Clone Sequence Records
BS17676.complete Sequence
2798 bp assembled on 2009-12-07
GenBank Submission: KX806307
> BS17676.complete
GAAGTTATCAGTCGACATGATAAATACGGCCAAGTACTTTGCTCTTCTAG
AGAGTTTAAGGTTTAGTAAAGCTCTAGCAAATACGGCGAATAACTCAGGG
ACTGCCGAAGCCTTGGAAATCAACCTGCGAATTTTGGAAAAATATGCTAA
ACTCGAGATTGGTCAGCAATTGCATGAGCTGTGCCTGGAATATCAGTTAA
CAGACGATCACGAATCTAGTATTGATCCCGATTCGGATCGTACTATATGC
TATATAATAAGATTGCAACATGTGCTACATTCGATCATGAGGAACATTAA
TTTCCACAGCGACGCCAAGGAGGATCTTATTTCGGTAGCGCACCTGAAAT
TGTGTATCCAGGCTTCCCAAGAATTATCATATTACTCGCTTCGATGCCAG
CTACATGAGGATTTCTACAAGTCGCCCATCTTTTGTGAGGCTCAGGGGAA
AATCAAAGCTAACTTTTCATTGATGCTTCTAAGCATTCAGTTCTTTATTA
ATCTACTGCATATTCGACAATACCACATAGCCAACTCGATGGAGCTGGTG
CAAAGGGATCTACTGGCGGCCATTGTGAGTCTACGTGTGCAGCAAGACTC
TCCACTGCTGGATAAGGCTATAGCCTACCTCTGGCAATATGAATCCAAAG
CAGATTTCTTTCGCAACATCTTGCTTTTTAAAGCTACGACTCTCTGCCCA
ACTCTGGCCCAATTATTGCACCGTCAACTCTTAGGAAAGCTTCACTTACC
CCAAGGATTTGCTAGTCTTGTTGAGGCCCTGCATCAAAATCCCAATGTGA
ATTCTTCCAGAAATGCGGAAATTGTGGCTAGTATTGTGGCCAGAAAAGGA
TTTTCTCAGTTAGCGCAAGAGAAGATGGTTCTCCAGGTGCTAGAATATTG
TAAGTTCTATCTGCAGAATGCGGACAAAATGTGCGCCGGTGTCCTATCGC
TCAGAAGACTTTACGATTTAAGTGATACAAATCAAAAGCTGATAAAAGAA
ATATTATTCAAACACTGGGAAACGCTTTGTAACCCAGAAGACATTATTAA
TGGCCTTATCTTAATGGATCACCAGGAACTGTGCAATCGCATTCTCTTAT
GGCAGCATCTCTTTTGTTCTTCAACCGTAGCTTGCTTACCCAGTAATCTA
CTCGTTCCCTACCTTCCTTTGCTGCTCCAACTCTACGATGGCCTTCCAAT
GGAATTACCGGCGTCATCGCAGATTTCTGCCATTATTTTGCGTTGTCTGG
ACAACAGAGAAATGAAAAACGAATTACCTGCGATACTCCAGAAGCTGTTT
AAATGGGAAATTGAGAAGGAACCTCCTTGGAAGTGTTTAAACCCACGCAT
TATAATCCTGCCTTCCATGAACACAACTCAAATTCAGGTTAAAGTAGCTC
ACAAAGATCATCTAGCAGATCACGATATGGGCAGAATATTGCCCGGTCTA
CTCACATCAAGCTCTCATCATTCCCTCACCTGCAAAGTTTTCCTCTCTCT
TCTGGGCTTCATAGCTAAACAGATAAATGATAAATCTTCAGCCAGCGTAG
ATTTTATTTCATCAGAAGCAGAGCTCAAAGACTTTCTGCACTCCAAATAT
