Clone Sequence Records
BS17658.3prime Sequence
849 bp (848 high quality bases) assembled on 2007-05-29
> BS17658.3prime
ATGGTCTAGAAAGCTTTCAAAGATTCACCACATTCTTGAGATCCGGCGGC
AGCAAGCCCTTCATGCACTCAATCTGGGCGCGTATCTGCTGCTGAGTTGA
GCCATTGTTGCCCTCCAGCTGCGTGGCTTTGTCGCCATAGAGATTCAGTT
TTTGCTTGAGCTTGAGTATCATATCGATGATCTCCACCTCCTGCTTGTCG
TGCGCCCAGTGCTCGAGATTCGCCACGGATAGCGCCTGCAGCTGTAGATC
CTGCAGCGTTAGCTGCAGCTCCCGATGACGTGCACCGTACCAGCCGCGAA
AATTGGGCGATCGAAAGAAGCGTCTGTACAGGCCCTTCCAGTCGCCCTTC
AGCGGCGACGTTAGCTGCGGCCCAGCGGTTTCCAGCGTGCCCAGAAAGTC
ATCCAGCTTAAAGCTGTTGGCATTCGGCGCCGACTTAAACGGACTGATGT
CCTTTTGCAGCGGCATCAGTGATGCCATATACCGTTCCAGTGGTATCATA
AAGCTTTGCGTCAGCTCGAGCAGATGGCGTCGTATCAGTGCGGTTTGCAC
ATGCTCCGGCCGCTTGGTCTTCATGCCCAGCAGCACCTTTTTGATCAGCG
CCTTGTCCTTTTTCAGGTACGGCCTATATTTACTGTGCAGGCCCGCGGAC
GAGGCATCGCCCGAGCCATTGCTGGAACTGGAGCTGCCATTGAGATTGGT
GTTCGATTTCAGTGCTATACGGCCACCGAGTTCCGTTGAACTGGAAAATG
ATGTGGCCGATGCGATGTTCCTTGCGTGTTTTTGGCCCAGCAGCAGATGC
TGTTGCTGCTGCATGTTCTTCTGGTTGTCCACCAGTCGCAGCATGTGCG
BS17658.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-PA | 1905 | CG3309-RA | 1073..1905 | 849..17 | 4165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-RA | 2614 | CG3309-RA | 1151..1983 | 849..17 | 4165 | 100 | Minus |
| CG3309-RB | 2611 | CG3309-RB | 1151..1980 | 849..17 | 4110 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5327306..5328112 | 17..823 | 4035 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 05:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6861 | 827..749 | 127 | 68.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6846 | 827..749 | 116 | 66.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1145 | 848..793 | 109 | 66.1 | Minus |
BS17658.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:10 Download gff for
BS17658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-PA | 1073..1905 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:47:55 Download gff for
BS17658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 1154..1986 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:26 Download gff for
BS17658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 1151..1983 | 17..849 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:26 Download gff for
BS17658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5327306..5328109 | 17..820 | 100 | <- | Plus |
| X | 5328169..5328197 | 821..849 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:47:55 Download gff for
BS17658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5221339..5222142 | 17..820 | 100 | <- | Plus |
| arm_X | 5222202..5222230 | 821..849 | 100 | | Plus |
BS17658.5prime Sequence
871 bp (712 high quality bases) assembled on 2007-05-29
> BS17658.5prime
GAAGTTATCAGTCGACATGAGCGCGGATGCGAGAATCAAGCAGATGGCGC
CATCGCTGGACACCACCGAACGGGAGAGGGAGCACCAGAACGTGGATGCC
ACCAACTCGAACTCGGAGCCCAGTGCCAGCGATTGGGTGAACTTCTCGCA
ATGGATGCACTGCTTCTGCGTGGTCACCTTCGATCTAAATCTTGGGCAGG
CGCTGGAGCACGTCTATCCGCCGGCTTTCATGCCCAGCGACCAGGAGGTT
AGCAACATTTGCTACATGGCCTTCCCGGACTCAAATTCCGGCTGCATGGG
CGACACCAAGTTCCACATGCGATTGCGCTGCACAACGCGTCGGGATTCCT
TGCCGGGCTACAATGCGGAATGCTCGCCGGCGCTGCGACAGGATGGCTCC
CACTACTGGGGCTTCGTCTACTTTCGCCAGAAGCGGGACGCGAATCTGCC
GCGTGGTTACTTCCAGAAGAGCTTTATAATCATTACACGACTGCCGTTCT
TCAATCTGTACTACGACATACTCTCCCAGCTGGCGCCGCGCTACTTTGAG
GAGGGCACCGACGTCCTGCGTCTGGCCAGCGAGCAAATTAATCGCCAGTG
GCCCGGCCTGCGAGTGGGTAAGCCGCTCCAGCTGCCTCTGCTGGATTGCA
GCTATCAGATCTGCATACCGCGGACCAGCAGCAGTCGAAAGTCGACGGCC
GATGGAGGCATCGCAGGTGGTGCGGTGGAATCGCCACCAGCCATGGCTGC
TTGCCCGGCAGCCAAAGTGCTGGCCTCCGTTAATGAAATCGAACTCTTCC
GCTCCCTGGACTTTGTCATGGAGCAACTGTACACGCTGTGGGAGCTGGTC
ATCACCGCCGAGCCCATTGTT
BS17658.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-PA | 1905 | CG3309-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-RB | 2611 | CG3309-RB | 79..933 | 17..871 | 4275 | 100 | Plus |
| CG3309-RA | 2614 | CG3309-RA | 79..933 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5328415..5329269 | 871..17 | 4275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:01:53 has no hits.
