Clone Sequence Records
BS17672.complete Sequence
4031 bp assembled on 2009-12-07
GenBank Submission: KX806127
> BS17672.complete
GAAGTTATCAGTCGACATGAGCACACAAACTCGTTCAGGCGGCGGGGGAG
GCGGCGGCCATGCCCGCAACCAGAAAAAGTCAAATGCCAGCAACTCCGGC
GGAGGAGGAACCGGCCATCACGATGGAGTCTCACATGCTGCGGCCGCTGG
CAAGAAGGGAGGCCAGGATGCCAGCAAGACAGACAAGCCAGAGAAGGCCC
AGCCCAAGGCTACCACCGAACAGTTGCGCATTGCCCAGATCACCAATAGC
ACCACAGAGGATCCGCAGATCAACGAGAAGGTTCTCCTTCTTTTGACCAT
GACCCAACGTTCCGAGGAGGAGGTCTGCTGTGCCCTCAACGAGTGCGATT
ACGACCTGGAGGCCGCGGCCAACTTCTTGATCGAGGAGCTACCGCAGGGC
GCCTTTGCCAAGTACGAGAAAAAGCGCAAGAACAAGGCTGCAAATAACAC
GGCTGATGGTGCTGCTGGCGATGGCGATTGGGCCGATGGCAATGGCAATG
CGGACAGGCGGGAAAAGTCGCGAAACCGCAGCTCAAATCGCGGAGGCACC
CGTGGCTCCAGTGACAGTCGTGGATGGCGCGGAAGAGAGACTCGTGAGAA
TGAGCGCAACCAGCGCGAATCTCGCGAACCTTGGTCCGGGCAAAACGCTG
GTCAGGACCGCGGTGACGATCGGGCAAATGACAACTACCGCGGGCAGCGC
AACGGCGGCGGACGCAGTGGTCCCGGTGGCGGTGGACGCGGTGGTGGCTT
TGTCTCTCGCTCTGGCCGTGGCGGCGGCCGCATGGGGGGACGCACCGGTG
GACCGCGTGGCGATCGCGGCAGCGGAGGCCCTGGTGGTGCTTATGGATCA
GGTCGCGGTGGCAATGCAAACGAGGATCACCACGAGGTTGAGCTGTGGGA
CAACACCATTGCCCAAAATGCCGAGAAGCAGCAACAGGCTCATGACGATG
CCTGGGGCGACTGGAACAACGAGGAGTACGAGGGCTCGCTCAAGGACAGC
AAGGTGTTCACCACTAGCAACCTGGCAACGCAATCCGCTGCCAACGTGGT
TAGCGGAACTGGCGCGAGTGTTACAGCTGTTCCTGCGGCGGCTGGAACCG
AGATATCGGCGCCACCGGGCCTTGAACATCAGTTGGTGCAGCAGGGATCT
CATCTGGAGGAGAGCTCCAGCAGCGGCCCAGCGGCGGTCACACCGCCAGC
AACGCTGAGCGGCTCGGCGACCACGCCGCTGCTGCAATACAGCGCAGCGG
TCAGTAATCCACCGCCCCAGCTGCAGTCCCAGGGCACACAGTCAGGAGCG
GGTACAGGAGCGAGCGCAGCTGCCGGCGGAGGAGCAGGCAGCACACCGTC
ATCCTTTGTATCCGCCTCTCCCGACACATTCTCAAGCGCCGCCTCGGCAG
CTGCCACGCTGGTGCATCAAGCACAAAAGCAGCAGCAACTTCAGCAGCAG
ACGACGCCTATCAAGCCGTCGGCTACTTTGTCGGTCGAGCAATCTCAGTA
TTTCAACTCGTTGGCCAGCCAGGGCGTCAGCCCAGGTTCTGTTCCAGTGC
AATCGGCGCCAGCGGGTTACGCGCAAAACCCCGTGGCCGCCTACTCCCAA
ACTAGCACTAGCGTGGGTGTGAGCCAGTACCCCAATACCTATGCCAACGT
ATTCGCTTCTGGAACGGCAGCTGGAGCTGGCACTGCCGAGCAATCGCAGC
AGCAACCGCAGATACGGAGGGCACGTGTTAAGCTGCCACCACCCTCGAAG
ATTCCTGCGAGTGCCGTCGAAATGCCCGGAGACAATGCACTGAACAACAT
TGGCTACCTGGACGTGCAGTTCGGCGCTCTGGACTTCGGCACGGACGATG
GCTTCGAGCCATTGCCGGAGAAGGTTGGTTCGGGCTTTAGCATTGATGGT
CAGCAGCAGCAACAGCAGCCAGATGACTACCAGAGCAAGTCCCAGCAACA
GCAGCAGGTGACGCTAGCGGCAGGTCTACAGAGTTCGCAGATTAGCGATG
CCTTAAATGCAGCGGGCTATACAAGCCGTTCGACGTCACAGCAGCAGCAG
GGCGTTAGCTCAGCGGTGAATGCCACAATCGATCAGCTGACCAAGAGCGA
TCCCTACGGACAGACGGGCGGCAGTGGTAACGCCTACCAAAACGCGTACC
AGAGCAGTGGAGCGAGTAAGACAGCCAGTGGCTTTCCGACGACCGCGCCC
GGTGGCTACAGCAGCTCCACATACGCGAATGTGCAAAGCTCAGTAGCCAA
CAGTTACCAGCAGCAGGGATACGGCTCATACCAGCCCAGTTCCTACCAGC
AGCAGGCTGGCAGCGGGGCTCAAAGCGGTACAGGTGCGGTAAGCGGAGGC
GGAGGAACGGCGACGCAAAACATTCCGGTTGGAGGCAGCAGCAGCCAAAA
TAGCACGAGCGGCAATGCGAGCTCTGCCTACCTCACATCCGGATATTCGA
CACCACAAAGTGCTTACCAGTCAAGCCAGAGTGTTTATGGCAACACTGGA
CTGTCCAACAGCAGCGGGTTCTCTGGCAGTGCGAGCAACGCGTCCTCGCA
GTACGCCAATTTCAGTGCCAGCGCCAAGCTAAAGGATGCGACCACGGCCA
