Clone BS17685 Report

Search the DGRC for BS17685

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptAGO1-RA
Protein status:BS17685.pep: full length peptide match
Sequenced Size:2987

Clone Sequence Records

BS17685.complete Sequence

2987 bp assembled on 2009-12-08

GenBank Submission: KX806353

> BS17685.complete
GAAGTTATCAGTCGACATGTCCACGGAGCGTGAGCTGGCTCCCGGTGGGC
CAGCTCAGCTCCATCCGCACACGCTGCCGCTGACTTTTCCGGATCTCCAG
ATGACCTCCACCGTGGGCATCATTGGGAAAGTCTACGAGTCACAGTGGAC
CCCCTCGCCCACTCGGCCTCAGAGTCCCTCTCAGGCGCAGACTAGCTTCG
ACACGCTCACATCACCACCAGCGCCCGGCTCGTCGGTCAATCCCACCGCC
GTCACCAGCCCAAGTGCCCAGAATGTGGCCGCTGGTGGAGCAACTGTGGC
CGGTGCAGCAGCAACTGCCGCCCAGGTGGCCTCCGCCTTGGGTGCCACCA
CCGGCAGCGTGACGCCAGCAATTGCCACCGCAACGCCAGCCACGCAGCCG
GATATGCCCGTCTTTACGTGTCCACGACGCCCGAATCTCGGACGAGAGGG
TCGCCCGATTGTGCTGCGCGCCAATCACTTCCAGGTGACAATGCCGCGTG
GCTATGTGCATCACTATGACATCAATATACAGCCGGACAAGTGTCCGCGA
AAGGTGAACCGTGAGATTATCGAGACTATGGTGCATGCCTATAGCAAGAT
CTTCGGAGTGCTCAAGCCGGTGTTCGATGGTCGCAACAATCTGTATACCC
GCGATCCCCTGCCCATTGGCAACGAGCGTCTAGAGCTGGAGGTTACTCTA
CCCGGCGAGGGCAAAGATCGAATCTTTCGCGTGACGATCAAGTGGCAGGC
TCAGGTCTCGCTCTTCAATTTGGAGGAAGCTCTCGAAGGCCGCACGCGGC
AGATACCCTATGATGCCATTTTGGCGCTCGATGTGGTCATGCGCCATCTG
CCCAGCATGACGTACACGCCAGTGGGACGTAGCTTCTTCAGTTCCCCGGA
GGGTTACTACCATCCCCTGGGTGGTGGACGCGAGGTTTGGTTCGGTTTCC
ATCAGAGCGTAAGGCCCTCGCAGTGGAAGATGATGCTCAATATCGATGTC
TCGGCCACCGCTTTCTACAAGGCTCAACCAGTCATTGACTTCATGTGCGA
GGTGCTGGACATTCGCGACATCAACGAGCAGCGCAAACCGCTCACCGATT
CGCAGCGCGTCAAGTTCACGAAGGAGATCAAGGGTTTGAAGATCGAGATC
ACCCACTGCGGCCAGATGCGTCGCAAGTATCGTGTGTGCAACGTCACTCG
CCGCCCCGCTCAGATGCAATCATTCCCACTGCAGCTGGAGAACGGACAGA
CCGTAGAGTGCACCGTGGCCAAGTACTTCCTGGACAAGTACCGCATGAAA
TTGCGCTACCCGCACTTGCCCTGCCTGCAGGTTGGCCAAGAGCACAAGCA
CACTTACCTGCCTCTAGAGGTGTGCAACATTGTGGCCGGACAGCGGTGCA
TTAAAAAGCTGACCGATATGCAGACGTCGACCATGATCAAGGCCACAGCT
CGTTCAGCTCCGGATCGTGAGCGTGAGATTAACAACTTGGTAAAGCGCGC
CGACTTCAACAACGATTCGTATGTGCAAGAGTTTGGCCTGACCATCTCCA
ATTCGATGATGGAGGTACGAGGACGCGTCTTGCCTCCTCCCAAGCTTCAG
TATGGGGGACGTGTGTCTACCGGCCTCACCGGCCAGCAGCTGTTCCCGCC
ACAGAACAAGGTGAGCTTGGCCTCGCCCAACCAGGGTGTATGGGATATGC
GAGGCAAGCAGTTCTTCACTGGCGTCGAGATCCGCATCTGGGCCATCGCC
TGTTTTGCCCCACAGCGCACGGTGCGCGAGGATGCGCTGCGTAATTTCAC
CCAGCAGCTGCAGAAGATCTCAAACGATGCAGGCATGCCGATAATTGGAC
AGCCGTGCTTCTGTAAGTACGCCACCGGGCCGGATCAAGTGGAACCCATG
TTCCGTTACCTGAAGATCACCTTCCCCGGCCTGCAACTCGTCGTGGTTGT
GCTGCCCGGCAAGACTCCAGTATACGCCGAGGTGAAGCGTGTAGGTGACA
CCGTTCTGGGTATGGCCACCCAGTGTGTGCAGGCCAAGAACGTGAACAAG
ACATCGCCACAGACGCTCTCTAATCTGTGTCTGAAGATCAACGTCAAGTT
GGGCGGCATCAATTCAATTCTGGTCCCCTCCATTCGGCCAAAGGTCTTCA
ATGAGCCGGTCATCTTTTTGGGTGCCGATGTGACACACCCACCAGCTGGC
GACAACAAGAAACCATCGATTGCCGCCGTCGTGGGCTCCATGGATGCCCA
TCCATCGCGGTATGCCGCCACCGTTCGCGTACAGCAGCACCGACAGGAGA
TCATCCAGGAGCTGAGCAGCATGGTGCGCGAGCTGTTGATCATGTTCTAC
AAGTCGACGGGCGGCTACAAGCCCCACCGCATCATACTCTATCGTGACGG
AGTCTCCGAGGGACAATTCCCACATGTCCTGCAACACGAATTGACCGCCA
TTCGCGAGGCCTGCATTAAGCTAGAGCCAGAGTATCGGCCGGGCATCACA
TTCATTGTGGTGCAGAAGCGCCATCACACTCGACTCTTCTGCGCGGAGAA
GAAGGAGCAGAGCGGCAAATCGGGCAATATTCCCGCAGGCACCACCGTCG
ATGTGGGCATCACACATCCCACCGAATTTGATTTCTATCTATGCAGCCAT
CAGGGCATCCAGGGCACCAGTCGCCCCTCGCACTACCACGTTCTGTGGGA
CGACAATCACTTTGACTCGGACGAGCTGCAGTGCCTCACGTATCAGCTAT
GCCATACGTACGTGCGCTGCACCCGATCCGTCAGTATACCGGCGCCAGCC
TACTACGCCCATTTAGTGGCCTTCCGTGCCAGATATCATCTGGTGGAGAA
GGAGCACGATTCGGGCGAGGGTTCGCACCAGAGCGGCTGCTCAGAGGATC
GTACGCCAGGTGCCATGGCCAGGGCCATCACTGTGCACGCGGATACCAAG
AAGGTCATGTACTTTGCCTAAAAGCTTTCTAGACCAT

