Clone BS17660 Report

Search the DGRC for BS17660

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG1636-RA
Protein status:BS17660.pep: full length peptide match
Sequenced Size:1181

Clone Sequence Records

BS17660.complete Sequence

1181 bp assembled on 2009-12-07

GenBank Submission: KX801746

> BS17660.complete
GAAGTTATCAGTCGACATGACCTCCATTCTGGACATGAAGGCCGGTCCGC
CCGACTACTGGGCGGAGATCAGCAACTTCTTTCTGCCGCTGAAATACCTG
ATCACCAACGACCGCTTCGATTCGATGGTGCGGGACATAGACCTCTATTA
CCTGATCAACGGGGTCTTTTGGATATTCGTGGCGTTGTCTTGCGGCTACT
ACGCCTTCCAGCGGCTCTTCCAGTTCTTTCTGAAGTCGTCGAGCATGAAG
CACTTTCAGCGGAGGCTGTTCGCCCGCGTCATTTGGAACATCGCCTTCTA
TGCGGCCAGCTGCCTGTTCCTGCACTTCTACAACGAGTTCATGATCCTGC
CGCAGCTGATGAAGAACCAAGGACGCTACTCGCTCTTCTACTCCTCGGAG
AACCTGATCTTCTATCGATCTCATCAGGCGGAAAAGTTTCAGTTCTACTC
GATCTTCATTATCACGTTCTACCTGCATGGGGCGTGGTTGGACTTCAAGG
ACGCTGACTTCCTGGAGGTGGGCTCCAAGGGACTCTACCTGCTGTCCCTC
GTCGCCATCGATGTTTACAGGTACGAAAACTACTTTGTGGGCCTGAATCT
AACGGTGGGTCTGTACAGCATACTCACCGAGGTGCTAGCCCTGTTGGTCC
TGCCCAGCACCAATTCACACCGGATCATCTACCAGGTTTTCCTCGGTCTG
CGCATCATGGTGTGGGCGTATGTGTTTGTCAACCTACTGCCCTTTAAGTA
CTTCATACCCACGCTGTTCGCCAAGAACTTTAAGCTTTCCCTGAATGTGC
CCATTTGGTTGTGGTACGGCCTCTCCATTTGGAACTCGCCGGTGCTGCAA
TACTTCTACCATCAGATATATCACACAGCGCCGTCGGATTGTTCGGGCGA
GGGATCGGCGGCTAAGTGCATCCTGGTCAAGGACACCAGTGAGTTCCGGC
ACTACAAGACACTGAAGAAGGCCTATTTGGAGGTAAAGCTGGCACACATT
AGAACCACGTCCAATTCGCTGCCCTCCGAAACCAGTTCGGCCTCGGCCAA
AACCTTTCAGGCCATAAAATGCGTCATGATGCTTAAGCGCAAATTGAAGC
GAATTCGCGAGGGACGTGGCCATGAGCCGGAGGATGACAACGATGACCAG
GCCATTGATACCTAAAAGCTTTCTAGACCAT

BS17660.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-RC 1149 CG1636-PC 1..1149 17..1165 5745 100 Plus
CG1636-RA 1149 CG1636-PA 1..1149 17..1165 5745 100 Plus
CG1636-RB 1101 CG1636-PB 1..554 17..570 2770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-RC 1343 CG1636-RC 136..1285 16..1165 5750 100 Plus
CG1636-RA 2124 CG1636-RA 136..1285 16..1165 5750 100 Plus
CG1636-RB 2325 CG1636-RB 136..690 16..570 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8274707..8275209 569..1071 2515 100 Plus
X 23542271 X 8274277..8274627 221..571 1755 100 Plus
X 23542271 X 8273547..8273754 16..223 1040 100 Plus
X 23542271 X 8275268..8275362 1071..1165 475 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:15:25 has no hits.