GTAGCGCCGCTCATTACGACAGTGTCTCAACCAGCAGCGGAGTGAGCAGC
AACAGCGGAAGCACAGGCAATGGCGGTGTGGTGAGCGGTCAAACAGGTGC
TAACCAGGCGGCTGTATCGAACAATAACAGCGTGAGCGGCAGCAGCTCGG
TCAGCAATGTGACGGCAGGCGTTGCGAGTGGCAACGTAGCTGGCGTGGGC
GGAGGCGTAAGCCAGAGCGGCGTAAGTAGTGGAGTCGGCGTGCCCGGTGG
CAGCGCGTCCAGCGTCGGTGTGAATGTGAACAACAACAGCAGCAGCGCCA
GCTCGGTGGGAGCAGCGACCGTTGCCCAGACAGCCACGGGAACCACCGCT
GCAGTGCTGGCCTCGCTGACCAACAAGAACACCAGCAGCAGCAATAGCAG
CGGCAGCGGTGGCAGTGCTGCCACGACGACGGGCAACGCCAGCGGACAAG
GTGCGGGAGCAAGCACCGGCGGCGTGGGCAGCTCGTCGGGTGCTGGTGGT
GCTGGTAGTGGTGGTGGCAGCGGTAGCGGCTTGGTGCCCACCAACATCCA
AATGGTTAGTCAATATATTCAGACTGGATTGCCATACTATCAGCAACCAG
TGTATTCCTACGAGGAATTGCAAATGATGCAACAGAGAGTGCCACATGTG
CAGGGATATTACGATCTGAACTATCCGCCGGCCAGTTTAGGAGCTGGACG
TGACAACCTCGGCTCTGTGACGTATTCTGCTATGAATGATGGACGCTTTG
CCCGCACTGACAATAACTCCAGTCCGGTCGGCAATGTCTCCAGCACAATG
TCGCAACAGGCTGGCTCAAGTGCGCCCATGCTAAATGTTCCTTACGCCTA
CTTCTATGGTGGCAATGTAATGCCCGGTAGTTTTCAATATGGCACGCCCG
CCATATATCCACAAATACCGGCAGCAAACACTGCCTCCGGTCAACAGTTC
CCGAAGCCTTCGTATAGCGCGGGCTACGGCTCGACCAGCTATGACACTCT
GTCGCAGACCACGCAGGACTACAGCAAGGGCGGCTACTCGTCGAGCGTGA
ATCAGCAGAGCAAAACTCAGACTGTGTCCAACCAGTCGCAGGCAGGCACT
GGATCCGATCTGACCTCTTCTATGTACGGAAAAGGACACGTGGCGCTGAA
CAAGGTTAATTCGTACGAGAAGCAGAGTTTCCATTCGGGCACTCCGCCCC
CGTTTAACATGCCCAACACTCAGACGGCTGGAGGCACCTCTGCCCAACCG
TACGGCATGTACTTGCCGATGCCAGCGGCCGGACACCACAATATGATCCA
TCAGCCCATCCACCAGGACTCGAACAGTGCCGGGCAGCGTCAACAGTCGA
CCAGCCAGTCGAAGTCTGCTGGCAAGCAAGGCTACTCGCCCTCGTACTGG
GCCGGACAGAACTAGAAGCTTTCTAGACCAT
BS17672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lig-RG | 3999 | CG8715-PG | 1..3999 | 17..4015 | 19995 | 100 | Plus |
| lig-RF | 3999 | CG8715-PF | 1..3999 | 17..4015 | 19995 | 100 | Plus |
| lig-RE | 3999 | CG8715-PE | 1..3999 | 17..4015 | 19995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lig-RG | 5114 | CG8715-RG | 130..4128 | 17..4015 | 19995 | 100 | Plus |
| lig-RF | 5072 | CG8715-RF | 88..4086 | 17..4015 | 19995 | 100 | Plus |
| lig-RE | 5048 | CG8715-RE | 64..4062 | 17..4015 | 19995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8070821..8072238 | 576..1993 | 7090 | 100 | Plus |
| 2R | 25286936 | 2R | 8073974..8074500 | 2724..3250 | 2635 | 100 | Plus |
| 2R | 25286936 | 2R | 8072363..8072778 | 1994..2409 | 2080 | 100 | Plus |
| 2R | 25286936 | 2R | 8069899..8070280 | 17..398 | 1910 | 100 | Plus |
| 2R | 25286936 | 2R | 8075860..8076108 | 3512..3760 | 1245 | 100 | Plus |
| 2R | 25286936 | 2R | 8070333..8070513 | 396..576 | 905 | 100 | Plus |
| 2R | 25286936 | 2R | 8076293..8076449 | 3761..3917 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 8075472..8075609 | 3250..3387 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 8075665..8075790 | 3386..3511 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 8073125..8073236 | 2408..2519 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 8073366..8073471 | 2517..2622 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 8073597..8073704 | 2620..2727 | 525 | 99.1 | Plus |
