Clone Sequence Records
BS17666.complete Sequence
2609 bp assembled on 2009-12-07
GenBank Submission: KX805015
> BS17666.complete
GAAGTTATCAGTCGACATGGACACCTCATCCGCAGCAGGATCTGGAGCCG
GAACGGGCGATGTGTGCCCATGCTCCACGGTAGCAACCTCCACGACCTCC
GCATCAAACGAACAGCCGCAGACCAAGCGCCAGAAGATCGAGCAGCAAAT
CAAGGTGGGCTCCAAGGCGCTGCCACCCCAGCCGCCCCATCCGCCGGATA
TACTGGACCTGGACGCCAACAGCAACAGCCACCTGTGCTCCTCGCTCTCC
TCGTCCTCTTCGCACTCGCTGTCAACGCCAAGCACCGCCAACAACTCCCC
CACCACCACGCCCTGTAGTTCCCGGGCGGCGTCGTACGCCCAGCTGCTGC
ACAACATCTTGCCACAAAACGGGGACACAGACCTGCACAGCCAGCCTGAA
TCCGCCCATGACGAAGTGGACAGGGCGGCCAAATTGCCCAACCTGCTAAC
CCTCGACACGACCAACGGCAATGGCAGTCATGCTAGCAGCAGGAGCAATT
GCTTGCAAGCAACAACAGCCACGTCCATCGACGATATGCTGGAGTTCGAG
CAGTCCCTGACCCGCCAGTGCCTGTGCGGCGTCTCGGAGCGAACGCTGCG
CAAGCCCTTCCAGTCGCATTACTCACAGGACACCAACGGCCAGAAACGGA
TAGCCTACCTGCGGGAGTGGCCCACCAACAAGCTGCTGCAGTTTCTGTCG
AATCTGCAGCTACTGTTCGATATCTACCTGAAGCAGAACGCAAAGGGCTT
CATCTGCACGCGGATAATGGACGTTTGCGACGCACTCATTCGCAATGACC
ACAAGCTTATCGACGAGATTATCGTGCTGGCCGGCTACGAGAACTCTTAC
GTGCAATTTCTGGCGGGACGTGTGCTAGCCGCATTCCTGGTGATTGCCAA
GCAAGAGCTGAATGACGAGTGGCTGCAGAAGATCGTCGACCAGCTATTTA
ACTTCGAGCAGCTTGACCAGGCGGCCGTGCAGAAGATCCACTTCAGCCTG
GACATCATCAAGCGCATAGTGGAGTGGAAGGATATGGAGATCCATCCGCT
GGACGACGACTGGATGGCGTCGGCGAATAGTACAAGTGCAGCCTCGTCAG
TAGTGCCCCTTTCGACAGAGGCGTCCGTGAGCTACATGCATTTTCCCGTG
CAGGAGCAGCCGCTAGCCACCAATTATTTTGCACTGCAATTTCGCGAGGA
TACGGAAGGTGAACGAGAGACGGGGCAGGAAGCACCTGACAACCGCGACC
GACATCGGCGGCACTTTGGCGAGGATATGAACGTCGCCTACGAGCCGCAC
CCCGCTCCCCAGTCCACGACCATGCCCAGCGGTTGCCATGTGGTCACACT
AACCGACTCGGAAAGCTTCGATACGACGCACCTGAAGTGCATCACCATTC
AAAAGCTGGAGCACAAGTGGCCCACGCTGGTGAAGAACATGTCGGAGTTG
ATGGCGCCGACGCATCAGGATGCGGCCGAGCACTGTGTGCTCAACTTCTT
GCAGCTATGGGAAAACATCATCTCGGTGAAGGCCAATCTGTCCATCGACG
AGACGCGACCCTACTACGCCCAGCTGGACAAGTTTGAGCTGCTGCTCAGC
CACAGCCTCTCCTGCACCGTGTACAAGCAGATGCTGTGCCTCTTCAACGA
GGCATTGTGCTATGGTTCCACGCTGGCGCTGCAGGACATGCTGCCCGAGG
AGACGTGCAAGCTGGCTCACCAGATAGTCTGCCATGTGCGCGGCTTCCGC
ATACTGGAGTCGTTGCCGCGGCGACAGCCGGACAACATGGTCAGTCTGAT
CGGCTACAATGGCAAGCCGATGGTGTACGCCAATGGAACAATTACCCTGG
CACATGCCGCGCAATCAGGGGACAGCGAAGAGGACGGTGCGCCACTGGAC
CTTATCGAAATGGATAAGACACTGTTGCAGAAGATGGTGCTGTTGGTGCT
GAAGTCGATAGCGGTGACGGTGAAGGAGATACGCAGCGATTCCTCCGACT
CATCCATCGATTCCACCGACTACGATGCCTTCCAGGACATGATGCTCATT
GAGCGCTCGATCCGCGATGTACTCAGCAAGCTGGAGACGTTCATAAAGCA
GACGCTGGAATTCCATCCGGAGTGCCACTTCAGCAAGATCCTGATCCACC
TGTTCGACGACCAGGACGACCACTTGATCGAGGCCATGGTCTGCACGCTG
GACGTCACGTCTGGGATATCGTTCCGCAACAACGCCTTCCCCGAGCTGGT
GGCCATGCTGAATCCGGTGTACACATTCCTGGAGTTCCTCAAGATGACAT
CGAACAGCTCGGACCTGCTGCTGGACCTGCTGGTGAGCAACGAGACCTGC
TTCCTGCTCTACCTGCTGCGCCTGCTCAAGTACATCCGCATGAACTGGAC
GATGTTCGTGCACAGCTGTCACACCTTCGGCATGGGCAGCGCCATGCTAG
ACGAGGCGATGGGCGTTCTTATCCGGCTGCGCCTGCAGATATCCCGCCTC
GTGTCGCGCCAGCTCTACCCCTACGACATTTCCCCCGTGCTGCGCCTGCT
CGAGAGCTGCGAGAGCCTGTACGAGGGCAACGAGCTGAGCTGAAAGCTTT
