Clone Sequence Records
BS17660.complete Sequence
1181 bp assembled on 2009-12-07
GenBank Submission: KX801746
> BS17660.complete
GAAGTTATCAGTCGACATGACCTCCATTCTGGACATGAAGGCCGGTCCGC
CCGACTACTGGGCGGAGATCAGCAACTTCTTTCTGCCGCTGAAATACCTG
ATCACCAACGACCGCTTCGATTCGATGGTGCGGGACATAGACCTCTATTA
CCTGATCAACGGGGTCTTTTGGATATTCGTGGCGTTGTCTTGCGGCTACT
ACGCCTTCCAGCGGCTCTTCCAGTTCTTTCTGAAGTCGTCGAGCATGAAG
CACTTTCAGCGGAGGCTGTTCGCCCGCGTCATTTGGAACATCGCCTTCTA
TGCGGCCAGCTGCCTGTTCCTGCACTTCTACAACGAGTTCATGATCCTGC
CGCAGCTGATGAAGAACCAAGGACGCTACTCGCTCTTCTACTCCTCGGAG
AACCTGATCTTCTATCGATCTCATCAGGCGGAAAAGTTTCAGTTCTACTC
GATCTTCATTATCACGTTCTACCTGCATGGGGCGTGGTTGGACTTCAAGG
ACGCTGACTTCCTGGAGGTGGGCTCCAAGGGACTCTACCTGCTGTCCCTC
GTCGCCATCGATGTTTACAGGTACGAAAACTACTTTGTGGGCCTGAATCT
AACGGTGGGTCTGTACAGCATACTCACCGAGGTGCTAGCCCTGTTGGTCC
TGCCCAGCACCAATTCACACCGGATCATCTACCAGGTTTTCCTCGGTCTG
CGCATCATGGTGTGGGCGTATGTGTTTGTCAACCTACTGCCCTTTAAGTA
CTTCATACCCACGCTGTTCGCCAAGAACTTTAAGCTTTCCCTGAATGTGC
CCATTTGGTTGTGGTACGGCCTCTCCATTTGGAACTCGCCGGTGCTGCAA
TACTTCTACCATCAGATATATCACACAGCGCCGTCGGATTGTTCGGGCGA
GGGATCGGCGGCTAAGTGCATCCTGGTCAAGGACACCAGTGAGTTCCGGC
ACTACAAGACACTGAAGAAGGCCTATTTGGAGGTAAAGCTGGCACACATT
AGAACCACGTCCAATTCGCTGCCCTCCGAAACCAGTTCGGCCTCGGCCAA
AACCTTTCAGGCCATAAAATGCGTCATGATGCTTAAGCGCAAATTGAAGC
GAATTCGCGAGGGACGTGGCCATGAGCCGGAGGATGACAACGATGACCAG
GCCATTGATACCTAAAAGCTTTCTAGACCAT
BS17660.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-RC | 1149 | CG1636-PC | 1..1149 | 17..1165 | 5745 | 100 | Plus |
CG1636-RA | 1149 | CG1636-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
CG1636-RB | 1101 | CG1636-PB | 1..554 | 17..570 | 2770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-RC | 1343 | CG1636-RC | 136..1285 | 16..1165 | 5750 | 100 | Plus |
CG1636-RA | 2124 | CG1636-RA | 136..1285 | 16..1165 | 5750 | 100 | Plus |
CG1636-RB | 2325 | CG1636-RB | 136..690 | 16..570 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8274707..8275209 | 569..1071 | 2515 | 100 | Plus |
X | 23542271 | X | 8274277..8274627 | 221..571 | 1755 | 100 | Plus |
X | 23542271 | X | 8273547..8273754 | 16..223 | 1040 | 100 | Plus |
X | 23542271 | X | 8275268..8275362 | 1071..1165 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:15:25 has no hits.