| 2R | 25286936 | 2R | 8077728..8077829 | 3914..4015 | 510 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6893 | 2879..3043 | 219 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6910 | 2879..3045 | 170 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6857 | 2911..3043 | 165 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2517 | 2879..3066 | 164 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6857 | 2969..3082 | 154 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6853 | 1383..1450 | 153 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2815..2966 | 2879..3045 | 152 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6818 | 2969..3073 | 148 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1144 | 2972..3045 | 144 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2414 | 2969..3045 | 143 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6819 | 1383..1449 | 139 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2443 | 2911..3083 | 137 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1543..1587 | 2969..3013 | 135 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6878 | 2969..3082 | 135 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6799 | 1383..1450 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6778 | 1395..1450 | 120 | 70.2 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 684..725 | 3023..2982 | 120 | 76.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1513..1594 | 1384..1464 | 119 | 62.2 | Plus |
BS17672.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:32 Download gff for
BS17672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig-RB | 88..4086 | 17..4015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:07 Download gff for
BS17672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig-RE | 86..4084 | 17..4015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:46 Download gff for
BS17672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig-RB | 88..4086 | 17..4015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:32 Download gff for
BS17672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig-RE | 64..4062 | 17..4015 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:32 Download gff for
BS17672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8075860..8076108 | 3512..3760 | 100 | -> | Plus |
| 2R | 8076293..8076448 | 3761..3916 | 100 | -> | Plus |
| 2R | 8077731..8077829 | 3917..4015 | 100 | | Plus |
| 2R | 8075665..8075790 | 3386..3511 | 100 | -> | Plus |
| 2R | 8070335..8070512 | 398..575 | 100 | -> | Plus |
| 2R | 8070821..8072238 | 576..1993 | 100 | -> | Plus |
