Clone BS17673 Report

Search the DGRC for BS17673

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG1677-RA
Protein status:BS17673.pep: full length peptide match
Sequenced Size:3035

Clone Sequence Records

BS17673.complete Sequence

3035 bp assembled on 2009-12-08

GenBank Submission: KX806185

> BS17673.complete
GAAGTTATCAGTCGACATGGTCCTTGACATGGAATCGGACGATTCTCATG
CCAGTTCGGCGTCCAATTCCTCGGAGTCACGGTCGAATTCGCCCACCAAC
GACAAGGATGAAGTTGTCGCGGATCATGGTGGCGAATCGCCTGGCGGAGG
TGGCGACCCCATACTGGATCGGTCCGATCGAGCCCCCTCCACCAGTAGCT
CATCGTCCAACTCCAGTTCCAGTTCGAATCGCAGTGACCTGTCCAAGAAG
CAGAAGAAGAGCTCGAGCAGCAGCAGCGGAAGTGGCAGTGGCAGTGGCAG
TAGCTCTTCCAGCGGCTCCTCTAGCGAGGATGAGGGCGATCAGGAACCGG
AACAGGAGGTGCAGCGTCTTTCCGAGCAGCAACGGGAGCAGCAGCAGCAT
TCGCCGATAAATGAGCGAGAGTCCGAGTCTGCTGCTGGAACGCCTGTTAA
TGCGGATCAACCTGGTTCGCCAAACGCTAAGTCACAGCCTAGCTCGTTCC
TCTCATCCGTTCGCAGTCGAAGCGTCAGTCCCCAGCTGTACAATCAGGCT
GCCGTGGATCTGAATATCAGTCACGACGACCTTAGCGATGTCAGCGACAT
CGAGGGTGAGGAGAAGCGAACCTCATCCAAAAATTCAATGCGTCCGGCGG
ATGAGAACGAGGATGGCGCCATTTCCAATGATTCACTGCCCACTCTCGGC
GAAGAGGATGAGGTTGAGCAAAAGCAGTCCACGCCTAACGGCAAAGCGTC
AAGCGGGGATGAGAAGGAGCCTTTCGCAAAAGAAACCCATACCGACGACG
CGTCCAATGGACTTGCACCAGCGACCGCTTTGCAGGAGGACTTGGTCAAA
ACTCATGACGACGACGCCTTGGACTTCGAGGCGGAAGAGGGCGAGTGTCC
GGAGCAGGCAAAGGAGCCTTCACCGATGGAGAGCACAGCCAACGAAACAA
ACCAGACCAAGAGTACGACCAAGGTGTCGCAAGACGAGGGCGATGACGAC
GGCGAGGTGGATAAAGACGGCGATGATAAAGACGGCGATGACAAAGACAC
ACGCAAGGATGGCGCTGGCAATGGCTGCTTGGAGGATGGCGCAGGCAATG
ACAGCCGGAAGGACGACGCAGGCAATGGCTGCCTGGAGGAAGGCGAGGAG
GAAAAAGATATAGTGTCGGTGTCGACTTCATCCAGCCAGGAAAAAGTGGA
AGAGGGGGAGCTGGAGGAGGGCGAGGTGTCCGATGAGGATGAAAAGCGAC
CGGAGGAGACTGAACCGAAGCCGGTGTGTCGATTCTACACTCGGGGTCAG
TGCACCTGGGGGATGAGCTGCCGCTTCCTGCATCCTGGCGTCACAGACAA
GGGCAACTACACAATGTTCGACAACGTTATACGGCCGGTCCCGATGCAGG
GAGGTTCAACTGGAGCCAGCGCCCCAGCAGCCCCATCATCGACCGCTGCC
CCTCGTGCCGGAGGGAGTGCCTATAGTTCCCACGCCTCGGCGACTGCTGA
CTATCATGATTATCGAACTGAGCGGCCATTGCATCACCGACCGCCGCTCC
TTCATGCGCCCAGTATTTATGGTGCACCCGTCCACGACGCCCGCACTCTT
TTGCCTGACGGAGCTCCGGTGGTGGTGGAGAATGCCTGGGAGCGCGGCCT
GCGCACCGCTAAGGAGATGATGCGAAAAGCCAACAAACGCAAGGAGCAGG
ACATGGACTTTGAGGACAAGAAGATGAACCTAACACTGTCGCCCGATGAA
ATGGAGAAGGATTCGTACTACCTCAAGGATCGGGGCGGTAGCAGCGCCCG
ATCACCGCCGCCTCCTTCGGCCAATGTGCGCGAACAGCCACTCAATCCAC
TCAGTATGCCTCTGTCCATGCATCCGCATGCCGTTGCCCATGCAAATCCT
CGTGCTCTTCTGCCCTTGCAGTACTCCGTTTACGGACCGCCACCCGATCG
CTACGGCCGACCTCAGTATATGCCACCGCAGTACGATGATGTGGATGCGT
ACGGCCGTATGACTAGATATCGCGAATTGCCGCCCCACCGGATGCCGCAC
TATGAGGACGATCGCCGTTCGAGACCAACGCGCGAGGTCATCGTACAGCG
TGTGGAGGCCGCTGGACGTGGTGATGAGTGGAGTGATCCCTGGATGCGAT
CCAAGTCCGTTGGCCGGGGATCATATGAACGCGAGGATCGCCGCCGTCGA
GATAGGCGCAGCTACAGCAGCAACTCGTCGTATTCCACCTCGAACAGTTC
GCAGAGTGACTCCAGCTCGGACTCGTCGCGCTCAAGCAGTCCGTCCGATC
ATAAGCGGCGCTACGGTTCGCACAAACTAGCAACCGCGACCGCTACTTCA
CGCCGCCATGGCGGTCGTGCGGCCCGTTCGCCCAGCCAGATACCGCGACG
CCCCCGGCGCACTTCCAAGGGAAGCCTTTCGCCTTCATATAAGAGACCAG
CTGTGGACAAGCGTGGCGTTGGACACAGTCCGTCTTCCAAGCGTAAGAAG
CTGTCGTCGCCAGCACCCAAGAAGTTTGACAAGTTGCGACGCCGTCGCAG
CTCGAGTTCTTCAGACTCAGACTCATCGGATACGTCGTACTCCGATTCGG
AATCGGGATCGTCGTCGTCGGACAGCTCGTCGGGATCAAGAGAAACGCCC
CAGAAGCGTGTGAGGGCCACCGACAAGGCGCTCAACGAGCGGAAGCTTAT
TAGCAAGCCAGCTGAACAATCAACCAAGAAGCGCTCGCCTATTTCCATTG
AGATTAAGAAAACATCAAACATGGTTGGTGTTTCGGCGTTGGCCTCAGCC
AGCAACTCAGCCGACTCCGATGCGGAGAAGGATCACGATAACGGTAAGGA
CAAGGAAAAGGATCACGTTAAGGAGAAAGACAAGGATTGCAAAGAGAAGG
ACAAGGATAAGGACGGCATGAAGGACAAAGAAGGCAAAAAGTCACGCCGT
GAGGAGCTGCTGAAGCAATTGCGCGCCGTCGAGGATGCGATCGCCAAGAA
GCGTTCCAAGCTAAACTGAAAGCTTTCTAGACCAT