BS17660.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:12 Download gff for BS17660.complete
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 1..1149 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 10:00:51 Download gff for BS17660.complete
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 132..1278 17..1163 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:52 Download gff for BS17660.complete
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 137..1283 17..1163 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:12 Download gff for BS17660.complete
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 126..1290 10..1175 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:15 Download gff for BS17660.complete
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 137..1283 17..1163 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:15 Download gff for BS17660.complete
Subject Subject Range Query Range Percent Splice Strand
X 8273548..8273754 17..223 100 -> Plus
X 8274280..8274626 224..570 100 -> Plus
X 8274709..8275208 571..1070 100 -> Plus
X 8275268..8275360 1071..1163 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:52 Download gff for BS17660.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8167581..8167787 17..223 100 -> Plus
arm_X 8168313..8168659 224..570 100 -> Plus
arm_X 8168742..8169241 571..1070 100 -> Plus
arm_X 8169301..8169393 1071..1163 100   Plus

BS17660.3prime Sequence

862 bp (775 high quality bases) assembled on 2007-05-29

> BS17660.3prime
ATGGTCTAGAAAGCTTTTAGGTATCAATGGCCTGGTCATCGTTGTCATCC
TCCGGCTCATGGCCACGTCCCTCGCGAATTCGCTTCAATTTGCGCTTAAG
CATCATGACGCATTTTATGGCCTGAAAGGTTTTGGCCGAGGCCGAACTGG
TTTCGGAGGGCAGCGAATTGGACGTGGTTCTAATGTGTGCCAGCTTTACC
TCCAAATAGGCCTTCTTCAGTGTCTTGTAGTGCCGGAACTCACTGGTGTC
CTTGACCAGGATGCACTTAGCCGCCGATCCCTCGCCCGAACAATCCGACG
GCGCTGTGTGATATATCTGATGGTAGAAGTATTGCAGCACCGGCGAGTTC
CAAATGGAGAGGCCGTACCACAACCAAATGGGCACATTCAGGGAAAGCTT
AAAGTTCTTGGCGAACAGCGTGGGTATGAAGTACTTAAAGGGCAGTAGGT
TGACAAACACATACGCCCACACCATGATGCGCAGACCGAGGAAAACCTGG
TAGATGATCCGGTGTGAATTGGTGCTGGGCAGGACCAACAGGGCTAGCAC
CTCGGTGAGTATGCTGTACAGACCCACCGTTAGATTCAGGCCCACAAAGT
AGTTTTCGTACCTGTAAACATCGATGGCGACGAGGGACAGCAGGTAGAGT
CCCTTGGAGCCCACCTCCAGGAAGTCAGCGTCCTTGAAGTCCAACCACGC
CCCATGCAGGTAGAACGTGATAATGAAGATCGAGTAGAACTGAAACTTTT
CCGCCTGATGAGATCGATAGAAGATCAGGTTCTCCGAGGAGTAGAAGAGC
GAGTAGCGTCCTTGGTTCTTCATCAGCTGCGGCAGGATCATGAACTCGTT
GTAGAAGTGCAG

BS17660.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-PA 1149 CG1636-RA 304..1149 862..17 4230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-RC 1343 CG1636-RC 440..1285 862..17 4230 100 Minus
CG1636-RA 2124 CG1636-RA 440..1285 862..17 4230 100 Minus
CG1636-RB 2325 CG1636-RB 686..1237 568..17 2760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8274707..8275209 613..111 2515 100 Minus
X 23542271 X 8274376..8274627 862..611 1260 100 Minus
X 23542271 X 8275268..8275362 111..17 475 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:10:10 has no hits.

BS17660.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:20 Download gff for BS17660.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1636-PA 304..1149 17..862 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:17 Download gff for BS17660.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 440..1295 7..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:03 Download gff for BS17660.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 440..1295 7..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:03 Download gff for BS17660.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8274376..8274626 612..862 100 -> Minus
X 8274709..8275208 112..611 100 -> Minus
X 8275268..8275372 7..111 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:17 Download gff for BS17660.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8168409..8168659 612..862 100 -> Minus
arm_X 8168742..8169241 112..611 100 -> Minus
arm_X 8169301..8169405 7..111 96   Minus