BS17685.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
AGO1-RD 2955 CG6671-PD 1..2955 17..2971 14775 100 Plus
AGO1-RA 2955 CG6671-PA 1..2955 17..2971 14775 100 Plus
AGO1-RC 2955 CG6671-PC 1..2955 17..2971 14775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
AGO1-RD 7888 CG6671-RD 349..3305 17..2973 14785 100 Plus
AGO1-RA 3481 CG6671-RA 92..3048 17..2973 14785 100 Plus
AGO1-RC 7528 CG6671-RC 349..3305 17..2973 14785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13948177..13949787 2832..1222 8055 100 Minus
2R 25286936 2R 13950132..13950917 998..213 3930 100 Minus
2R 25286936 2R 13949850..13950073 1221..998 1120 100 Minus
2R 25286936 2R 13947970..13948113 2973..2830 720 100 Minus
2R 25286936 2R 13954687..13954807 137..17 605 100 Minus
2R 25286936 2R 13951614..13951689 212..137 380 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:00:41 has no hits.

BS17685.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:22 Download gff for BS17685.complete
Subject Subject Range Query Range Percent Splice Strand
AGO1-RA 92..3044 17..2969 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:34 Download gff for BS17685.complete
Subject Subject Range Query Range Percent Splice Strand
AGO1-RC 349..3301 17..2969 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:22 Download gff for BS17685.complete
Subject Subject Range Query Range Percent Splice Strand
AGO1-RA 92..3044 17..2969 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:53 Download gff for BS17685.complete
Subject Subject Range Query Range Percent Splice Strand
AGO1-RC 349..3301 17..2969 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:53 Download gff for BS17685.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13949850..13950072 999..1221 100 <- Minus
2R 13950132..13950917 213..998 100 <- Minus
2R 13951614..13951688 138..212 100 <- Minus
2R 13947974..13948110 2833..2969 100 <- Minus
2R 13948177..13949787 1222..2832 100 <- Minus
2R 13954687..13954807 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:34 Download gff for BS17685.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9837355..9837577 999..1221 100 <- Minus
arm_2R 9835479..9835615 2833..2969 100 <- Minus
arm_2R 9835682..9837292 1222..2832 100 <- Minus
arm_2R 9837637..9838422 213..998 100 <- Minus
arm_2R 9839119..9839193 138..212 100 <- Minus
arm_2R 9842192..9842312 17..137 100   Minus

