Clone Sequence Records
BS17675.complete Sequence
863 bp assembled on 2010-02-09
GenBank Submission: KX803517
> BS17675.complete
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGTAATAGCCAATATGAGTGATAGTGATGAGT
TGTACACCAGGCTGAGCGGTTTTCCCATGCAGGACAAGGGCATCCTGCCG
GACTCGATGGGTCGTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGT
CCATCGTTCGCATCGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGC
TAATGAACCACCTGACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTC
CTGCACACGCTGACCACCAATCAACCTGCCATATTTTTCTACGAGAAGAG
AAGATTTACGCTTCACTCATTCCTGCCCTACTACTACAATATACGGGGCA
AGGGCAAGGACGGATTCACCTATGTGAACTACATTAACGGCGGCCATCCA
CCCTGGACTTTATTAGATCACATCAAGCACTACGCGTCGATGGTGCGCCA
CACCAGCAGCCTTTGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGC
GGTGGTTCTACCACAAGCTGCTCACTCGCTTCAACTTTATCGAGTGAAAG
CTTTCTAGACCAT
BS17675.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RA | 831 | CG18177-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Naa60-RB | 768 | CG18177-PB | 302..768 | 381..847 | 2335 | 100 | Plus |
Naa60-RC | 720 | CG18177-PC | 302..640 | 381..719 | 1680 | 99.7 | Plus |
Naa60-RB | 768 | CG18177-PB | 1..304 | 17..320 | 1520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RA | 2294 | CG18177-RA | 659..1490 | 17..848 | 4160 | 100 | Plus |
Naa60-RB | 2231 | CG18177-RB | 960..1427 | 381..848 | 2340 | 100 | Plus |
Naa60-RC | 1378 | CG18177-RC | 960..1298 | 381..719 | 1680 | 99.7 | Plus |
Naa60-RB | 2231 | CG18177-RB | 659..962 | 17..320 | 1520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9727983..9728433 | 153..603 | 2255 | 100 | Plus |
3L | 28110227 | 3L | 9728713..9728846 | 715..848 | 670 | 100 | Plus |
3L | 28110227 | 3L | 9727787..9727909 | 34..156 | 615 | 100 | Plus |
3L | 28110227 | 3L | 9728502..9728619 | 602..719 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:08:10 has no hits.
BS17675.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:13 Download gff for
BS17675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-RA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:31 Download gff for
BS17675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-RA | 624..1453 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:16 Download gff for
BS17675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RA | 659..1488 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:13 Download gff for
BS17675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-RA | 617..1458 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:39 Download gff for
BS17675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RA | 659..1488 | 17..846 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:39 Download gff for