BS17673.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1677-RC 3003 CG1677-PC 1..3003 17..3019 15015 100 Plus
CG1677-RB 3003 CG1677-PB 1..3003 17..3019 15015 100 Plus
CG1677-RA 3003 CG1677-PA 1..3003 17..3019 15015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1677-RC 3461 CG1677-RC 108..3111 16..3019 15020 100 Plus
CG1677-RB 4077 CG1677-RB 724..3727 16..3019 15020 100 Plus
CG1677-RA 3679 CG1677-RA 326..3329 16..3019 15020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7282242..7283868 2417..791 8135 100 Minus
X 23542271 X 7283941..7284715 790..16 3875 100 Minus
X 23542271 X 7281439..7281749 3019..2709 1555 100 Minus
X 23542271 X 7282024..7282176 2570..2418 765 100 Minus
X 23542271 X 7281823..7281962 2708..2569 700 100 Minus
Blast to na_te.dros performed 2014-11-28 02:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 639..774 400..268 159 60.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6858 260..399 134 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2566..2644 321..399 124 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6759..6866 339..447 119 57.8 Plus

BS17673.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:19 Download gff for BS17673.complete
Subject Subject Range Query Range Percent Splice Strand
CG1677-RA 325..3326 17..3018 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:27 Download gff for BS17673.complete
Subject Subject Range Query Range Percent Splice Strand
CG1677-RA 327..3328 17..3018 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:14 Download gff for BS17673.complete
Subject Subject Range Query Range Percent Splice Strand
CG1677-RA 325..3326 17..3018 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:48 Download gff for BS17673.complete
Subject Subject Range Query Range Percent Splice Strand
CG1677-RA 327..3328 17..3018 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:48 Download gff for BS17673.complete
Subject Subject Range Query Range Percent Splice Strand
X 7281440..7281749 2709..3018 100 <- Minus
X 7281823..7281960 2571..2708 100 <- Minus
X 7282024..7282176 2418..2570 100 <- Minus
X 7282242..7283868 791..2417 100 <- Minus
X 7283941..7284714 17..790 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:27 Download gff for BS17673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7175473..7175782 2709..3018 100 <- Minus
arm_X 7175856..7175993 2571..2708 100 <- Minus
arm_X 7176057..7176209 2418..2570 100 <- Minus
arm_X 7176275..7177901 791..2417 100 <- Minus
arm_X 7177974..7178747 17..790 100   Minus