CTAGACCAT
BS17666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lin-RA | 2577 | CG11770-PA | 1..2577 | 17..2593 | 12885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lin-RA | 3654 | CG11770-RA | 521..3098 | 17..2594 | 12890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8915101..8917678 | 17..2594 | 12890 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:16:02 has no hits.
BS17666.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 10:00:56 Download gff for
BS17666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 517..3092 | 17..2592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:07 Download gff for
BS17666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 521..3096 | 17..2592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:56 Download gff for
BS17666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 517..3092 | 17..2592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:29 Download gff for
BS17666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 521..3096 | 17..2592 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:29 Download gff for
BS17666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8915101..8917676 | 17..2592 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:07 Download gff for
BS17666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4802606..4805181 | 17..2592 | 100 | | Plus |
BS17666.3prime Sequence
891 bp (795 high quality bases) assembled on 2007-05-29
> BS17666.3prime
ATGGTCTAGAAAGCTTTCAGCTCAGCTCGTTGCCCTCGTACAGGCTCTCG
CAGCTCTCGAGCAGGCGCAGCACGGGGGAAATGTCGTAGGGGTAGAGCTG
GCGCGACACGAGGCGGGATATCTGCAGGCGCAGCCGGATAAGAACGCCCA
TCGCCTCGTCTAGCATGGCGCTGCCCATGCCGAAGGTGTGACAGCTGTGC
ACGAACATCGTCCAGTTCATGCGGATGTACTTGAGCAGGCGCAGCAGGTA
GAGCAGGAAGCAGGTCTCGTTGCTCACCAGCAGGTCCAGCAGCAGGTCCG
AGCTGTTCGATGTCATCTTGAGGAACTCCAGGAATGTGTACACCGGATTC
AGCATGGCCACCAGCTCGGGGAAGGCGTTGTTGCGGAACGATATCCCAGA
CGTGACGTCCAGCGTGCAGACCATGGCCTCGATCAAGTGGTCGTCCTGGT
CGTCGAACAGGTGGATCAGGATCTTGCTGAAGTGGCACTCCGGATGGAAT
TCCAGCGTCTGCTTTATGAACGTCTCCAGCTTGCTGAGTACATCGCGGAT
CGAGCGCTCAATGAGCATCATGTCCTGGAAGGCATCGTAGTCGGTGGAAT
CGATGGATGAGTCGGAGGAATCGCTGCGTATCTCCTTCACCGTCACCGCT
ATCGACTTCAGCACCAACAGCACCATCTTCTGCAACAGTGTCTTATCCAT
TTCGATAAGGTCCAGTGGCGCACCGTCCTCTTCGCTGTCCCCTGATTGCG
CGGCATGTGCCAGGGTAATTGTTCCATTGGCGTACACCATCGGCTTGCCA
TTGTAGCCGATCAGACTGACCATGTTGTCCGGCTGTCGCCGCGGCAACGA
CTCCCGTATGCCGAAGCCGCGCACATGGCAGACTATCTGGT
BS17666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11770-PA | 2577 | lin-RA | 1703..2577 | 891..17 | 4325 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lin-RA | 3654 | CG11770-RA | 2223..3098 | 891..16 | 4350 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8916803..8917678 | 891..16 | 4350 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:44:11 has no hits.