CAACTGAAGCTAGATTTGCTCATTGCTTTAAACCAAATGGTAGCCCACCA
ACCATTAAGAGCTCAGCTATCACAACATACCAAGGAGCTTCTACATATAC
TAAAAGACTTGCTTGTCCACCGATCTAGAGAGCAAGATACCACGGATCAG
ATCCTACTTCTCGTTCTAAACCTCTTGCAGGAAATTCTTGAGGGCAGTGA
GAATATTCAACTTTCAGAGGCCTGTAAGGAACTGAAAGAACAATTGCACC
TGTTGGGTACTCGATCTTCCAACCCTCTTATCCAGCAATCTGTAAAATCA
TTGCTTACAATAATTCACGGCGCATGGCGACCAAGTGAGGCTGTTAAAAT
ACAACCTTTTCAAAGAGCTCGGTCCTTGATAGAGGAAAAACAATCCCACA
TGCAAGTGTATGGAATTCAGATGATGATTGATTTGCTGAAAAAAAGAGAT
CCTGCTACCTTAGCGCAGGGTCAACTTATCATAGCGTTAGCCCTGACCAC
TCTCAAGGATAAGGAATCCTACACCTTCTTAAATTGTGTTCGGCTCTTTG
TGTCGCTTGTTCATGTGATGGAGTCCGATGTGCTGGACAAATTGAGTGAT
GAGTACCTATCAGAGACGGCTCACTTAGACTACCGCCTCGTAGTGGGTGA
AGCTATTCTGAAAGTCGCTCAGGAGTTGGGTCCTCTTTGCTTTCGATACA
AGGCTGTTCTTCTCAACTGCTTCATGTACGGCTCCCGGTCTCCTGTTCAC
GAATTCCGGATGTCAGCCTTTGCCAATCTTGCCCAGCTTTGTCGCCTTTT
GGCCTTTCAAGTGCAGAACTTCTTCCACGAGTTACTCCAACTTGTTAATA
GCGAATTAACCACCGGAGGATATGTTCCCTCTAAGCGTGCAGCAGTCCTG
GTCTTAGCTGAACTATTAAACGGCATGGAGAACCTTCTGGATTACCAGGA
AATGTTACTCCCCATTTATCGCCTTTTAAAAGCGATTGAAGCGGATGAAT
CCTGTGATCCTCAAATGCGTCAGCATGCTGCAAACGGTCTGAAAATTTTA
AACAAAAAGTGCACAAAACTGATACAATCTGCCTTGGAGGAGAAATCATT
ACAGAAGCAGATTAAGGTGTTGGGCATTAAGGACGATGATTCACCTCAAA
GAAGAAACCGACATATACTGGAACTGAATTAAAAGCTTTCTAGACCAT
BS17676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango6-RA | 2766 | CG18398-PA | 1..2766 | 17..2782 | 13830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango6-RA | 2859 | CG18398-RA | 72..2846 | 17..2791 | 13845 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18969216..18971421 | 76..2281 | 11030 | 100 | Plus |
| 2L | 23513712 | 2L | 18971479..18971991 | 2279..2791 | 2535 | 99.6 | Plus |
| 2L | 23513712 | 2L | 18969099..18969159 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:57:12 has no hits.