BS17673.3prime Sequence

899 bp (758 high quality bases) assembled on 2007-05-29

> BS17673.3prime
ATGGTCTAGAAAGCTTTCAGTTTAGCTTGGAACGCTTCTTGGCGATCGCA
TCCTCGACGGCGCGCAATTGCTTCAGCAGCTCCTCACGGCGTGACTTTTT
GCCTTCTTTGTCCTTCATGCCGTCCTTATCCTTGTCCTTCTCTTTGCAAT
CCTTGTCTTTCTCCTTAACGTGATCCTTTTCCTTGTCCTTACCGTTATCG
TGATCCTTCTCCGCATCGGAGTCGGCTGAGTTGCTGGCTGAGGCCAACGC
CGAAACACCAACCATGTTTGATGTTTTCTTAATCTCAATGGAAATAGGCG
AGCGCTTCTTGGTTGATTGTTCAGCTGGCTTGCTAATAAGCTTCCGCTCG
TTGAGCGCCTTGTCGGTGGCCCTCACACGCTTCTGGGGCGTTTCTCTTGA
TCCCGACGAGCTGTCCGACGACGACGATCCCGATTCCGAATCGGAGTACG
ACGTATCCGATGAGTCTGAGTCTGAAGAACTCGAGCTGCGACGGCGTCGC
AACTTGTCAAACTTCTTGGGTGCTGGCGACGACAGCTTCTTACGCTTGGA
AGACGGACTGTGTCCAACGCCACGCTTGTCCACAGCTGGTCTCTTATATG
AAGGCGAAAGGCTTCCCTTGGAAGTGCGCCGGGGGCGTCGCGGTATCTGG
CTGGGCGAACGGGCCGCACGACCGCCATGGCGGCGTGAAGTAGCGGTCGC
GGTTGCTAGTTTGTGCGAACCGTAGCGCCGCTTATGATCGGACGGACTGC
TTGAGCGCGACGAGTCCGAGCTGGAGTCACTCTGCGAACTGTTCGAGGTG
GAATACGACGAGTTGCTGCTGTAGCTGCGCCTATCTCGACGGCGGCGATC
CTCGCGTTCATATGATCCCCGGCCAACGGACTTGGATCGCATCCAGGGA

BS17673.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1677-PA 3003 CG1677-RA 2121..3003 899..17 4415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1677-RC 3461 CG1677-RC 2229..3111 899..17 4415 100 Minus
CG1677-RB 4077 CG1677-RB 2845..3727 899..17 4415 100 Minus
CG1677-RA 3679 CG1677-RA 2447..3329 899..17 4415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7281439..7281749 17..327 1555 100 Plus
X 23542271 X 7282242..7282522 619..899 1405 100 Plus
X 23542271 X 7282024..7282176 466..618 765 100 Plus
X 23542271 X 7281823..7281962 328..467 700 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:33:34 has no hits.

BS17673.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:56 Download gff for BS17673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1677-PA 2122..3003 17..898 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:19:47 Download gff for BS17673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1677-RA 2448..3340 8..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:01 Download gff for BS17673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1677-RA 2448..3340 8..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:01 Download gff for BS17673.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7281428..7281749 8..327 99 <- Plus
X 7281823..7281960 328..465 100 <- Plus
X 7282024..7282176 466..618 100 <- Plus
X 7282242..7282521 619..898 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:19:47 Download gff for BS17673.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7175461..7175782 8..327 99 <- Plus
arm_X 7175856..7175993 328..465 100 <- Plus
arm_X 7176057..7176209 466..618 100 <- Plus
arm_X 7176275..7176554 619..898 100   Plus

BS17673.5prime Sequence

775 bp (740 high quality bases) assembled on 2007-05-29

> BS17673.5prime
GAAGTTATCAGTCGACATGGTCCTTGACATGGAATCGGACGATTCTCATG
CCAGTTCGGCGTCCAATTCCTCGGAGTCACGGTCGAATTCGCCCACCAAC
GACAAGGATGAAGTTGTCGCGGATCATGGTGGCGAATCGCCTGGCGGAGG
TGGCGACCCCATACTGGATCGGTCCGATCGAGCCCCCTCCACCAGTAGCT
CATCGTCCAACTCCAGTTCCAGTTCGAATCGCAGTGACCTGTCCAAGAAG
CAGAAGAAGAGCTCGAGCAGCAGCAGCGGAAGTGGCAGTGGCAGTGGCAG
TAGCTCTTCCAGCGGCTCCTCTAGCGAGGATGAGGGCGATCAGGAACCGG
AACAGGAGGTGCAGCGTCTTTCCGAGCAGCAACGGGAGCAGCAGCAGCAT
TCGCCGATAAATGAGCGAGAGTCCGAGTCTGCTGCTGGAACGCCTGTTAA
TGCGGATCAACCTGGTTCGCCAAACGCTAAGTCACAGCCTAGCTCGTTCC
TCTCATCCGTTCGCAGTCGAAGCGTCAGTCCCCAGCTGTACAATCAGGCT
GCCGTGGATCTGAATATCAGTCACGACGACCTTAGCGATGTCAGCGACAT
CGAGGGTGAGGAGAAGCGAACCTCATCCAAAAATTCAATGCGTCCGGCGG
ATGAGAACGAGGATGGCGCCATTTCCAATGATTCACTGCCCACTCTCGGC
GAAGAGGATGAGGTTGAGCAAAAGCAGTCCACGCCTAACGGCAAAGCGTC
AAGCGGGGATGAGAAGGAGCCTTTC