BS17660.5prime Sequence

877 bp (792 high quality bases) assembled on 2007-05-29

> BS17660.5prime
GAAGTTATCAGTCGACATGACCTCCATTCTGGACATGAAGGCCGGTCCGC
CCGACTACTGGGCGGAGATCAGCAACTTCTTTCTGCCGCTGAAATACCTG
ATCACCAACGACCGCTTCGATTCGATGGTGCGGGACATAGACCTCTATTA
CCTGATCAACGGGGTCTTTTGGATATTCGTGGCGTTGTCTTGCGGCTACT
ACGCCTTCCAGCGGCTCTTCCAGTTCTTTCTGAAGTCGTCGAGCATGAAG
CACTTTCAGCGGAGGCTGTTCGCCCGCGTCATTTGGAACATCGCCTTCTA
TGCGGCCAGCTGCCTGTTCCTGCACTTCTACAACGAGTTCATGATCCTGC
CGCAGCTGATGAAGAACCAAGGACGCTACTCGCTCTTCTACTCCTCGGAG
AACCTGATCTTCTATCGATCTCATCAGGCGGAAAAGTTTCAGTTCTACTC
GATCTTCATTATCACGTTCTACCTGCATGGGGCGTGGTTGGACTTCAAGG
ACGCTGACTTCCTGGAGGTGGGCTCCAAGGGACTCTACCTGCTGTCCCTC
GTCGCCATCGATGTTTACAGGTACGAAAACTACTTTGTGGGCCTGAATCT
AACGGTGGGTCTGTACAGCATACTCACCGAGGTGCTAGCCCTGTTGGTCC
TGCCCAGCACCAATTCACACCGGATCATCTACCAGGTTTTCCTCGGTCTG
CGCATCATGGTGTGGGCGTATGTGTTTGTCAACCTACTGCCCTTTAAGTA
CTTCATACCCACGCTGTTCGCCAAGAACTTTAAGCTTTCCCTGAATGTGC
CCATTTGGTTGTGGTACGGCCTCTCCATTTGGAACTCGCCGGTGCTGCAA
TACTTCTACCATCAGATATATCACACA

BS17660.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-PA 1149 CG1636-RA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-RC 1343 CG1636-RC 136..997 16..877 4310 100 Plus
CG1636-RA 2124 CG1636-RA 136..997 16..877 4310 100 Plus
CG1636-RB 2325 CG1636-RB 136..690 16..570 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8274277..8274627 221..571 1755 100 Plus
X 23542271 X 8274707..8275015 569..877 1545 100 Plus
X 23542271 X 8273547..8273754 16..223 1040 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:57:30 has no hits.

BS17660.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:25 Download gff for BS17660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1636-PA 1..860 17..876 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:55:52 Download gff for BS17660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 131..996 10..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:15 Download gff for BS17660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 131..996 10..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:15 Download gff for BS17660.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8273542..8273754 10..223 98 -> Plus
X 8274280..8274626 224..570 100 -> Plus
X 8274709..8275014 571..876 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:55:52 Download gff for BS17660.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8167575..8167787 10..223 98 -> Plus
arm_X 8168313..8168659 224..570 100 -> Plus
arm_X 8168742..8169047 571..876 100   Plus

BS17660.pep Sequence

Translation from 16 to 1164

> BS17660.pep
MTSILDMKAGPPDYWAEISNFFLPLKYLITNDRFDSMVRDIDLYYLINGV
FWIFVALSCGYYAFQRLFQFFLKSSSMKHFQRRLFARVIWNIAFYAASCL
FLHFYNEFMILPQLMKNQGRYSLFYSSENLIFYRSHQAEKFQFYSIFIIT
FYLHGAWLDFKDADFLEVGSKGLYLLSLVAIDVYRYENYFVGLNLTVGLY
SILTEVLALLVLPSTNSHRIIYQVFLGLRIMVWAYVFVNLLPFKYFIPTL
FAKNFKLSLNVPIWLWYGLSIWNSPVLQYFYHQIYHTAPSDCSGEGSAAK
CILVKDTSEFRHYKTLKKAYLEVKLAHIRTTSNSLPSETSSASAKTFQAI
KCVMMLKRKLKRIREGRGHEPEDDNDDQAIDT*

BS17660.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-PC 382 CG1636-PC 1..382 1..382 2017 100 Plus
CG1636-PA 382 CG1636-PA 1..382 1..382 2017 100 Plus
CG1636-PB 366 CG1636-PB 1..366 1..382 1904 95.8 Plus