BS17676.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:31 Download gff for
BS17676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 68..2831 | 17..2780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:05 Download gff for
BS17676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 72..2835 | 17..2780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:59 Download gff for
BS17676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 68..2831 | 17..2780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:32 Download gff for
BS17676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 72..2835 | 17..2780 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:32 Download gff for
BS17676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18969099..18969159 | 17..77 | 100 | -> | Plus |
| 2L | 18969218..18971419 | 78..2279 | 100 | -> | Plus |
| 2L | 18971480..18971980 | 2280..2780 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:05 Download gff for
BS17676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18969099..18969159 | 17..77 | 100 | -> | Plus |
| arm_2L | 18969218..18971419 | 78..2279 | 100 | -> | Plus |
| arm_2L | 18971480..18971980 | 2280..2780 | 100 | | Plus |
BS17676.3prime Sequence
818 bp (817 high quality bases) assembled on 2007-05-29
> BS17676.3prime
ATGGTCTAGAAAGCTTTTAATTCAGTTCCAGTATATGTCGGTTTCTTCTT
TGAGGTGAATCATCGTCCTTAATGCCCAACACCTTAATCTGCTTCTGTAA
TGATTTCTCCTCCAAGGCAGATTGTATCAGTTTTGTGCACTTTTTGTTTA
AAATTTTCAGACCGTTTGCAGCATGCTGACGCATTTGAGGATCACAGGAT
TCATCCGCTTCAATCGCTTTTAAAAGGCGATAAATGGGGAGTAACATTTC
CTGGTAATCCAGAAGGTTCTCCATGCCGTTTAATAGTTCAGCTAAGACCA
GGACTGCTGCACGCTTAGAGGGAACATATCCTCCGGTGGTTAATTCGCTA
TTAACAAGTTGGAGTAACTCGTGGAAGAAGTTCTGCACTTGAAAGGCCAA
AAGGCGACAAAGCTGGGCAAGATTGGCAAAGGCTGACATCCGGAATTCGT
GAACAGGAGACCGGGAGCCGTACATGAAGCAGTTGAGAAGAACAGCCTTG
TATCGAAAGCAAAGAGGACCCAACTCCTGAGCGACTTTCAGAATAGCTTC
ACCCACTACGAGGCGGTAGTCTAAGTGAGCCGTCTCTGATAGGTACTCAT
CACTCAATTTGTCCAGCACATCGGACTCCATCACATGAACAAGCGACACA
AAGAGCCGAACACAATTTAAGAAGGTGTAGGATTCCTTATCCTTGAGAGT
GGTCAGGGCTAACGCTATGATAAGTTGACCCTGCGCTAAGGTAGCAGGAT
CTCTTTTTTTCAGCAAATCAATCATCATCTGAATTCCATACACTTGCATG
TGGGATTGTTTTTCCTCT
BS17676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18398-PA | 2766 | CG18398-RA | 1965..2766 | 818..17 | 4010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango6-RA | 2859 | CG18398-RA | 2036..2846 | 818..8 | 4025 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18971479..18971991 | 520..8 | 2535 | 99.6 | Minus |
| 2L | 23513712 | 2L | 18971121..18971421 | 818..518 | 1505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:30:52 has no hits.
BS17676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:18:25 Download gff for
BS17676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18398-PA | 1965..2766 | 17..818 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:07:39 Download gff for
BS17676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 2036..2850 | 5..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:02 Download gff for
BS17676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 2036..2850 | 5..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:02 Download gff for
BS17676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18971121..18971419 | 520..818 | 100 | -> | Minus |
| 2L | 18971480..18971995 | 5..519 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:07:39 Download gff for
BS17676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18971121..18971419 | 520..818 | 100 | -> | Minus |
| arm_2L | 18971480..18971995 | 5..519 | 99 | | Minus |
BS17676.5prime Sequence
783 bp (782 high quality bases) assembled on 2007-05-29
> BS17676.5prime
GAAGTTATCAGTCGACATGATAAATACGGCCAAGTACTTTGCTCTTCTAG
AGAGTTTAAGGTTTAGTAAAGCTCTAGCAAATACGGCGAATAACTCAGGG
ACTGCCGAAGCCTTGGAAATCAACCTGCGAATTTTGGAAAAATATGCTAA
ACTCGAGATTGGTCAGCAATTGCATGAGCTGTGCCTGGAATATCAGTTAA
CAGACGATCACGAATCTAGTATTGATCCCGATTCGGATCGTACTATATGC
TATATAATAAGATTGCAACATGTGCTACATTCGATCATGAGGAACATTAA
TTTCCACAGCGACGCCAAGGAGGATCTTATTTCGGTAGCGCACCTGAAAT
TGTGTATCCAGGCTTCCCAAGAATTATCATATTACTCGCTTCGATGCCAG
CTACATGAGGATTTCTACAAGTCGCCCATCTTTTGTGAGGCTCAGGGGAA
AATCAAAGCTAACTTTTCATTGATGCTTCTAAGCATTCAGTTCTTTATTA
ATCTACTGCATATTCGACAATACCACATAGCCAACTCGATGGAGCTGGTG
CAAAGGGATCTACTGGCGGCCATTGTGAGTCTACGTGTGCAGCAAGACTC
TCCACTGCTGGATAAGGCTATAGCCTACCTCTGGCAATATGAATCCAAAG
CAGATTTCTTTCGCAACATCTTGCTTTTTAAAGCTACGACTCTCTGCCCA
ACTCTGGCCCAATTATTGCACCGTCAACTCTTAGGAAAGCTTCACTTACC
CCAAGGATTTGCTAGTCTTGTTGAGGCCCTGCA
BS17676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18398-PA | 2766 | CG18398-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 13:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango6-RA | 2859 | CG18398-RA | 72..838 | 17..783 | 3835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 13:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18969216..18969923 | 76..783 | 3540 | 100 | Plus |
| 2L | 23513712 | 2L | 18969099..18969159 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 13:50:23 has no hits.