BS17675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9727553..9727569 | 17..33 | 100 | -> | Plus |
3L | 9727787..9727907 | 34..154 | 100 | -> | Plus |
3L | 9727985..9728433 | 155..603 | 100 | -> | Plus |
3L | 9728504..9728616 | 604..716 | 99 | -> | Plus |
3L | 9728715..9728844 | 717..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:16 Download gff for
BS17675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9720653..9720669 | 17..33 | 100 | -> | Plus |
arm_3L | 9720887..9721007 | 34..154 | 100 | -> | Plus |
arm_3L | 9721085..9721533 | 155..603 | 100 | -> | Plus |
arm_3L | 9721604..9721716 | 604..716 | 99 | -> | Plus |
arm_3L | 9721815..9721944 | 717..846 | 100 | | Plus |
BS17675.3prime Sequence
861 bp (825 high quality bases) assembled on 2007-05-29
> BS17675.3prime
ATGGTCTAGAAAGCTTTCACTCGATAAAGTTGAAGCGAGTGAGCAGCTTG
TGGTAGAACCACCGCACCACCTGCTGGACTCGTCCGGCCAGCCAGGCGCA
AAGGCTGCTGGTGTGGCGCACCATCGACGCGTAGTGCTTGATGTGATCTA
ATAAAGTCCAGGGTGGATGGCCGCCGTTAATGTAGTTCACATAGGTGAAT
CCGTCCTTGCCCTTGCCCCGTATATTGTAGTAGTAGGGCAGGAATGAGTG
AAGCGTAAATCTTCTCTTCTCGTAGAAAAATATGGCAGGTTGATTGGTGG
TCAGCGTGTGCAGGAAGATCGCCTTCACCGAATGCCGCTCGGCCGTCGTC
AGGTGGTTCATTAGCGCGTCCAACAGCAGCGATCCGATGCCATTGCGTCG
ATGCGAACGATGGACGCCCAGCGACAGTATATAACCGACATCGGCGGAAC
GACCCATCGAGTCCGGCAGGATGCCCTTGTCCTGCATGGGAAAACCGCTC
AGCCTGGTGTACAACTCATCACTATCACTCATATTGGCTATTACCTCCTT
GTTCACATTTCGATAGGGTTTGATTTCGGCAACGATTAAACCAATTATGG
CCAGATTATATACAGCTGCCAGCGCAAAGAAGCGCGTGCTTGAGGTAATA
TCCTCATACCATGATAGTGGATAGTCGATTGGAAACCATTCTTGGCACAG
CTGTCGCACCTCCGTCAGATCGTCGGGCACCAGGAACCTTAGCTGCACAT
CGTTAATCGAGCACAGCGGTACGTGTTCGCAGTCCACACGCGTACTCTCG
CTACTGGGCGGCGCACTGTGTTTGTTGTAGAGTGTGAATTGTGCCATGTC
GACTGATAACT
BS17675.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18177-PA | 831 | CG18177-RA | 1..831 | 847..17 | 4155 | 100 | Minus |
CG18177-PB | 768 | CG18177-RB | 302..768 | 483..17 | 2335 | 100 | Minus |
CG18177-PB | 768 | CG18177-RB | 1..304 | 847..544 | 1520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RA | 2294 | CG18177-RA | 659..1490 | 847..16 | 4160 | 100 | Minus |
Naa60-RB | 2231 | CG18177-RB | 960..1427 | 483..16 | 2340 | 100 | Minus |
Naa60-RC | 1378 | CG18177-RC | 960..1298 | 483..145 | 1680 | 99.7 | Minus |
Naa60-RB | 2231 | CG18177-RB | 659..962 | 847..544 | 1520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9727983..9728433 | 711..261 | 2255 | 100 | Minus |
3L | 28110227 | 3L | 9728713..9728846 | 149..16 | 670 | 100 | Minus |
3L | 28110227 | 3L | 9727787..9727909 | 830..708 | 615 | 100 | Minus |
3L | 28110227 | 3L | 9728502..9728619 | 262..145 | 575 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:24:29 has no hits.