BS17673.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1677-PA 3003 CG1677-RA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1677-RD 4100 CG1677-RD 750..1509 16..775 3800 100 Plus
CG1677-RC 3461 CG1677-RC 108..867 16..775 3800 100 Plus
CG1677-RB 4077 CG1677-RB 724..1483 16..775 3800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7283956..7284715 775..16 3800 100 Minus
Blast to na_te.dros performed 2015-02-12 23:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 639..774 400..268 159 60.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6858 260..399 134 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2566..2644 321..399 124 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6759..6866 339..447 119 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2763..2873 307..418 107 56.2 Plus

BS17673.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:18:00 Download gff for BS17673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1677-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:26 Download gff for BS17673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1677-RB 724..1483 16..775 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:00 Download gff for BS17673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1677-RB 724..1483 16..775 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:00 Download gff for BS17673.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7283956..7284715 16..775 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:26 Download gff for BS17673.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7177989..7178748 16..775 100   Minus

BS17673.pep Sequence

Translation from 16 to 3018

> BS17673.pep
MVLDMESDDSHASSASNSSESRSNSPTNDKDEVVADHGGESPGGGGDPIL
DRSDRAPSTSSSSSNSSSSSNRSDLSKKQKKSSSSSSGSGSGSGSSSSSG
SSSEDEGDQEPEQEVQRLSEQQREQQQHSPINERESESAAGTPVNADQPG
SPNAKSQPSSFLSSVRSRSVSPQLYNQAAVDLNISHDDLSDVSDIEGEEK
RTSSKNSMRPADENEDGAISNDSLPTLGEEDEVEQKQSTPNGKASSGDEK
EPFAKETHTDDASNGLAPATALQEDLVKTHDDDALDFEAEEGECPEQAKE
PSPMESTANETNQTKSTTKVSQDEGDDDGEVDKDGDDKDGDDKDTRKDGA
GNGCLEDGAGNDSRKDDAGNGCLEEGEEEKDIVSVSTSSSQEKVEEGELE
EGEVSDEDEKRPEETEPKPVCRFYTRGQCTWGMSCRFLHPGVTDKGNYTM
FDNVIRPVPMQGGSTGASAPAAPSSTAAPRAGGSAYSSHASATADYHDYR
TERPLHHRPPLLHAPSIYGAPVHDARTLLPDGAPVVVENAWERGLRTAKE
MMRKANKRKEQDMDFEDKKMNLTLSPDEMEKDSYYLKDRGGSSARSPPPP
SANVREQPLNPLSMPLSMHPHAVAHANPRALLPLQYSVYGPPPDRYGRPQ
YMPPQYDDVDAYGRMTRYRELPPHRMPHYEDDRRSRPTREVIVQRVEAAG
RGDEWSDPWMRSKSVGRGSYEREDRRRRDRRSYSSNSSYSTSNSSQSDSS
SDSSRSSSPSDHKRRYGSHKLATATATSRRHGGRAARSPSQIPRRPRRTS
KGSLSPSYKRPAVDKRGVGHSPSSKRKKLSSPAPKKFDKLRRRRSSSSSD
SDSSDTSYSDSESGSSSSDSSSGSRETPQKRVRATDKALNERKLISKPAE
QSTKKRSPISIEIKKTSNMVGVSALASASNSADSDAEKDHDNGKDKEKDH
VKEKDKDCKEKDKDKDGMKDKEGKKSRREELLKQLRAVEDAIAKKRSKLN
*

BS17673.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1677-PC 1000 CG1677-PC 1..1000 1..1000 5179 100 Plus
CG1677-PB 1000 CG1677-PB 1..1000 1..1000 5179 100 Plus
CG1677-PA 1000 CG1677-PA 1..1000 1..1000 5179 100 Plus
CG1677-PD 999 CG1677-PD 1..999 1..1000 5163 99.9 Plus
Muc68D-PB 1514 CG6004-PB 320..1195 10..878 226 18.8 Plus