| 2R | 8069899..8070279 | 17..397 | 100 | -> | Plus |
| 2R | 8072363..8072778 | 1994..2409 | 100 | -> | Plus |
| 2R | 8073127..8073234 | 2410..2517 | 100 | -> | Plus |
| 2R | 8073367..8073471 | 2518..2622 | 100 | -> | Plus |
| 2R | 8073600..8073700 | 2623..2723 | 100 | -> | Plus |
| 2R | 8073974..8074500 | 2724..3250 | 100 | -> | Plus |
| 2R | 8075473..8075607 | 3251..3385 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:07 Download gff for
BS17672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3963170..3963295 | 3386..3511 | 100 | -> | Plus |
| arm_2R | 3957840..3958017 | 398..575 | 100 | -> | Plus |
| arm_2R | 3957404..3957784 | 17..397 | 100 | -> | Plus |
| arm_2R | 3958326..3959743 | 576..1993 | 100 | -> | Plus |
| arm_2R | 3959868..3960283 | 1994..2409 | 100 | -> | Plus |
| arm_2R | 3960632..3960739 | 2410..2517 | 100 | -> | Plus |
| arm_2R | 3960872..3960976 | 2518..2622 | 100 | -> | Plus |
| arm_2R | 3961105..3961205 | 2623..2723 | 100 | -> | Plus |
| arm_2R | 3961479..3962005 | 2724..3250 | 100 | -> | Plus |
| arm_2R | 3962978..3963112 | 3251..3385 | 100 | -> | Plus |
| arm_2R | 3963365..3963613 | 3512..3760 | 100 | -> | Plus |
| arm_2R | 3963798..3963953 | 3761..3916 | 100 | -> | Plus |
| arm_2R | 3965236..3965334 | 3917..4015 | 100 | | Plus |
BS17672.5prime Sequence
604 bp (476 high quality bases) assembled on 2007-05-29
> BS17672.5prime
GAAGTTATCAGTCGACATGAGCACACAAACTCGTTCAGGCGGCGGGGGAG
GCGGCGGCCATGCCCGCAACCAGAAAAAGTCAAATGCCAGCAACTCCGGC
GGAGGAGGAACCGGCCATCACGATGGAGTCTCACATGCTGCGGCCGCTGG
CAAGAAGGGAGGCCAGGATGCCAGCAAGACAGACAAGCCAGAGAAGGCCC
AGCCCAAGGCTACCACCGAACAGTTGCGCATTGCCCAGATCACCAATAGC
ACCACAGAGGATCCGCAGATCAACGAGAAGGTTCTCCTTCTTTTGACCAT
GACCCAACGTTCCGAGGAGGAGGTCTGCTGTGCCCTCAACGAGTGCGATT
ACGACCTGGAGGCCGCGGCCAACTTCTTGATCGAGGAGCTACCGCAGGGC
GCCTTTGCCAAGTACGAGAAAAAGCGCAAGAACAAGGCTGCAAATAACAC
GGCTGATGGTGCTGCTGGCGATGGCGATTGGGCCGATGGCAATGGCAATG
CGGACAGGCGGGAAAAGTCGCGAAACCGCAGCTCAAATCGCGGAGGCACC
CGTGGCTCCAGTGACAGTCGTGGATGGGCGCGAAGAGAGACTCGTGAGAA
TGAG
BS17672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8715-PC | 4032 | lig-RC | 1..561 | 17..577 | 2805 | 100 | Plus |
| CG8715-PD | 4128 | lig-RD | 1..561 | 17..577 | 2805 | 100 | Plus |
| CG8715-PA | 4032 | lig-RA | 1..561 | 17..577 | 2805 | 100 | Plus |
| CG8715-PB | 3999 | lig-RB | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lig-RL | 4835 | CG8715-RL | 64..651 | 17..604 | 2895 | 99.7 | Plus |
| lig-RK | 4835 | CG8715-RK | 64..651 | 17..604 | 2895 | 99.7 | Plus |
| lig-RJ | 5116 | CG8715-RJ | 71..658 | 17..604 | 2895 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8069899..8070280 | 17..398 | 1910 | 100 | Plus |
| 2R | 25286936 | 2R | 8070333..8070513 | 396..576 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:13:30 has no hits.