BS17676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:18:31 Download gff for
BS17676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18398-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:41 Download gff for
BS17676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 72..837 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:15:10 Download gff for
BS17676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 72..837 | 17..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:15:10 Download gff for
BS17676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18969099..18969159 | 17..77 | 100 | -> | Plus |
| 2L | 18969218..18969922 | 78..782 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:41 Download gff for
BS17676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18969099..18969159 | 17..77 | 100 | -> | Plus |
| arm_2L | 18969218..18969922 | 78..782 | 100 | | Plus |
BS17676.pep Sequence
Translation from 16 to 2781
> BS17676.pep
MINTAKYFALLESLRFSKALANTANNSGTAEALEINLRILEKYAKLEIGQ
QLHELCLEYQLTDDHESSIDPDSDRTICYIIRLQHVLHSIMRNINFHSDA
KEDLISVAHLKLCIQASQELSYYSLRCQLHEDFYKSPIFCEAQGKIKANF
SLMLLSIQFFINLLHIRQYHIANSMELVQRDLLAAIVSLRVQQDSPLLDK
AIAYLWQYESKADFFRNILLFKATTLCPTLAQLLHRQLLGKLHLPQGFAS
LVEALHQNPNVNSSRNAEIVASIVARKGFSQLAQEKMVLQVLEYCKFYLQ
NADKMCAGVLSLRRLYDLSDTNQKLIKEILFKHWETLCNPEDIINGLILM
DHQELCNRILLWQHLFCSSTVACLPSNLLVPYLPLLLQLYDGLPMELPAS
SQISAIILRCLDNREMKNELPAILQKLFKWEIEKEPPWKCLNPRIIILPS
MNTTQIQVKVAHKDHLADHDMGRILPGLLTSSSHHSLTCKVFLSLLGFIA
KQINDKSSASVDFISSEAELKDFLHSKYQLKLDLLIALNQMVAHQPLRAQ
LSQHTKELLHILKDLLVHRSREQDTTDQILLLVLNLLQEILEGSENIQLS
EACKELKEQLHLLGTRSSNPLIQQSVKSLLTIIHGAWRPSEAVKIQPFQR
ARSLIEEKQSHMQVYGIQMMIDLLKKRDPATLAQGQLIIALALTTLKDKE
SYTFLNCVRLFVSLVHVMESDVLDKLSDEYLSETAHLDYRLVVGEAILKV
AQELGPLCFRYKAVLLNCFMYGSRSPVHEFRMSAFANLAQLCRLLAFQVQ
NFFHELLQLVNSELTTGGYVPSKRAAVLVLAELLNGMENLLDYQEMLLPI
YRLLKAIEADESCDPQMRQHAANGLKILNKKCTKLIQSALEEKSLQKQIK
VLGIKDDDSPQRRNRHILELN*
BS17676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango6-PA | 921 | CG18398-PA | 1..921 | 1..921 | 4678 | 100 | Plus |