BS17666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:00 Download gff for
BS17666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11770-PA | 1703..2577 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:22 Download gff for
BS17666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 2223..3101 | 13..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:56 Download gff for
BS17666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 2223..3101 | 13..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:56 Download gff for
BS17666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8916803..8917681 | 13..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:22 Download gff for
BS17666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4804308..4805186 | 13..891 | 99 | | Minus |
BS17666.5prime Sequence
790 bp (732 high quality bases) assembled on 2007-05-29
> BS17666.5prime
GAAGTTATCAGTCGACATGGACACCTCATCCGCAGCAGGATCTGGAGCCG
GAACGGGCGATGTGTGCCCATGCTCCACGGTAGCAACCTCCACGACCTCC
GCATCAAACGAACAGCCGCAGACCAAGCGCCAGAAGATCGAGCAGCAAAT
CAAGGTGGGCTCCAAGGCGCTGCCACCCCAGCCGCCCCATCCGCCGGATA
TACTGGACCTGGACGCCAACAGCAACAGCCACCTGTGCTCCTCGCTCTCC
TCGTCCTCTTCGCACTCGCTGTCAACGCCAAGCACCGCCAACAACTCCCC
CACCACCACGCCCTGTAGTTCCCGGGCGGCGTCGTACGCCCAGCTGCTGC
ACAACATCTTGCCACAAAACGGGGACACAGACCTGCACAGCCAGCCTGAA
TCCGCCCATGACGAAGTGGACAGGGCGGCCAAATTGCCCAACCTGCTAAC
CCTCGACACGACCAACGGCAATGGCAGTCATGCTAGCAGCAGGAGCAATT
GCTTGCAAGCAACAACAGCCACGTCCATCGACGATATGCTGGAGTTCGAG
CAGTCCCTGACCCGCCAGTGCCTGTGCGGCGTCTCGGAGCGAACGCTGCG
CAAGCCCTTCCAGTCGCATTACTCACAGGACACCAACGGCCAGAAACGGA
TAGCCTACCTGCGGGAGTGGCCCACCAACAAGCTGCTGCAGTTTCTGTCG
AATCTGCAGCTACTGTTCGATATCTACCTGAAGCAGAACGCAAAGGGCTT
CATCTGCACGCGGATAATGGACGTTTGCGACGCACTCCTT
BS17666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11770-PA | 2577 | lin-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lin-RA | 3654 | CG11770-RA | 521..1291 | 17..787 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8915101..8915871 | 17..787 | 3855 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:11:01 has no hits.
BS17666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:04 Download gff for
BS17666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11770-PA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:21 Download gff for
BS17666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 518..1294 | 10..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:16 Download gff for
BS17666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 518..1294 | 10..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:16 Download gff for
BS17666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8915098..8915874 | 10..790 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:21 Download gff for
BS17666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4802603..4803379 | 10..790 | 99 | | Plus |
BS17666.pep Sequence
Translation from 16 to 2592
> BS17666.pep
MDTSSAAGSGAGTGDVCPCSTVATSTTSASNEQPQTKRQKIEQQIKVGSK
ALPPQPPHPPDILDLDANSNSHLCSSLSSSSSHSLSTPSTANNSPTTTPC
SSRAASYAQLLHNILPQNGDTDLHSQPESAHDEVDRAAKLPNLLTLDTTN
GNGSHASSRSNCLQATTATSIDDMLEFEQSLTRQCLCGVSERTLRKPFQS
HYSQDTNGQKRIAYLREWPTNKLLQFLSNLQLLFDIYLKQNAKGFICTRI
MDVCDALIRNDHKLIDEIIVLAGYENSYVQFLAGRVLAAFLVIAKQELND
EWLQKIVDQLFNFEQLDQAAVQKIHFSLDIIKRIVEWKDMEIHPLDDDWM
ASANSTSAASSVVPLSTEASVSYMHFPVQEQPLATNYFALQFREDTEGER
ETGQEAPDNRDRHRRHFGEDMNVAYEPHPAPQSTTMPSGCHVVTLTDSES
FDTTHLKCITIQKLEHKWPTLVKNMSELMAPTHQDAAEHCVLNFLQLWEN
IISVKANLSIDETRPYYAQLDKFELLLSHSLSCTVYKQMLCLFNEALCYG
STLALQDMLPEETCKLAHQIVCHVRGFRILESLPRRQPDNMVSLIGYNGK
PMVYANGTITLAHAAQSGDSEEDGAPLDLIEMDKTLLQKMVLLVLKSIAV
TVKEIRSDSSDSSIDSTDYDAFQDMMLIERSIRDVLSKLETFIKQTLEFH
PECHFSKILIHLFDDQDDHLIEAMVCTLDVTSGISFRNNAFPELVAMLNP
VYTFLEFLKMTSNSSDLLLDLLVSNETCFLLYLLRLLKYIRMNWTMFVHS
CHTFGMGSAMLDEAMGVLIRLRLQISRLVSRQLYPYDISPVLRLLESCES
LYEGNELS*
BS17666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lin-PA | 858 | CG11770-PA | 1..858 | 1..858 | 4449 | 100 | Plus |
