Clone Sequence Records
BS17671.complete Sequence
2843 bp assembled on 2009-12-07
GenBank Submission: KX805031
> BS17671.complete
GAAGTTATCAGTCGACATGGACTACGAACGCTCGCTGCGTGATCGCCGCC
AAAACGACAACGAGTACCGACAATTCCTCGAGTTCCGCGAAAAGCTGCCC
ATTGCAGCGATGCGGTCGGAAATTTTAACCGCAATTAATGACAATCCAGT
GGTAATCATTCGTGGAAACACAGGGTGCGGAAAGACTACCCAGATTGCCC
AATACATTCTTGATGACTACATCTGCTCCGGCCAGGGCGGGTACGCTAAT
ATTTATGTGACCCAGCCTCGTCGCATTTCAGCCATTTCTGTGGCCGAGCG
CGTAGCTCGCGAGCGGTGCGAGCAATTGGGCGACACTGTAGGCTACTCGG
TGCGATTTGAGTCTGTGTTTCCACGACCCTACGGCGCAATCCTCTTTTGC
ACCGTGGGTGTGTTGCTGCGCAAGCTGGAGGCTGGCTTACGAGGAGTGTC
GCATATTATTGTGGACGAAATCCACGAGAGAGACGTGAACAGCGACTTTT
TGCTGGTCATCCTTCGCGACATGGTCGACACATATCCGGACCTGCATGTT
ATTCTTATGTCGGCCACTATTGATACAACGAAATTTTCCAAATATTTTGG
CATCTGTCCCGTATTGGAAGTACCCGGAAGAGCATTTCCCGTGCAGCAAT
TTTTCTTGGAGGACATTATTCAGATGACAGACTTTGTGCCTTCGGCGGAG
TCGCGCCGAAAGCGCAAGGAAGTGGAGGACGAGGAGCAATTGCTTTCCGA
GGACAAGGACGAGGCGGAAATCAACTATAACAAGGTGTGCGAGGACAAGT
ATTCACAAAAGACTCGAAATGCTATGGCCATGCTATCCGAATCGGACGTT
AGCTTTGAGCTGCTGGAGGCATTATTGATGCATATTAAGTCAAAAAATAT
TCCCGGTGCTATCTTAGTATTCCTGCCCGGTTGGAACCTGATCTTTGCGC
TTATGAAGTTTCTGCAAAATACAAACATTTTTGGTGATACATCCCAATAC
CAAATTTTGCCGTGCCACTCGCAGATTCCACGAGACGAGCAACGCAAGGT
TTTCGAGCCTGTTCCAGAAGGCGTAACCAAGATTATACTTTCTACCAACA
TTGCAGAGACTTCTATAACTATTGACGACATTGTTTTCGTAATTGATATA
TGTAAGGCGCGCATGAAGCTCTTTACTTCACATAACAACCTAACCAGCTA
CGCCACCGTTTGGGCAAGCAAAACCAATTTGGAGCAGCGCAAGGGCCGAG
CTGGACGTGTCCGACCAGGCTTCTGCTTCACACTCTGTTCGCGTGCCCGC
TTCCAAGCGCTAGAGGACAATCTTACGCCGGAGATGTTCCGCACACCGTT
GCACGAGATGGCGTTGACCATTAAATTACTCAGACTGGGCTCCATTCACC
ACTTTTTGTCAAAGGCATTGGAGCCACCTCCGGTAGACGCAGTAATCGAA
GCTGAGGTGTTGCTTCGCGAGATGCGCTGCCTTGACGCTAACGATGAACT
TACTCCATTGGGGCGCCTGCTGGCACGCCTCCCAATTGAACCAAGACTTG
GAAAGATGATGGTCCTCGGCGCAGTATTTGGCTGCGCCGATCTAATGGCC
ATTATGGCTTCGTACTCTAGCACCTTCTCAGAGGTGTTTAGTCTTGATAT
AGGTCAACGTCGCCTGGCAAATCATCAGAAAGCGTTGAGTGGTACCAAAT
GTTCCGACCACGTGGCAATGATTGTAGCTTCACAAATGTGGCGGCGCGAG
AAACAACGCGGTGAGCATATGGAAGCTCGGTTCTGTGACTGGAAAGGACT