BS17658.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:15 Download gff for
BS17658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:09:00 Download gff for
BS17658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 78..936 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:59 Download gff for
BS17658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 75..933 | 9..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:59 Download gff for
BS17658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5328415..5329273 | 9..871 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:09:00 Download gff for
BS17658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5222448..5223306 | 9..871 | 99 | | Minus |
BS17658.complete Sequence
1937 bp assembled on 2009-12-07
GenBank Submission: KX803523
> BS17658.complete
GAAGTTATCAGTCGACATGAGCGCGGATGCGAGAATCAAGCAGATGGCGC
CATCGCTGGACACCACCGAACGGGAGAGGGAGCACCAGAACGTGGATGCC
ACCAACTCGAACTCGGAGCCCAGTGCCAGCGATTGGGTGAACTTCTCGCA
ATGGATGCACTGCTTCTGCGTGGTCACCTTCGATCTAAATCTTGGGCAGG
CGCTGGAGCACGTCTATCCGCCGGCTTTCATGCCCAGCGACCAGGAGGTT
AGCAACATTTGCTACATGGCCTTCCCGGACTCAAATTCCGGCTGCATGGG
CGACACCAAGTTCCACATGCGATTGCGCTGCACAACGCGTCGGGATTCCT
TGCCGGGCTACAATGCGGAATGCTCGCCGGCGCTGCGACAGGATGGCTCC
CACTACTGGGGCTTCGTCTACTTTCGCCAGAAGCGGGACGCGAATCTGCC
GCGTGGTTACTTCCAGAAGAGCTTTATAATCATTACACGACTGCCGTTCT
TCAATCTGTACTACGACATACTCTCCCAGCTGGCGCCGCGCTACTTTGAG
GAGGGCACCGACGTCCTGCGTCTGGCCAGCGAGCAAATTAATCGCCAGTG
GCCCGGCCTGCGAGTGGGTAAGCCGCTCCAGCTGCCTCTGCTGGATTGCA
GCTATCAGATCTGCATACCGCGGACCAGCAGCAGTCGAAAGTCGACGGCC
GATGGAGGCATCGCAGGTGGTGCGGTGGAATCGCCACCAGCCATGGCTGC
TTGCCCGGCAGCCAAAGTGCTGGCCTCCGTTAATGAAATCGAACTCTTCC
GCTCCCTGGACTTTGTCATGGAGCAACTGTACACGCTGTGGGAGCTGGTC
ATCACCGCCGAGCCCATTGTTGTCGTTGGCACCTCACCCGCCGACTGCTC
CCACATGGTGCAGACCCTTCTGGCCATGATTGCTCCGCTGGAGTATTGCG
CCGAGGCGCGTCCCTACTTCACCATTCACGACAGCGAATTTCGCGAATTC
ACACAAGAGTGCAGCAGCAAGACCACACTGCCCGCCTGCATTTTGGGCGT
CACGAATCCGTTCTTTGTGAAGCTCCTGAAGGATTGGCCGCACATGCTGC
GACTGGTGGACAACCAGAAGAACATGCAGCAGCAACAGCATCTGCTGCTG
GGCCAAAAACACGCAAGGAACATCGCATCGGCCACATCATTTTCCAGTTC
AACGGAACTCGGTGGCCGTATAGCACTGAAATCGAACACCAATCTCAATG
GCAGCTCCAGTTCCAGCAATGGCTCGGGCGATGCCTCGTCCGCGGGCCTG
CACAGTAAATATAGGCCGTACCTGAAAAAGGACAAGGCGCTGATCAAAAA
GGTGCTGCTGGGCATGAAGACCAAGCGGCCGGAGCATGTGCAAACCGCAC
TGATACGACGCCATCTGCTCGAGCTGACGCAAAGCTTTATGATACCACTG
GAACGGTATATGGCATCACTGATGCCGCTGCAAAAGGACATCAGTCCGTT
TAAGTCGGCGCCGAATGCCAACAGCTTTAAGCTGGATGACTTTCTGGGCA
CGCTGGAAACCGCTGGGCCGCAGCTAACGTCGCCGCTGAAGGGCGACTGG
AAGGGCCTGTACAGACGCTTCTTTCGATCGCCCAATTTTCGCGGCTGGTA
CGGTGCACGTCATCGGGAGCTGCAGCTAACGCTGCAGGATCTACAGCTGC
AGGCGCTATCCGTGGCGAATCTCGAGCACTGGGCGCACGACAAGCAGGAG
GTGGAGATCATCGATATGATACTCAAGCTCAAGCAAAAACTGAATCTCTA
TGGCGACAAAGCCACGCAGCTGGAGGGCAACAATGGCTCAACTCAGCAGC
AGATACGCGCCCAGATTGAGTGCATGAAGGGCTTGCTGCCGCCGGATCTC