BS17672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:50 Download gff for
BS17672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8715-PB | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:06:42 Download gff for
BS17672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig-RI | 73..673 | 3..604 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:29 Download gff for
BS17672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig-RJ | 58..658 | 3..604 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:29 Download gff for
BS17672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8069886..8070279 | 3..397 | 98 | -> | Plus |
| 2R | 8070335..8070512 | 398..575 | 100 | -> | Plus |
| 2R | 8070821..8070849 | 576..604 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:06:42 Download gff for
BS17672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3957391..3957784 | 3..397 | 98 | -> | Plus |
| arm_2R | 3957840..3958017 | 398..575 | 100 | -> | Plus |
| arm_2R | 3958326..3958354 | 576..604 | 93 | | Plus |
BS17672.3prime Sequence
894 bp (818 high quality bases) assembled on 2007-05-29
> BS17672.3prime
ATGGTCTAGAAAGCTTCTAGTTCTGTCCGGCCCAGTACGAGGGCGAGTAG
CCTTGCTTGCCAGCAGACTTCGACTGGCTGGTCGACTGTTGACGCTGCCC
GGCACTGTTCGAGTCCTGGTGGATGGGCTGATGGATCATATTGTGGTGTC
CGGCCGCTGGCATCGGCAAGTACATGCCGTACGGTTGGGCAGAGGTGCCT
CCAGCCGTCTGAGTGTTGGGCATGTTAAACGGGGGCGGAGTGCCCGAATG
GAAACTCTGCTTCTCGTACGAATTAACCTTGTTCAGCGCCACGTGTCCTT
TTCCGTACATAGAAGAGGTCAGATCGGATCCAGTGCCTGCCTGCGACTGG
TTGGACACAGTCTGAGTTTTGCTCTGCTGATTCACGCTCGACGAGTAGCC
GCCCTTGCTGTAGTCCTGCGTGGTCTGCGACAGAGTGTCATAGCTGGTCG
AGCCGTAGCCCGCGCTATACGAAGGCTTCGGGAACTGTTGACCGGAGGCA
GTGTTTGCTGCCGGTATTTGTGGATATATGGCGGGCGTGCCATATTGAAA
ACTACCGGGCATTACATTGCCACCATAGAAGTAGGCGTAAGGAACATTTA
GCATGGGCGCACTTGAGCCAGCCTGTTGCGACATTGTGCTGGAGACATTG
CCGACCGGACTGGAGTTATTGTCAGTGCGGGCAAAGCGTCCATCATTCAT
AGCAGAATACGTCACAGAGCCGAGGTTGTCACGTCCAGCTCCTAAACTGG
CCGGCGGATAGTTCAGATCGTAATATCCCTGCACATGTGGCACTCTCTGT
TGCATCATTTGCAATTCCTCGTAGGAATACACTGGTTGCTGATAGTATGG
CAATCCAGTCTGAATATATTGACTAACCATTTGGATGTGGGTGG
BS17672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8715-PB | 3999 | lig-RB | 3122..3999 | 894..17 | 4365 | 99.8 | Minus |
| CG8715-PD | 4128 | lig-RD | 3122..3901 | 894..115 | 3875 | 99.8 | Minus |
| CG8715-PC | 4032 | lig-RC | 3122..3900 | 894..116 | 3870 | 99.8 | Minus |
| CG8715-PA | 4032 | lig-RA | 3122..3900 | 894..116 | 3870 | 99.8 | Minus |
| CG8715-PC | 4032 | lig-RC | 3933..4032 | 116..17 | 500 | 100 | Minus |
| CG8715-PA | 4032 | lig-RA | 3933..4032 | 116..17 | 500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lig-RL | 4835 | CG8715-RL | 2972..3849 | 894..17 | 4375 | 99.9 | Minus |
| lig-RK | 4835 | CG8715-RK | 2972..3849 | 894..17 | 4375 | 99.9 | Minus |
| lig-RG | 5114 | CG8715-RG | 3251..4128 | 894..17 | 4375 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8075860..8076108 | 520..272 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 8076293..8076449 | 271..115 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 8075472..8075609 | 782..645 | 690 | 100 | Minus |
| 2R | 25286936 | 2R | 8075665..8075790 | 646..521 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 8074388..8074500 | 894..782 | 550 | 99.1 | Minus |
| 2R | 25286936 | 2R | 8077728..8077829 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:24:18 has no hits.