GCAAATGAGTACTATGAACGTTATCTGGGATGCCAAGCAGCAGTTACTGG
ATCTCCTTCAGCAGGCAGGATTCCCAGAAGAGTGTATGATATCGCACGAG
GTAGACGAAAGGATTGATGGGGATGACCCCGTGCTGGATGTGTCCCTGGC
GCTGCTGTGCTTGGGTCTCTACCCCAACATTTGCGTGCACAAGGAGAAGC
GCAAAGTGCTGACTACAGAGTCTAAAGCAGCGTTACTGCACAAAACCTCG
GTGAATTGCAGCAACTTGGCCGTCACATTTCCGTATCCGTTCTTCGTTTT
CGGCGAGAAGATTCGCACGCGAGCTGTTTCCTGCAAGCAACTATCTATGG
TCTCGCCCTTGCAGGTGATATTGTTTGGATCGCGCAAGATTGACTTGGCC
GCCAACAATATAGTGCGCGTTGACAACTGGCTTAACTTCGACATAGAGCC
GGAACTTGCGGCCAAGATTGGTGCCCTTAAGCCGGCCCTGGAGGATCTTA
TCACGGTGGCGTGCGACAACCCTTCCGACATACTTCGCCTTGAGGAGCCC
TATGCACAGCTGGTCAAAGTGGTCAAAGACCTTTGCGTTAAGAGCGCCGG
AGACTTCGGACTGCAGCGTGAATCAGGAATTCTGCCGCACCAATCACGTC
AGTTCAGTGACGGCGGAGGACCGCCCAAACGAGGTCGCTTTGAGACAGGA
CGCTTTACTAACAGCAGCTTTGGTCGCCGTGGAAACGGCAGAACTTTTGG
AGGAGGATATGGAAATAATGGAGGAGGATATGGAAATAATGGAGGAGGAT
ATGGAAATATTGGAGGAGGATATGGAAATAATGCAGGAGGTTATGGAAAT
AATGGTGGATATGGAAATAATGGCGGAGGTTATAGAAATAATGGTGGAGG
ATATGGAAACAATGGCGGAGGATATGGGAACAAGAGAGGTGGATTTGGAG
ACTCATTTGAAAGCAATAGAGGATCAGGCGGCGGCTTTAGAAATGGCGAC
CAAGGCGGCCGCTGGGGTAACTTTTAAAAGCTTTCTAGACCAT
BS17671.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mle-RC | 2811 | CG11680-PC | 1..2811 | 17..2827 | 14055 | 100 | Plus |
| mle-RA | 3882 | CG11680-PA | 1072..3882 | 17..2827 | 14055 | 100 | Plus |
| mle-RC | 2811 | CG11680-PC | 2532..2667 | 2590..2725 | 385 | 88.5 | Plus |
| mle-RC | 2811 | CG11680-PC | 2574..2709 | 2548..2683 | 385 | 88.5 | Plus |
| mle-RA | 3882 | CG11680-PA | 3645..3780 | 2548..2683 | 385 | 88.5 | Plus |
| mle-RA | 3882 | CG11680-PA | 3603..3738 | 2590..2725 | 385 | 88.5 | Plus |
| mle-RC | 2811 | CG11680-PC | 2531..2643 | 2610..2719 | 305 | 86.7 | Plus |
| mle-RA | 3882 | CG11680-PA | 3602..3714 | 2610..2719 | 305 | 86.7 | Plus |
| mle-RC | 2811 | CG11680-PC | 2539..2609 | 2657..2727 | 250 | 90.1 | Plus |
| mle-RA | 3882 | CG11680-PA | 3610..3680 | 2657..2727 | 250 | 90.1 | Plus |
| mle-RC | 2811 | CG11680-PC | 2535..2630 | 2635..2727 | 235 | 85.4 | Plus |