BS17685.3prime Sequence

817 bp (794 high quality bases) assembled on 2007-05-29

> BS17685.3prime
ATGGTCTAGAAAGCTTTTAGGCAAAGTACATGACCTTCTTGGTATCCGCG
TGCACAGTGATGGCCCTGGCCATGGCACCTGGCGTACGATCCTCTGAGCA
GCCGCTCTGGTGCGAACCCTCGCCCGAATCGTGCTCCTTCTCCACCAGAT
GATATCTGGCACGGAAGGCCACTAAATGGGCGTAGTAGGCTGGCGCCGGT
ATACTGACGGATCGGGTGCAGCGCACGTACGTATGGCATAGCTGATACGT
GAGGCACTGCAGCTCGTCCGAGTCAAAGTGATTGTCGTCCCACAGAACGT
GGTAGTGCGAGGGGCGACTGGTGCCCTGGATGCCCTGATGGCTGCATAGA
TAGAAATCAAATTCGGTGGGATGTGTGATGCCCACATCGACGGTGGTGCC
TGCGGGAATATTGCCCGATTTGCCGCTCTGCTCCTTCTTCTCCGCGCAGA
AGAGTCGAGTGTGATGGCGCTTCTGCACCACAATGAATGTGATGCCCGGC
CGATACTCTGGCTCTAGCTTAATGCAGGCCTCGCGAATGGCGGTCAATTC
GTGTTGCAGGACATGTGGGAATTGTCCCTCGGAGACTCCGTCACGATAGA
GTATGATGCGGTGGGGCTTGTAGCCGCCCGTCGACTTGTAGAACATGATC
AACAGCTCGCGCACCATGCTGCTCAGCTCCTGGATGATCTCCTGTCGGTG
CTGCTGTACGCGAACGGTGGCGGCATACCGCGATGGATGGGCATCCATGG
AGCCCACGACGGCGGCAATCGATGGTTTCTTGTTGTCGCCAGCTGGTGGG
TGTGTCACATCGGCACC

BS17685.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6671-PC 2955 AGO1-RC 2155..2955 817..17 4005 100 Minus
CG6671-PA 2955 AGO1-RA 2155..2955 817..17 4005 100 Minus
CG6671-PB 2853 AGO1-RB 2053..2853 817..17 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
AGO1-RD 7888 CG6671-RD 2503..3305 817..15 4015 100 Minus
AGO1-RA 3481 CG6671-RA 2246..3048 817..15 4015 100 Minus
AGO1-RB 5738 CG6671-RB 2375..3177 817..15 4015 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13948177..13948838 156..817 3310 100 Plus
2R 25286936 2R 13947970..13948113 15..158 720 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:47:29 has no hits.

BS17685.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:42 Download gff for BS17685.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6671-PB 2053..2853 17..817 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:01:30 Download gff for BS17685.3prime
Subject Subject Range Query Range Percent Splice Strand
AGO1-RB 2375..3183 9..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:03:53 Download gff for BS17685.3prime
Subject Subject Range Query Range Percent Splice Strand
AGO1-RB 2375..3183 9..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:03:53 Download gff for BS17685.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13947964..13948110 9..155 97 <- Plus
2R 13948177..13948838 156..817 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:01:30 Download gff for BS17685.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9835469..9835615 9..155 97 <- Plus
arm_2R 9835682..9836343 156..817 100   Plus