BS17675.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:18:15 Download gff for
BS17675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-PA | 1..831 | 17..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:39:44 Download gff for
BS17675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RA | 652..1493 | 12..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:51 Download gff for
BS17675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RA | 652..1493 | 12..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:51 Download gff for
BS17675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9728715..9728849 | 12..147 | 98 | | Minus |
3L | 9727787..9727907 | 710..830 | 100 | -> | Minus |
3L | 9727985..9728433 | 261..709 | 100 | -> | Minus |
3L | 9728504..9728616 | 148..260 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:39:44 Download gff for
BS17675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9720887..9721007 | 710..830 | 100 | -> | Minus |
arm_3L | 9721085..9721533 | 261..709 | 100 | -> | Minus |
arm_3L | 9721604..9721716 | 148..260 | 99 | -> | Minus |
arm_3L | 9721815..9721949 | 12..147 | 98 | | Minus |
BS17675.5prime Sequence
845 bp (780 high quality bases) assembled on 2007-05-29
> BS17675.5prime
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGTAATAGCCAATATGAGTGATAGTGATGAGT
TGTACACCAGGCTGAGCGGTTTTCCCATGCAGGACAAGGGCATCCTGCCG
GACTCGATGGGTCGTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGT
CCATCGTTCGCATCGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGC
TAATGAACCACCTGACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTC
CTGCACACGCTGACCACCAATCAACCTGCCATATTTTTCTACGAGAAGAG
AAGATTTACGCTTCACTCATTCCTGCCCTACTACTACAATATACGGGGCA
AGGGCAAGGACGGATTCACCTATGTGAACTACATTAACGGCGGCCATCCA
CCCTGGACTTTATTAGATCACATCAAGCACTACGCGTCGATGGTGCGCCA
CACCAGCAGCCTTTGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGC
GGTGGTTCTACCACAAGCTGCTCACTCGCTTTCACTTTATCGAGT
BS17675.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18177-PA | 831 | CG18177-RA | 1..829 | 17..845 | 4095 | 99.7 | Plus |
CG18177-PB | 768 | CG18177-RB | 302..766 | 381..845 | 2275 | 99.5 | Plus |
CG18177-PB | 768 | CG18177-RB | 1..304 | 17..320 | 1520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RA | 2294 | CG18177-RA | 659..1487 | 17..845 | 4115 | 99.8 | Plus |
Naa60-RB | 2231 | CG18177-RB | 960..1424 | 381..845 | 2295 | 99.6 | Plus |
Naa60-RC | 1378 | CG18177-RC | 960..1298 | 381..719 | 1680 | 99.7 | Plus |
Naa60-RB | 2231 | CG18177-RB | 659..962 | 17..320 | 1520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9727983..9728433 | 153..603 | 2255 | 100 | Plus |
3L | 28110227 | 3L | 9728713..9728843 | 715..845 | 625 | 98.5 | Plus |
3L | 28110227 | 3L | 9727787..9727909 | 34..156 | 615 | 100 | Plus |
3L | 28110227 | 3L | 9728502..9728619 | 602..719 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:57:40 has no hits.
BS17675.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:18:20 Download gff for
BS17675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:55:54 Download gff for
BS17675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RA | 652..1487 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:34 Download gff for
BS17675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RA | 652..1487 | 9..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:34 Download gff for
BS17675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9727787..9727907 | 34..154 | 100 | -> | Plus |
3L | 9727985..9728433 | 155..603 | 100 | -> | Plus |
3L | 9728504..9728616 | 604..716 | 99 | -> | Plus |
3L | 9728715..9728843 | 717..845 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:55:54 Download gff for
BS17675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9720887..9721007 | 34..154 | 100 | -> | Plus |
arm_3L | 9721085..9721533 | 155..603 | 100 | -> | Plus |
arm_3L | 9721604..9721716 | 604..716 | 99 | -> | Plus |
arm_3L | 9721815..9721943 | 717..845 | 98 | | Plus |
BS17675.pep Sequence
Translation from 16 to 846
> BS17675.pep
MAQFTLYNKHSAPPSSESTRVDCEHVPLCSINDVQLRFLVPDDLTEVRQL
CQEWFPIDYPLSWYEDITSSTRFFALAAVYNLAIIGLIVAEIKPYRNVNK
EVIANMSDSDELYTRLSGFPMQDKGILPDSMGRSADVGYILSLGVHRSHR
RNGIGSLLLDALMNHLTTAERHSVKAIFLHTLTTNQPAIFFYEKRRFTLH
SFLPYYYNIRGKGKDGFTYVNYINGGHPPWTLLDHIKHYASMVRHTSSLC
AWLAGRVQQVVRWFYHKLLTRFNFIE*
BS17675.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-PA | 276 | CG18177-PA | 1..276 | 1..276 | 1476 | 100 | Plus |
Naa60-PB | 255 | CG18177-PB | 1..255 | 1..276 | 1338 | 92.4 | Plus |
Naa60-PC | 239 | CG18177-PC | 1..218 | 1..239 | 1102 | 89.1 | Plus |