| mle-RA | 3882 | CG11680-PA | 3606..3701 | 2635..2727 | 235 | 85.4 | Plus |
| mle-RC | 2811 | CG11680-PC | 2532..2610 | 2671..2749 | 200 | 83.5 | Plus |
| mle-RA | 3882 | CG11680-PA | 3603..3681 | 2671..2749 | 200 | 83.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mle-RC | 4023 | CG11680-RC | 880..3690 | 17..2827 | 14055 | 100 | Plus |
| mle-RA | 4062 | CG11680-RA | 1156..3966 | 17..2827 | 14055 | 100 | Plus |
| mle-RC | 4023 | CG11680-RC | 3411..3546 | 2590..2725 | 385 | 88.5 | Plus |
| mle-RC | 4023 | CG11680-RC | 3453..3588 | 2548..2683 | 385 | 88.5 | Plus |
| mle-RA | 4062 | CG11680-RA | 3687..3822 | 2590..2725 | 385 | 88.5 | Plus |
| mle-RA | 4062 | CG11680-RA | 3729..3864 | 2548..2683 | 385 | 88.5 | Plus |
| mle-RC | 4023 | CG11680-RC | 3410..3522 | 2610..2719 | 305 | 86.7 | Plus |
| mle-RA | 4062 | CG11680-RA | 3686..3798 | 2610..2719 | 305 | 86.7 | Plus |
| mle-RC | 4023 | CG11680-RC | 3418..3488 | 2657..2727 | 250 | 90.1 | Plus |
| mle-RA | 4062 | CG11680-RA | 3694..3764 | 2657..2727 | 250 | 90.1 | Plus |
| mle-RC | 4023 | CG11680-RC | 3414..3509 | 2635..2727 | 235 | 85.4 | Plus |
| mle-RA | 4062 | CG11680-RA | 3690..3785 | 2635..2727 | 235 | 85.4 | Plus |
| mle-RC | 4023 | CG11680-RC | 3411..3489 | 2671..2749 | 200 | 83.5 | Plus |
| mle-RA | 4062 | CG11680-RA | 3687..3765 | 2671..2749 | 200 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5975190..5977469 | 2827..548 | 11400 | 100 | Minus |
| 2R | 25286936 | 2R | 5977987..5978518 | 548..17 | 2660 | 100 | Minus |
| 2R | 25286936 | 2R | 5975292..5975427 | 2683..2548 | 385 | 88.5 | Minus |
| 2R | 25286936 | 2R | 5975334..5975469 | 2725..2590 | 385 | 88.5 | Minus |
| 2R | 25286936 | 2R | 5975358..5975470 | 2719..2610 | 305 | 86.7 | Minus |
| 2R | 25286936 | 2R | 5975392..5975462 | 2727..2657 | 250 | 90.1 | Minus |
| 2R | 25286936 | 2R | 5975371..5975466 | 2727..2635 | 235 | 85.4 | Minus |
| 2R | 25286936 | 2R | 5975391..5975469 | 2749..2671 | 200 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:36:32 has no hits.