BS17660.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:12 Download gff for
BS17660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 1..1149 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 10:00:51 Download gff for
BS17660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 132..1278 | 17..1163 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:52 Download gff for
BS17660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 137..1283 | 17..1163 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:12 Download gff for
BS17660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 126..1290 | 10..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:15 Download gff for
BS17660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 137..1283 | 17..1163 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:15 Download gff for
BS17660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8273548..8273754 | 17..223 | 100 | -> | Plus |
X | 8274280..8274626 | 224..570 | 100 | -> | Plus |
X | 8274709..8275208 | 571..1070 | 100 | -> | Plus |
X | 8275268..8275360 | 1071..1163 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:52 Download gff for
BS17660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8167581..8167787 | 17..223 | 100 | -> | Plus |
arm_X | 8168313..8168659 | 224..570 | 100 | -> | Plus |
arm_X | 8168742..8169241 | 571..1070 | 100 | -> | Plus |
arm_X | 8169301..8169393 | 1071..1163 | 100 | | Plus |
BS17660.3prime Sequence
862 bp (775 high quality bases) assembled on 2007-05-29
> BS17660.3prime
ATGGTCTAGAAAGCTTTTAGGTATCAATGGCCTGGTCATCGTTGTCATCC
TCCGGCTCATGGCCACGTCCCTCGCGAATTCGCTTCAATTTGCGCTTAAG
CATCATGACGCATTTTATGGCCTGAAAGGTTTTGGCCGAGGCCGAACTGG
TTTCGGAGGGCAGCGAATTGGACGTGGTTCTAATGTGTGCCAGCTTTACC
TCCAAATAGGCCTTCTTCAGTGTCTTGTAGTGCCGGAACTCACTGGTGTC
CTTGACCAGGATGCACTTAGCCGCCGATCCCTCGCCCGAACAATCCGACG
GCGCTGTGTGATATATCTGATGGTAGAAGTATTGCAGCACCGGCGAGTTC
CAAATGGAGAGGCCGTACCACAACCAAATGGGCACATTCAGGGAAAGCTT
AAAGTTCTTGGCGAACAGCGTGGGTATGAAGTACTTAAAGGGCAGTAGGT
TGACAAACACATACGCCCACACCATGATGCGCAGACCGAGGAAAACCTGG
TAGATGATCCGGTGTGAATTGGTGCTGGGCAGGACCAACAGGGCTAGCAC
CTCGGTGAGTATGCTGTACAGACCCACCGTTAGATTCAGGCCCACAAAGT
AGTTTTCGTACCTGTAAACATCGATGGCGACGAGGGACAGCAGGTAGAGT
CCCTTGGAGCCCACCTCCAGGAAGTCAGCGTCCTTGAAGTCCAACCACGC
CCCATGCAGGTAGAACGTGATAATGAAGATCGAGTAGAACTGAAACTTTT
CCGCCTGATGAGATCGATAGAAGATCAGGTTCTCCGAGGAGTAGAAGAGC
GAGTAGCGTCCTTGGTTCTTCATCAGCTGCGGCAGGATCATGAACTCGTT
GTAGAAGTGCAG
BS17660.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-PA | 1149 | CG1636-RA | 304..1149 | 862..17 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-RC | 1343 | CG1636-RC | 440..1285 | 862..17 | 4230 | 100 | Minus |
CG1636-RA | 2124 | CG1636-RA | 440..1285 | 862..17 | 4230 | 100 | Minus |
CG1636-RB | 2325 | CG1636-RB | 686..1237 | 568..17 | 2760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8274707..8275209 | 613..111 | 2515 | 100 | Minus |
X | 23542271 | X | 8274376..8274627 | 862..611 | 1260 | 100 | Minus |
X | 23542271 | X | 8275268..8275362 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:10:10 has no hits.
