Clone Sequence Records
BS17682.complete Sequence
425 bp assembled on 2010-02-09
GenBank Submission: KX805156
> BS17682.complete
GAAGTTATCAGTCGACATGTTCAAGTTTGTCATGATCTGCGCAGTTTTGG
GCCTGGCGGTGGCCAACCCCCCGGTGCCCCATTCCCTAGGCCGTTCGGAG
GATGTCCACGCCGATGTCCTTTCCCAATCCGATGATGTTCGTGCCGATGG
ATTCGATTCCAGCCTGCACACCTCCAACGGAATCGAGCAGGCCGCCAGCG
GTGATGCCCATGGCAACATCCACGGCAACTTCGGCTGGATCTCACCCGAG
GGCGAGCACGTCGAGGTTAAGTACGTCGCCAATGAGAACGGATACCAGCC
CTCGGGAGCCTGGATCCCCACTCCTCCTCCAATCCCAGAGGCCATCGCCC
GCGCCGTCGCCTGGCTGGAGTCCCACCCACCAGCACCCGAGCACCCCCGT
CATCACTAGAAGCTTTCTAGACCAT
BS17682.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp1-RB | 393 | CG11650-PB | 1..393 | 17..409 | 1965 | 100 | Plus |
| Lcp1-RA | 393 | CG11650-PA | 1..393 | 17..409 | 1965 | 100 | Plus |
| Lcp2-RB | 381 | CG8697-PB | 63..381 | 91..409 | 1310 | 94 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp1-RB | 1065 | CG11650-RB | 43..437 | 17..411 | 1975 | 100 | Plus |
| Lcp1-RA | 543 | CG11650-RA | 43..437 | 17..411 | 1975 | 100 | Plus |
| Lcp2-RB | 927 | CG8697-RB | 315..633 | 91..409 | 1310 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8430743..8431125 | 411..29 | 1915 | 100 | Minus |
| 2R | 25286936 | 2R | 8434091..8434409 | 409..91 | 1310 | 94 | Minus |
| 2R | 25286936 | 2R | 8433018..8433250 | 336..108 | 270 | 76.4 | Minus |
| 3L | 28110227 | 3L | 10890418..10890523 | 241..346 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:38:16 has no hits.
BS17682.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:54 Download gff for
BS17682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:44 Download gff for
BS17682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 37..424 | 22..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:46 Download gff for
BS17682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 37..424 | 22..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:54 Download gff for
BS17682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 23..432 | 8..419 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:30 Download gff for
BS17682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 48..435 | 22..409 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:30 Download gff for
BS17682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8430745..8431128 | 22..409 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:46 Download gff for
BS17682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4318250..4318633 | 22..409 | 98 | | Minus |
BS17682.3prime Sequence
423 bp (423 high quality bases) assembled on 2007-05-29
> BS17682.3prime
ATGGTCTAGAAAGCTTCTAGTGATGACGGGGGTGCTCGGGTGCTGGTGGG
TGGGACTCCAGCCAGGCGACGGCGCGGGCGATGGCCTCTGGGATTGGAGG
AGGAGTGGGGATCCAGGCTCCCGAGGGCTGGTATCCGTTCTCATTGGCGA
CGTACTTAACCTCGACGTGCTCGCCCTCGGGTGAGATCCAGCCGAAGTTG
CCGTGGATGTTGCCATGGGCATCACCGCTGGCGGCCTGCTCGATTCCGTT
GGAGGTGTGCAGGCTGGAATCGAATCCATCGGCACGAACATCATCGGATT
GGGAAAGGACATCGGCGTGGACATCCTCCGAACGGCCTAGGGAATGGGGC
ACCGGGGGGTTGGCCACCGCCAGGCCCAAAACTGCGCAGATCATGACAAA
CTTGAACATGTCGACTGATAACT
BS17682.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11650-PA | 393 | Lcp1-RA | 1..393 | 409..17 | 1965 | 100 | Minus |
| CG8697-PA | 381 | Lcp2-RA | 73..381 | 325..17 | 1145 | 94.8 | Minus |
| CG2044-PA | 339 | Lcp4-RA | 265..294 | 109..80 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp1-RB | 1065 | CG11650-RB | 43..437 | 409..15 | 1975 | 100 | Minus |
| Lcp1-RA | 543 | CG11650-RA | 43..437 | 409..15 | 1975 | 100 | Minus |
| Lcp2-RB | 927 | CG8697-RB | 315..633 | 335..17 | 1310 | 94 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8430743..8431125 | 15..397 | 1915 | 100 | Plus |
| 2R | 25286936 | 2R | 8434091..8434409 | 17..335 | 1310 | 94 | Plus |
| 2R | 25286936 | 2R | 8433018..8433250 | 90..318 | 270 | 76.4 | Plus |
| 3L | 28110227 | 3L | 10890418..10890523 | 185..80 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:44:41 has no hits.