BS17671.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:34 Download gff for
BS17671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RC | 1..2811 | 17..2827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:50 Download gff for
BS17671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RC | 639..3447 | 17..2825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:35 Download gff for
BS17671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RA | 1156..3964 | 17..2825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:35 Download gff for
BS17671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RC | 639..3447 | 17..2825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:38 Download gff for
BS17671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RA | 1156..3964 | 17..2825 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:38 Download gff for
BS17671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5975192..5977468 | 549..2825 | 100 | <- | Minus |
| 2R | 5977987..5978518 | 17..548 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:35 Download gff for
BS17671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1862697..1864973 | 549..2825 | 100 | <- | Minus |
| arm_2R | 1865492..1866023 | 17..548 | 100 | | Minus |
BS17671.3prime Sequence
947 bp (740 high quality bases) assembled on 2007-05-29
> BS17671.3prime
ATGGTCTAGAAAGCTTTTAAAAGTTACCCCAGCGGCCGCCTTGGTCGCCA
TTTCTAAAGCCGCCGCCTGATCCTCTATTGCTTTCAAATGAGTCTCCAAA
TCCACCTCTCTTGTTCCCATATCCTCCGCCATTGTTTCCATATCCTCCAC
CATTATTTCTATAACCTCCGCCATTATTTCCATATCCACCATTATTTCCA
TAACCTCCTGCATTATTTCCATATCCTCCTCCAATATTTCCATATCCTCC
TCCATTATTTCCATATCCTCCTCCATTATTTCCATATCCTCCTCCAAAAG
TTCTGCCGTTTCCACGGCGACCAAAGCTGCTGTTAGTAAAGCGTCCTGTC
TCAAAGCGACCTCGTTTGGGCGGTCCTCCGCCGTCACTGAACTGACGTGA
TTGGTGCGGCAGAATTCCTGATTCACGCTGCAGTCCGAAGTCTCCGGCGC
TCTTAACGCAAAGGTCTTTGACCACTTTGACCAGCTGTGCATAGGGCTCC
TCAAGGCGAAGTATGTCGGAAGGGTTGTCGCACGCCACCGTGATAAGATC
CTCCAGGGCCGGCTTAAGGGCACCAATCTTGGCCGCAAGTTCCGGCTCTA
TGTCGAAGTTAAGCCAGTTGTCAACGCGCACTATATTGTTGGCGGCCAAG
TCAATCTTGCGCGATCCAAACAATATCACCTGCAAGGGCGAGACCATAGA
TAGTTGCTTGCAGGAAACAGCTCGCGTGCGAATCTTCTCGCCGAAAACGA
AGAACGGATACGGAAATGTGACGGCCAAGTTGCTGCAATTCACCGAGGTT
TTGTGCAGTAACGCTGCTTTAGACTCTGTAGTCAGCACTTTGCGCTTCTC
CTTGTGCACGCAAATGTTGGGGTAGAGACCCAAGCACAGCAGCGCCAGGG
ACACATCCAGCACGGGGTCATCCCCAATCATCCTTTCGTCTACTTCG
BS17671.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11680-PA | 3882 | mle-RA | 2973..3882 | 926..17 | 4550 | 100 | Minus |
| CG11680-PC | 2811 | mle-RC | 1902..2811 | 926..17 | 4550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mle-RC | 4023 | CG11680-RC | 2760..3690 | 947..17 | 4595 | 99.7 | Minus |
| mle-RA | 4062 | CG11680-RA | 3036..3966 | 947..17 | 4595 | 99.7 | Minus |
| mle-RC | 4023 | CG11680-RC | 3411..3546 | 254..119 | 435 | 88.5 | Minus |
| mle-RC | 4023 | CG11680-RC | 3453..3588 | 296..161 | 435 | 88.5 | Minus |
| mle-RA | 4062 | CG11680-RA | 3729..3864 | 296..161 | 435 | 88.5 | Minus |
| mle-RA | 4062 | CG11680-RA | 3687..3822 | 254..119 | 435 | 88.5 | Minus |
| mle-RC | 4023 | CG11680-RC | 3410..3522 | 234..125 | 330 | 86.7 | Minus |
| mle-RA | 4062 | CG11680-RA | 3686..3798 | 234..125 | 330 | 86.7 | Minus |
| mle-RC | 4023 | CG11680-RC | 3414..3509 | 209..117 | 260 | 85.4 | Minus |
| mle-RA | 4062 | CG11680-RA | 3690..3785 | 209..117 | 260 | 85.4 | Minus |