BS17672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:46 Download gff for
BS17672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8715-PB | 3122..3999 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:39:41 Download gff for
BS17672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig-RF | 3209..4089 | 11..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:43 Download gff for
BS17672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig-RG | 3251..4131 | 11..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:43 Download gff for
BS17672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8075860..8076108 | 272..520 | 100 | -> | Minus |
| 2R | 8076293..8076448 | 116..271 | 100 | -> | Minus |
| 2R | 8077731..8077832 | 11..115 | 97 | | Minus |
| 2R | 8074388..8074500 | 782..894 | 99 | -> | Minus |
| 2R | 8075473..8075607 | 647..781 | 100 | -> | Minus |
| 2R | 8075665..8075790 | 521..646 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:39:41 Download gff for
BS17672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3961893..3962005 | 782..894 | 99 | -> | Minus |
| arm_2R | 3962978..3963112 | 647..781 | 100 | -> | Minus |
| arm_2R | 3963170..3963295 | 521..646 | 100 | -> | Minus |
| arm_2R | 3963365..3963613 | 272..520 | 100 | -> | Minus |
| arm_2R | 3963798..3963953 | 116..271 | 100 | -> | Minus |
| arm_2R | 3965236..3965337 | 11..115 | 97 | | Minus |
BS17672.pep Sequence
Translation from 16 to 4014
> BS17672.pep
MSTQTRSGGGGGGGHARNQKKSNASNSGGGGTGHHDGVSHAAAAGKKGGQ
DASKTDKPEKAQPKATTEQLRIAQITNSTTEDPQINEKVLLLLTMTQRSE
EEVCCALNECDYDLEAAANFLIEELPQGAFAKYEKKRKNKAANNTADGAA
GDGDWADGNGNADRREKSRNRSSNRGGTRGSSDSRGWRGRETRENERNQR
ESREPWSGQNAGQDRGDDRANDNYRGQRNGGGRSGPGGGGRGGGFVSRSG
RGGGRMGGRTGGPRGDRGSGGPGGAYGSGRGGNANEDHHEVELWDNTIAQ
NAEKQQQAHDDAWGDWNNEEYEGSLKDSKVFTTSNLATQSAANVVSGTGA
SVTAVPAAAGTEISAPPGLEHQLVQQGSHLEESSSSGPAAVTPPATLSGS
ATTPLLQYSAAVSNPPPQLQSQGTQSGAGTGASAAAGGGAGSTPSSFVSA
SPDTFSSAASAAATLVHQAQKQQQLQQQTTPIKPSATLSVEQSQYFNSLA
SQGVSPGSVPVQSAPAGYAQNPVAAYSQTSTSVGVSQYPNTYANVFASGT
AAGAGTAEQSQQQPQIRRARVKLPPPSKIPASAVEMPGDNALNNIGYLDV
QFGALDFGTDDGFEPLPEKVGSGFSIDGQQQQQQPDDYQSKSQQQQQVTL
AAGLQSSQISDALNAAGYTSRSTSQQQQGVSSAVNATIDQLTKSDPYGQT
GGSGNAYQNAYQSSGASKTASGFPTTAPGGYSSSTYANVQSSVANSYQQQ
GYGSYQPSSYQQQAGSGAQSGTGAVSGGGGTATQNIPVGGSSSQNSTSGN
ASSAYLTSGYSTPQSAYQSSQSVYGNTGLSNSSGFSGSASNASSQYANFS
ASAKLKDATTASSAAHYDSVSTSSGVSSNSGSTGNGGVVSGQTGANQAAV
SNNNSVSGSSSVSNVTAGVASGNVAGVGGGVSQSGVSSGVGVPGGSASSV
GVNVNNNSSSASSVGAATVAQTATGTTAAVLASLTNKNTSSSNSSGSGGS
AATTTGNASGQGAGASTGGVGSSSGAGGAGSGGGSGSGLVPTNIQMVSQY
IQTGLPYYQQPVYSYEELQMMQQRVPHVQGYYDLNYPPASLGAGRDNLGS
VTYSAMNDGRFARTDNNSSPVGNVSSTMSQQAGSSAPMLNVPYAYFYGGN
VMPGSFQYGTPAIYPQIPAANTASGQQFPKPSYSAGYGSTSYDTLSQTTQ
DYSKGGYSSSVNQQSKTQTVSNQSQAGTGSDLTSSMYGKGHVALNKVNSY
EKQSFHSGTPPPFNMPNTQTAGGTSAQPYGMYLPMPAAGHHNMIHQPIHQ
DSNSAGQRQQSTSQSKSAGKQGYSPSYWAGQN*
BS17672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lig-PG | 1332 | CG8715-PG | 1..1332 | 1..1332 | 6857 | 100 | Plus |
| lig-PF | 1332 | CG8715-PF | 1..1332 | 1..1332 | 6857 | 100 | Plus |
| lig-PE | 1332 | CG8715-PE | 1..1332 | 1..1332 | 6857 | 100 | Plus |
| lig-PB | 1332 | CG8715-PB | 1..1332 | 1..1332 | 6857 | 100 | Plus |
| lig-PA | 1343 | CG8715-PA | 1..1343 | 1..1332 | 6835 | 99.2 | Plus |