BS17682.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:04 Download gff for
BS17682.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11650-PA | 1..393 | 17..409 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:27 Download gff for
BS17682.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 23..432 | 7..418 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:03 Download gff for
BS17682.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 34..443 | 7..418 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:03 Download gff for
BS17682.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8430737..8431125 | 7..397 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:27 Download gff for
BS17682.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4318242..4318630 | 7..397 | 99 | <- | Plus |
BS17682.5prime Sequence
423 bp (423 high quality bases) assembled on 2007-05-29
> BS17682.5prime
GAAGTTATCAGTCGACATGTTCAAGTTTGTCATGATCTGCGCAGTTTTGG
GCCTGGCGGTGGCCAACCCCCCGGTGCCCCATTCCCTAGGCCGTTCGGAG
GATGTCCACGCCGATGTCCTTTCCCAATCCGATGATGTTCGTGCCGATGG
ATTCGATTCCAGCCTGCACACCTCCAACGGAATCGAGCAGGCCGCCAGCG
GTGATGCCCATGGCAACATCCACGGCAACTTCGGCTGGATCTCACCCGAG
GGCGAGCACGTCGAGGTTAAGTACGTCGCCAATGAGAACGGATACCAGCC
CTCGGGAGCCTGGATCCCCACTCCTCCTCCAATCCCAGAGGCCATCGCCC
GCGCCGTCGCCTGGCTGGAGTCCCACCCACCAGCACCCGAGCACCCCCGT
CATCACTAGAAGCTTTCTAGACC
BS17682.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11650-PA | 393 | Lcp1-RA | 1..393 | 17..409 | 1965 | 100 | Plus |
| CG8697-PA | 381 | Lcp2-RA | 73..381 | 101..409 | 1145 | 94.8 | Plus |
| CG2044-PA | 339 | Lcp4-RA | 265..294 | 317..346 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp1-RB | 1065 | CG11650-RB | 43..437 | 17..411 | 1975 | 100 | Plus |
| Lcp1-RA | 543 | CG11650-RA | 43..437 | 17..411 | 1975 | 100 | Plus |
| Lcp2-RB | 927 | CG8697-RB | 315..633 | 91..409 | 1310 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8430743..8431125 | 411..29 | 1915 | 100 | Minus |
| 2R | 25286936 | 2R | 8434091..8434409 | 409..91 | 1310 | 94 | Minus |
| 2R | 25286936 | 2R | 8433018..8433250 | 336..108 | 270 | 76.4 | Minus |
| 3L | 28110227 | 3L | 10890418..10890523 | 241..346 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:36:24 has no hits.
BS17682.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:08 Download gff for
BS17682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11650-PA | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:52:48 Download gff for
BS17682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 23..432 | 8..419 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:11:00 Download gff for
BS17682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 34..443 | 8..419 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:11:00 Download gff for
BS17682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8430737..8431125 | 29..419 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:52:48 Download gff for
BS17682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4318242..4318630 | 29..419 | 99 | <- | Minus |
BS17682.pep Sequence
Translation from 16 to 408
> BS17682.pep
MFKFVMICAVLGLAVANPPVPHSLGRSEDVHADVLSQSDDVRADGFDSSL
HTSNGIEQAASGDAHGNIHGNFGWISPEGEHVEVKYVANENGYQPSGAWI
PTPPPIPEAIARAVAWLESHPPAPEHPRHH*
BS17682.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp1-PB | 130 | CG11650-PB | 1..130 | 1..130 | 712 | 100 | Plus |
| Lcp1-PA | 130 | CG11650-PA | 1..130 | 1..130 | 712 | 100 | Plus |
| Lcp2-PB | 126 | CG8697-PB | 1..126 | 1..130 | 624 | 90 | Plus |
| Lcp2-PA | 126 | CG8697-PA | 1..126 | 1..130 | 624 | 90 | Plus |
| Lcp4-PB | 112 | CG2044-PB | 1..109 | 1..121 | 310 | 48.8 | Plus |