| mle-RC | 4023 | CG11680-RC | 3418..3488 | 187..117 | 250 | 90.1 | Minus |
| mle-RA | 4062 | CG11680-RA | 3694..3764 | 187..117 | 250 | 90.1 | Minus |
| mle-RC | 4023 | CG11680-RC | 3411..3489 | 173..95 | 200 | 83.5 | Minus |
| mle-RA | 4062 | CG11680-RA | 3687..3765 | 173..95 | 200 | 83.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5975190..5976120 | 17..947 | 4595 | 99.6 | Plus |
| 2R | 25286936 | 2R | 5975292..5975427 | 161..296 | 385 | 88.5 | Plus |
| 2R | 25286936 | 2R | 5975334..5975469 | 119..254 | 385 | 88.5 | Plus |
| 2R | 25286936 | 2R | 5975358..5975470 | 125..234 | 305 | 86.7 | Plus |
| 2R | 25286936 | 2R | 5975392..5975462 | 117..187 | 250 | 90.1 | Plus |
| 2R | 25286936 | 2R | 5975371..5975466 | 117..209 | 235 | 85.4 | Plus |
| 2R | 25286936 | 2R | 5975391..5975469 | 95..173 | 200 | 83.5 | Plus |
Blast to na_te.dros performed 2015-02-12 23:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy7 | 5486 | gypsy7 GYPSY7 5486bp | 625..680 | 101..45 | 111 | 68.4 | Minus |
BS17671.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:37 Download gff for
BS17671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11680-PC | 1881..2811 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:24 Download gff for
BS17671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RA | 3036..3966 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:59 Download gff for
BS17671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RA | 3036..3966 | 17..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:59 Download gff for
BS17671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5975190..5976120 | 17..947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:24 Download gff for
BS17671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1862695..1863625 | 17..947 | 99 | | Plus |
BS17671.5prime Sequence
841 bp (732 high quality bases) assembled on 2007-05-29
> BS17671.5prime
GAAGTTATCAGTCGACATGGACTACGAACGCTCGCTGCGTGATCGCCGCC
AAAACGACAACGAGTACCGACAATTCCTCGAGTTCCGCGAAAAGCTGCCC
ATTGCAGCGATGCGGTCGGAAATTTTAACCGCAATTAATGACAATCCAGT
GGTAATCATTCGTGGAAACACAGGGTGCGGAAAGACTACCCAGATTGCCC
AATACATTCTTGATGACTACATCTGCTCCGGCCAGGGCGGGTACGCTAAT
ATTTATGTGACCCAGCCTCGTCGCATTTCAGCCATTTCTGTGGCCGAGCG
CGTAGCTCGCGAGCGGTGCGAGCAATTGGGCGACACTGTAGGCTACTCGG
TGCGATTTGAGTCTGTGTTTCCACGACCCTACGGCGCAATCCTCTTTTGC
ACCGTGGGTGTGTTGCTGCGCAAGCTGGAGGCTGGCTTACGAGGAGTGTC
GCATATTATTGTGGACGAAATCCACGAGAGAGACGTGAACAGCGACTTTT
TGCTGGTCATCCTTCGCGACATGGTCGACACATATCCGGACCTGCATGTT
ATTCTTATGTCGGCCACTATTGATACAACGAAATTTTCCAAATATTTTGG
CATCTGTCCCGTATTGGAAGTACCCGGAAGAGCATTTCCCGTGCAGCAAT
TTTTCTTGGAGGACATTATTCAGATGACAGACTTTGTGCCTTCGGCGGAG
TCGCGCCGAAAGCGCAAGGAAGTGGAGGACGAGGAGTCATTGCTTTCCGA
GGACAAGGACGAGGCGGAAATCAACTATAACAAGGTGTGCGAGGACAAGT
ATTCACAAAAGACTCGAAATGCTATGGCCATGCTATCCGAA
BS17671.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11680-PA | 3882 | mle-RA | 1072..1896 | 17..841 | 4075 | 99.7 | Plus |
| CG11680-PC | 2811 | mle-RC | 1..825 | 17..841 | 4075 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mle-RC | 4023 | CG11680-RC | 880..1704 | 17..841 | 4095 | 99.8 | Plus |
| mle-RA | 4062 | CG11680-RA | 1156..1980 | 17..841 | 4095 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5977987..5978518 | 548..17 | 2660 | 100 | Minus |
| 2R | 25286936 | 2R | 5977176..5977469 | 841..548 | 1440 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:24:07 has no hits.