BS17660.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:20 Download gff for
BS17660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-PA | 304..1149 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:17 Download gff for
BS17660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 440..1295 | 7..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:03 Download gff for
BS17660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 440..1295 | 7..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:03 Download gff for
BS17660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8274376..8274626 | 612..862 | 100 | -> | Minus |
X | 8274709..8275208 | 112..611 | 100 | -> | Minus |
X | 8275268..8275372 | 7..111 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:17 Download gff for
BS17660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8168409..8168659 | 612..862 | 100 | -> | Minus |
arm_X | 8168742..8169241 | 112..611 | 100 | -> | Minus |
arm_X | 8169301..8169405 | 7..111 | 96 | | Minus |
BS17660.5prime Sequence
877 bp (792 high quality bases) assembled on 2007-05-29
> BS17660.5prime
GAAGTTATCAGTCGACATGACCTCCATTCTGGACATGAAGGCCGGTCCGC
CCGACTACTGGGCGGAGATCAGCAACTTCTTTCTGCCGCTGAAATACCTG
ATCACCAACGACCGCTTCGATTCGATGGTGCGGGACATAGACCTCTATTA
CCTGATCAACGGGGTCTTTTGGATATTCGTGGCGTTGTCTTGCGGCTACT
ACGCCTTCCAGCGGCTCTTCCAGTTCTTTCTGAAGTCGTCGAGCATGAAG
CACTTTCAGCGGAGGCTGTTCGCCCGCGTCATTTGGAACATCGCCTTCTA
TGCGGCCAGCTGCCTGTTCCTGCACTTCTACAACGAGTTCATGATCCTGC
CGCAGCTGATGAAGAACCAAGGACGCTACTCGCTCTTCTACTCCTCGGAG
AACCTGATCTTCTATCGATCTCATCAGGCGGAAAAGTTTCAGTTCTACTC
GATCTTCATTATCACGTTCTACCTGCATGGGGCGTGGTTGGACTTCAAGG
ACGCTGACTTCCTGGAGGTGGGCTCCAAGGGACTCTACCTGCTGTCCCTC
GTCGCCATCGATGTTTACAGGTACGAAAACTACTTTGTGGGCCTGAATCT
AACGGTGGGTCTGTACAGCATACTCACCGAGGTGCTAGCCCTGTTGGTCC
TGCCCAGCACCAATTCACACCGGATCATCTACCAGGTTTTCCTCGGTCTG
CGCATCATGGTGTGGGCGTATGTGTTTGTCAACCTACTGCCCTTTAAGTA
CTTCATACCCACGCTGTTCGCCAAGAACTTTAAGCTTTCCCTGAATGTGC
CCATTTGGTTGTGGTACGGCCTCTCCATTTGGAACTCGCCGGTGCTGCAA
TACTTCTACCATCAGATATATCACACA
BS17660.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-PA | 1149 | CG1636-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-RC | 1343 | CG1636-RC | 136..997 | 16..877 | 4310 | 100 | Plus |
CG1636-RA | 2124 | CG1636-RA | 136..997 | 16..877 | 4310 | 100 | Plus |
CG1636-RB | 2325 | CG1636-RB | 136..690 | 16..570 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8274277..8274627 | 221..571 | 1755 | 100 | Plus |
X | 23542271 | X | 8274707..8275015 | 569..877 | 1545 | 100 | Plus |
X | 23542271 | X | 8273547..8273754 | 16..223 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:57:30 has no hits.
BS17660.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:25 Download gff for
BS17660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:55:52 Download gff for
BS17660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 131..996 | 10..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:15 Download gff for
BS17660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 131..996 | 10..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:15 Download gff for
BS17660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8273542..8273754 | 10..223 | 98 | -> | Plus |
X | 8274280..8274626 | 224..570 | 100 | -> | Plus |
X | 8274709..8275014 | 571..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:55:52 Download gff for
BS17660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8167575..8167787 | 10..223 | 98 | -> | Plus |
arm_X | 8168313..8168659 | 224..570 | 100 | -> | Plus |
arm_X | 8168742..8169047 | 571..876 | 100 | | Plus |
BS17660.pep Sequence
Translation from 16 to 1164
> BS17660.pep
MTSILDMKAGPPDYWAEISNFFLPLKYLITNDRFDSMVRDIDLYYLINGV
FWIFVALSCGYYAFQRLFQFFLKSSSMKHFQRRLFARVIWNIAFYAASCL
FLHFYNEFMILPQLMKNQGRYSLFYSSENLIFYRSHQAEKFQFYSIFIIT
FYLHGAWLDFKDADFLEVGSKGLYLLSLVAIDVYRYENYFVGLNLTVGLY
SILTEVLALLVLPSTNSHRIIYQVFLGLRIMVWAYVFVNLLPFKYFIPTL
FAKNFKLSLNVPIWLWYGLSIWNSPVLQYFYHQIYHTAPSDCSGEGSAAK
CILVKDTSEFRHYKTLKKAYLEVKLAHIRTTSNSLPSETSSASAKTFQAI
KCVMMLKRKLKRIREGRGHEPEDDNDDQAIDT*
BS17660.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-PC | 382 | CG1636-PC | 1..382 | 1..382 | 2017 | 100 | Plus |
CG1636-PA | 382 | CG1636-PA | 1..382 | 1..382 | 2017 | 100 | Plus |
CG1636-PB | 366 | CG1636-PB | 1..366 | 1..382 | 1904 | 95.8 | Plus |