AAGAATGTGGTGAATCTTTGAAAGCTTTCTAGACCAT
BS17658.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-RA | 1905 | CG3309-PA | 1..1905 | 17..1921 | 9525 | 100 | Plus |
| CG3309-RB | 1902 | CG3309-PB | 1..1902 | 17..1921 | 9445 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-RA | 2614 | CG3309-RA | 79..1983 | 17..1921 | 9525 | 100 | Plus |
| CG3309-RB | 2611 | CG3309-RB | 79..1980 | 17..1921 | 9445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5328169..5329269 | 1117..17 | 5505 | 100 | Minus |
| X | 23542271 | X | 5327306..5328112 | 1921..1115 | 4035 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6861 | 1087..1189 | 132 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6846 | 1087..1189 | 121 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1145 | 1087..1145 | 115 | 66.1 | Plus |
BS17658.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:33 Download gff for
BS17658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 68..1971 | 17..1920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:09 Download gff for
BS17658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 82..1985 | 17..1920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:22 Download gff for
BS17658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 68..1971 | 17..1920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:35 Download gff for
BS17658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 79..1982 | 17..1920 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:35 Download gff for
BS17658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5327307..5328109 | 1118..1920 | 100 | <- | Minus |
| X | 5328169..5329269 | 17..1117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:09 Download gff for
BS17658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5221340..5222142 | 1118..1920 | 100 | <- | Minus |
| arm_X | 5222202..5223302 | 17..1117 | 100 | | Minus |
BS17658.pep Sequence
Translation from 16 to 1920
> BS17658.pep
MSADARIKQMAPSLDTTEREREHQNVDATNSNSEPSASDWVNFSQWMHCF
CVVTFDLNLGQALEHVYPPAFMPSDQEVSNICYMAFPDSNSGCMGDTKFH
MRLRCTTRRDSLPGYNAECSPALRQDGSHYWGFVYFRQKRDANLPRGYFQ
KSFIIITRLPFFNLYYDILSQLAPRYFEEGTDVLRLASEQINRQWPGLRV
GKPLQLPLLDCSYQICIPRTSSSRKSTADGGIAGGAVESPPAMAACPAAK
VLASVNEIELFRSLDFVMEQLYTLWELVITAEPIVVVGTSPADCSHMVQT
LLAMIAPLEYCAEARPYFTIHDSEFREFTQECSSKTTLPACILGVTNPFF
VKLLKDWPHMLRLVDNQKNMQQQQHLLLGQKHARNIASATSFSSSTELGG
RIALKSNTNLNGSSSSSNGSGDASSAGLHSKYRPYLKKDKALIKKVLLGM
KTKRPEHVQTALIRRHLLELTQSFMIPLERYMASLMPLQKDISPFKSAPN
ANSFKLDDFLGTLETAGPQLTSPLKGDWKGLYRRFFRSPNFRGWYGARHR
ELQLTLQDLQLQALSVANLEHWAHDKQEVEIIDMILKLKQKLNLYGDKAT
QLEGNNGSTQQQIRAQIECMKGLLPPDLKNVVNL*
BS17658.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-PA | 634 | CG3309-PA | 1..634 | 1..634 | 3331 | 100 | Plus |
| CG3309-PB | 633 | CG3309-PB | 1..633 | 1..634 | 3314 | 99.8 | Plus |