BS17671.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:41 Download gff for
BS17671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11680-PC | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:39:40 Download gff for
BS17671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RA | 1153..1980 | 12..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:35 Download gff for
BS17671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RA | 1153..1980 | 12..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:35 Download gff for
BS17671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5977176..5977468 | 549..841 | 99 | <- | Minus |
| 2R | 5977987..5978521 | 12..548 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:39:40 Download gff for
BS17671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1864681..1864973 | 549..841 | 99 | <- | Minus |
| arm_2R | 1865492..1866026 | 12..548 | 99 | | Minus |
BS17671.pep Sequence
Translation from 16 to 2826
> BS17671.pep
MDYERSLRDRRQNDNEYRQFLEFREKLPIAAMRSEILTAINDNPVVIIRG
NTGCGKTTQIAQYILDDYICSGQGGYANIYVTQPRRISAISVAERVARER
CEQLGDTVGYSVRFESVFPRPYGAILFCTVGVLLRKLEAGLRGVSHIIVD
EIHERDVNSDFLLVILRDMVDTYPDLHVILMSATIDTTKFSKYFGICPVL
EVPGRAFPVQQFFLEDIIQMTDFVPSAESRRKRKEVEDEEQLLSEDKDEA
EINYNKVCEDKYSQKTRNAMAMLSESDVSFELLEALLMHIKSKNIPGAIL
VFLPGWNLIFALMKFLQNTNIFGDTSQYQILPCHSQIPRDEQRKVFEPVP
EGVTKIILSTNIAETSITIDDIVFVIDICKARMKLFTSHNNLTSYATVWA
SKTNLEQRKGRAGRVRPGFCFTLCSRARFQALEDNLTPEMFRTPLHEMAL
TIKLLRLGSIHHFLSKALEPPPVDAVIEAEVLLREMRCLDANDELTPLGR
LLARLPIEPRLGKMMVLGAVFGCADLMAIMASYSSTFSEVFSLDIGQRRL
ANHQKALSGTKCSDHVAMIVASQMWRREKQRGEHMEARFCDWKGLQMSTM
NVIWDAKQQLLDLLQQAGFPEECMISHEVDERIDGDDPVLDVSLALLCLG
LYPNICVHKEKRKVLTTESKAALLHKTSVNCSNLAVTFPYPFFVFGEKIR
TRAVSCKQLSMVSPLQVILFGSRKIDLAANNIVRVDNWLNFDIEPELAAK
IGALKPALEDLITVACDNPSDILRLEEPYAQLVKVVKDLCVKSAGDFGLQ
RESGILPHQSRQFSDGGGPPKRGRFETGRFTNSSFGRRGNGRTFGGGYGN
NGGGYGNNGGGYGNIGGGYGNNAGGYGNNGGYGNNGGGYRNNGGGYGNNG
GGYGNKRGGFGDSFESNRGSGGGFRNGDQGGRWGNF*
BS17671.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mle-PC | 936 | CG11680-PC | 1..936 | 1..936 | 4904 | 100 | Plus |
| mle-PA | 1293 | CG11680-PA | 358..1293 | 1..936 | 4904 | 100 | Plus |
| CG1582-PB | 1288 | CG1582-PB | 437..1209 | 11..720 | 1138 | 36.8 | Plus |
| CG1582-PA | 1288 | CG1582-PA | 437..1209 | 11..720 | 1138 | 36.8 | Plus |
| CG9323-PB | 942 | CG9323-PB | 136..853 | 10..721 | 1026 | 34.5 | Plus |