BS17685.5prime Sequence

865 bp (784 high quality bases) assembled on 2007-05-29

> BS17685.5prime
GAAGTTATCAGTCGACATGTCCACGGAGCGTGAGCTGGCTCCCGGTGGGC
CAGCTCAGCTCCATCCGCACACGCTGCCGCTGACTTTTCCGGATCTCCAG
ATGACCTCCACCGTGGGCATCATTGGGAAAGTCTACGAGTCACAGTGGAC
CCCCTCGCCCACTCGGCCTCAGAGTCCCTCTCAGGCGCAGACTAGCTTCG
ACACGCTCACATCACCACCAGCGCCCGGCTCGTCGGTCAATCCCACCGCC
GTCACCAGCCCAAGTGCCCAGAATGTGGCCGCTGGTGGAGCAACTGTGGC
CGGTGCAGCAGCAACTGCCGCCCAGGTGGCCTCCGCCTTGGGTGCCACCA
CCGGCAGCGTGACGCCAGCAATTGCCACCGCAACGCCAGCCACGCAGCCG
GATATGCCCGTCTTTACGTGTCCACGACGCCCGAATCTCGGACGAGAGGG
TCGCCCGATTGTGCTGCGCGCCAATCACTTCCAGGTGACAATGCCGCGTG
GCTATGTGCATCACTATGACATCAATATACAGCCGGACAAGTGTCCGCGA
AAGGTGAACCGTGAGATTATCGAGACTATGGTGCATGCCTATAGCAAGAT
CTTCGGAGTGCTCAAGCCGGTGTTCGATGGTCGCAACAATCTGTATACCC
GCGATCCCCTGCCCATTGGCAACGAGCGTCTAGAGCTGGAGGTTACTCTA
CCCGGCGAGGGCAAAGATCGAATCTTTCGCGTGACGATCAAGTGGCAGGC
TCAGGTCTCGCTCTTCAATTTGGAGGAAGCTCTCGAAGGCCGCACGCGGC
AGATACCCTATGATGCCATTTTTGGCGCTCGATGTGGTCATGCGCCATCT
GCCCAGCATGACGTA

BS17685.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6671-PC 2955 AGO1-RC 1..806 17..822 4030 100 Plus
CG6671-PA 2955 AGO1-RA 1..806 17..822 4030 100 Plus
CG6671-PB 2853 AGO1-RB 20..704 138..822 3425 100 Plus
CG6671-PC 2955 AGO1-RC 803..848 820..865 230 100 Plus
CG6671-PA 2955 AGO1-RA 803..848 820..865 230 100 Plus
CG6671-PB 2853 AGO1-RB 701..746 820..865 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
AGO1-RD 7888 CG6671-RD 349..1196 17..865 4220 99.9 Plus
AGO1-RA 3481 CG6671-RA 92..939 17..865 4220 99.9 Plus
AGO1-RC 7528 CG6671-RC 349..1196 17..865 4220 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13950266..13950917 865..213 3215 99.8 Minus
2R 25286936 2R 13954687..13954807 137..17 605 100 Minus
2R 25286936 2R 13951614..13951689 212..137 380 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:02:14 has no hits.

BS17685.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:46 Download gff for BS17685.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6671-PA 1..847 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:09:09 Download gff for BS17685.5prime
Subject Subject Range Query Range Percent Splice Strand
AGO1-RC 349..1195 17..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:36 Download gff for BS17685.5prime
Subject Subject Range Query Range Percent Splice Strand
AGO1-RC 349..1195 17..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:36 Download gff for BS17685.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13950267..13950917 213..864 99 <- Minus
2R 13951614..13951688 138..212 100 <- Minus
2R 13954687..13954807 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:09:09 Download gff for BS17685.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9837772..9838422 213..864 99 <- Minus
arm_2R 9839119..9839193 138..212 100 <- Minus
arm_2R 9842192..9842312 17..137 100   Minus

BS17685.pep Sequence

Translation from 16 to 2970

> BS17685.pep
MSTERELAPGGPAQLHPHTLPLTFPDLQMTSTVGIIGKVYESQWTPSPTR
PQSPSQAQTSFDTLTSPPAPGSSVNPTAVTSPSAQNVAAGGATVAGAAAT
AAQVASALGATTGSVTPAIATATPATQPDMPVFTCPRRPNLGREGRPIVL
RANHFQVTMPRGYVHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGVLK
PVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLF
NLEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPEGYYHP
LGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIR
DINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRVCNVTRRPAQM
QSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPL
EVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVKRADFNND
SYVQEFGLTISNSMMEVRGRVLPPPKLQYGGRVSTGLTGQQLFPPQNKVS
LASPNQGVWDMRGKQFFTGVEIRIWAIACFAPQRTVREDALRNFTQQLQK
ISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKITFPGLQLVVVVLPGKT
PVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINS
ILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYA
ATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQ
FPHVLQHELTAIREACIKLEPEYRPGITFIVVQKRHHTRLFCAEKKEQSG
KSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFD
SDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSG
EGSHQSGCSEDRTPGAMARAITVHADTKKVMYFA*

BS17685.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
AGO1-PD 984 CG6671-PD 1..984 1..984 5204 100 Plus
AGO1-PA 984 CG6671-PA 1..984 1..984 5204 100 Plus
AGO1-PC 984 CG6671-PC 1..984 1..984 5204 100 Plus
AGO1-PB 950 CG6671-PB 7..950 41..984 4990 99.9 Plus
AGO2-PE 787 CG7439-PE 6..756 165..942 890 32.7 Plus