCAG
CGGTGCACGTGCACGAAACTGCCAGCAAAACGGATCCCGAGCCCATGGAC
ATTGAGCCACCGCCGAAGCCATCGGTTCCGCCGCCACCCATCAAGCCAGA
GAAGCTGGAGATGGCCGCTGCCCTGCCTCCGCAGTCAACGCTAGTCGAGC
CACCCAAAACGGAACCCGCCAAAGTGGTGGCCCAGCCCGGCAAGGTGCCC
ACACCGGTGCCGACACCCACACCGCCGCCTGAGGTGGCTCCAGCGGCCGG
AGCAGCTACTGCAGCGACCACAACAACGACGACGACACCAACGCCACCGC
CGGTGCCACAACAGGTGCCACTGCCGCAGCAACAGGGCGGGCCAGCTCCA
CCGCCCGGCATGCCGCAGATGCATCCACATCCCGGCCATCCGCCACCCGG
ACATTCCTTGATGCCACCGCACATGGGGCCGCATCAGCCGCCGCCGGGAA
TGCCCGGTCTGCCGCCGCCACCTCCGCACACGGGTTATGCTAACTACGGC
GGACCACCACATGGCCCGCCGCCTGGACCACCCGGTGGACCAGCACGACC
CTATTACCAGCCCCAGTACGGCGGACATCCCACGCCACAGCCCTACTACG
CACCGTTCTCGCCGTATCAGCAGTCCTATGGCCCGCCACCTGGCTCGCAC
TACATGTCACCGCGTCCGCCGCCGCCGCAGCACAATGGCAATCCCGGGCA
TCCGTATGCGCCGGAGCATGGAAGCAATCCACCGCCACCACAGCAGCAGC
AACAACAACAACCGCCACCAGGACACCTGCACGAGCCGAGCGGTGGAGGA
CCCGGGGCCCCAGGCGGTGGAGCTGGAGCGGCAGCAGCAGCGGCGCCCGG
AGCCGGAGTGTATCCCACGCCCGGGGCAGGAGCGGGACCAGGAGCACCAC
CTGGACCAGCTGGAGGAGCACCGCTGGGCGAGGCCGCAGTAGCTGGGGGA
GTAGCTCCGCCAGCGGCAACAGCACCTGGCAAGCATCCAGAGGCGGAGAA
GCACGAGGCGGACTAAAAGCTTTCTAGACCAT

BS17657.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
dalao-RA 2250 CG7055-PA 1..2250 17..2266 11250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
dalao-RA 2668 CG7055-RA 115..2364 17..2266 11250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9149423..9151672 17..2266 11250 100 Plus
Blast to na_te.dros performed 2014-11-27 16:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6935 1977..2172 194 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6951 1990..2224 191 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6961 1982..2230 181 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6884 1977..2094 161 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6679..6935 1867..2115 147 54.1 Plus
roo 9092 roo DM_ROO 9092bp 1061..1170 1916..2025 143 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2430 1949..2012 139 72.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..7007 1916..2172 138 55.7 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 632..728 2105..2009 133 63.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2880 1971..2065 132 62.5 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3334 1919..2031 131 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2443..2504 1978..2038 127 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6981..7034 1986..2041 122 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1531..1581 1965..2015 120 70.6 Plus
roo 9092 roo DM_ROO 9092bp 1079..1163 1949..2030 120 63.5 Plus

BS17657.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:52:19 Download gff for BS17657.complete
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 99..2348 17..2266 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:29 Download gff for BS17657.complete
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 115..2362 17..2264 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:52 Download gff for BS17657.complete
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 99..2346 17..2264 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:14 Download gff for BS17657.complete
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 115..2362 17..2264 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:14 Download gff for BS17657.complete
Subject Subject Range Query Range Percent Splice Strand
X 9149423..9151670 17..2264 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:29 Download gff for BS17657.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9043456..9045703 17..2264 100   Plus

BS17657.pep Sequence

Translation from 16 to 2265

> BS17657.pep
MALPSNYKQIAVGGQGSATPLQGGGGGSGGGSRSRSSGGGGGGDRNKDQT
PIFTHSNYGNPAFTPQKVTKSSSSKNQNESRLPKPPKPPEKPILPYMRYS
KRVWDSVKAKHPELKLWELGKKIGAMWKLLPEDEKTEFIDEYEAEKLEYE
KSLKAYHQTPAYQAYMSAKSKVKTDVDMHETPSRGGGSKSQHERRIDIQP
AEDEDDQDEGYTTKHLAYARYLHNHRLINEIFSEAVVPDVRSVVTTTRMQ
VLKRQVSSLTMHQTKLEAELQQMEEKFEAKKQRMVESSEAFQEELKRHCK
PAVDEETFQKMVLRMYEDIKRDRQRLDEPNANANSAANPAAAAATAAAAP
VTRSEEAVKPPTQPGQPAATPAGQEPASAVPAPAAPPKETPPAVKPATLN
PTPSSTPTPAPAVHVHETASKTDPEPMDIEPPPKPSVPPPPIKPEKLEMA
AALPPQSTLVEPPKTEPAKVVAQPGKVPTPVPTPTPPPEVAPAAGAATAA
TTTTTTTPTPPPVPQQVPLPQQQGGPAPPPGMPQMHPHPGHPPPGHSLMP
PHMGPHQPPPGMPGLPPPPPHTGYANYGGPPHGPPPGPPGGPARPYYQPQ
YGGHPTPQPYYAPFSPYQQSYGPPPGSHYMSPRPPPPQHNGNPGHPYAPE
HGSNPPPPQQQQQQQPPPGHLHEPSGGGPGAPGGGAGAAAAAAPGAGVYP
TPGAGAGPGAPPGPAGGAPLGEAAVAGGVAPPAATAPGKHPEAEKHEAD*

BS17657.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
dalao-PA 749 CG7055-PA 1..749 1..749 4101 100 Plus
CG15021-PA 420 CG15021-PA 35..362 359..742 409 34.1 Plus
CG15021-PA 420 CG15021-PA 59..408 339..727 392 31.7 Plus
osa-PE 2555 CG7467-PE 1..461 315..741 342 28.3 Plus
osa-PC 2556 CG7467-PC 1..461 315..741 342 28.3 Plus
osa-PF 2559 CG7467-PF 1..461 315..741 342 28.3 Plus
CG15021-PA 420 CG15021-PA 57..275 488..744 264 34.7 Plus
osa-PE 2555 CG7467-PE 1270..1606 360..689 245 29.7 Plus
osa-PC 2556 CG7467-PC 1271..1607 360..689 245 29.7 Plus
osa-PE 2555 CG7467-PE 1158..1576 364..747 242 27.7 Plus
osa-PC 2556 CG7467-PC 1159..1577 364..747 242 27.7 Plus
osa-PE 2555 CG7467-PE 406..830 363..737 239 26 Plus
osa-PC 2556 CG7467-PC 406..830 363..737 239 26 Plus
osa-PE 2555 CG7467-PE 514..929 338..748 225 25.6 Plus
osa-PC 2556 CG7467-PC 514..929 338..748 225 25.6 Plus
CG15021-PA 420 CG15021-PA 203..418 361..596 211 30.7 Plus
osa-PE 2555 CG7467-PE 1119..1422 491..747 197 27.4 Plus
osa-PC 2556 CG7467-PC 1120..1423 491..747 197 27.4 Plus
osa-PE 2555 CG7467-PE 1355..1607 361..594 172 28.4 Plus
osa-PC 2556 CG7467-PC 1356..1608 361..594 172 28.4 Plus