Clone Sequence Records
BS17686.complete Sequence
893 bp assembled on 2010-02-09
GenBank Submission: KX805782
> BS17686.complete
GAAGTTATCAGTCGACATGTTTTGGTCCTCCCTACTAAGGGGCTTCAGCT
CACGTCAGAGCGGCTCCTCGAATAAACCCCCAAAACCTCCAAGTCCACCG
AAGCCACCATCGTCACCATCTCCACCAAAGTCTCCTTCTGCCAAACGAGA
ATGCAAGATCCGGACGCACTGCATTCCGGCCGCCTTCTGCGCCGAAGGGG
ATAAGTTCAAGTCGATGTGGGATCCGCCGAAGAACCTGCCTCCGCCGTAC
CCCTTCGTGGTCAGCCGATCAAATGACTTGTGCTGCGAACCCAACTGCAC
CAAACCACTGCCCTCATTCGACGAGCTGTATTACCGTCCCTCCTGCAAGA
ACGGTCCTTACCAGCGCCACTGGGTGGAGTGCCCCAAGTTCATGATCCGC
AAGAAGATAATCTGCGCCTACGACAAGCTGGAGGCTCTGAGCCCCGCCCG
TCGGGTGGCCGAGCGGCGCGAGCGGACAACGCTCAGTGCCACAGCCACAG
GACCATGTCCCCATTTCGCTCCGTTGGCACGATGCGTGCCAGGACGTCGT
CCGCCCAGATGCCACGCGGCCAAGACGCCCTCCTGCTGCCGCAGGTTGTG
TGCACCGATGCCCTGCTGGTCGGATTGTAAGCAGCCTAAGCTGGCCAAGC
GACCATATCGACCTCGCGAGTGCGAGTGCCGATTCCCCCTGAGCCTCTGC
GAAGCGGAGCGGGGTCGTCAGTGGGTCAAAATTCATGGTGAGAACCACGT
CTGTCCCAGTGCCATAAAAAAGGCCAAGAAGGCGAGAAAAGACATGCTCA
AGAAGATGAAAAAGGATAAGAAGGATAAGGGCACGGATAAGAAGAAAGAT
AAGAACAAGGATAAAAATAAAAAATAAAAGCTTTCTAGACCAT
BS17686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-RA | 861 | CG11635-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-RA | 935 | CG11635-RA | 70..930 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8358607..8359467 | 17..877 | 4305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:37:03 has no hits.
BS17686.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:14 Download gff for
BS17686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:30 Download gff for
BS17686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 489..1325 | 24..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:28 Download gff for
BS17686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 77..913 | 24..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:15 Download gff for
BS17686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 475..1342 | 8..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:01 Download gff for
BS17686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 77..913 | 24..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:01 Download gff for
BS17686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8358614..8359450 | 24..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:28 Download gff for
BS17686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4246119..4246955 | 24..860 | 100 | | Plus |
BS17686.3prime Sequence
755 bp (708 high quality bases) assembled on 2007-05-29
> BS17686.3prime
ATGGTCTAGAAAGCTTTTATTTTTTATTTTTATCCTTGTTCTTATCTTTC
TTCTTATCCGTGCCCTTATCCTTCTTATCCTTTTTCATCTTCTTGAGCAT
GTCTTTTCTCGCCTTCTTGGCCTTTTTTATGGCACTGGGACAGACGTGGT
TCTCACCATGAATTTTGACCCACTGACGACCCCGCTCCGCTTCGCAGAGG
CTCAGGGGGAATCGGCACTCGCACTCGCGAGGTCGATATGGTCGCTTGGC
CAGCTTAGGCTGCTTACAATCCGACCAGCAGGGCATCGGTGCACACAACC
TGCGGCAGCAGGAGGGCGTCTTGGCCGCGTGGCATCTGGGCGGACGACGT
CCTGGCACGCATCGTGCCAACGGAGCGAAATGGGGACATGGTCCTGTGGC
TGTGGCACTGAGCGTTGTCCGCTCGCGCCGCTCGGCCACCCGACGGGCGG
GGCTCAGAGCCTCCAGCTTGTCGTAGGCGCAGATTATCTTCTTGCGGATC
ATGAACTTGGGGCACTCCACCCAGTGGCGCTGGTAAGGACCGTTCTTGCA
GGAGGGACGGTAATACAGCTCGTCGAATGAGGGCAGTGGTTTGGTGCAGT
TGGGTTCGCAGCACAAGTCATTTGATCGGCTGACCACGAAGGGGTACGGC
GGAGGCAGGTTCTTCGGCGGATCCCACATCGACTTGAACTTATCCCCTTC
GGCGCAGAAGGCGGCCGGAATGCAGTGCGTCCGGATCTTGCATTCTCGTT
TGGCA
BS17686.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-PA | 861 | CG11635-RA | 123..861 | 755..17 | 3695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-RA | 935 | CG11635-RA | 192..930 | 755..17 | 3695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8358729..8359467 | 755..17 | 3695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:36:30 has no hits.
BS17686.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:50 Download gff for
BS17686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-PA | 124..861 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:52:50 Download gff for
BS17686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 193..935 | 10..754 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:11:11 Download gff for
BS17686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 193..935 | 10..754 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:11:11 Download gff for
BS17686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8358730..8359473 | 7..754 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:52:50 Download gff for
BS17686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4246235..4246978 | 7..754 | 99 | | Minus |
BS17686.5prime Sequence
621 bp (571 high quality bases) assembled on 2007-05-29
> BS17686.5prime
GAAGTTATCAGTCGACATGTTTTGGTCCTCCCTACTAAGGGGCTTCAGCT
CACGTCAGAGCGGCTCCTCGAATAAACCCCCAAAACCTCCAAGTCCACCG
AAGCCACCATCGTCACCATCTCCACCAAAGTCTCCTTCTGCCAAACGAGA
ATGCAAGATCCGGACGCACTGCATTCCGGCCGCCTTCTGCGCCGAAGGGG
ATAAGTTCAAGTCGATGTGGGATCCGCCGAAGAACCTGCCTCCGCCGTAC
CCCTTCGTGGTCAGCCGATCAAATGACTTGTGCTGCGAACCCAACTGCAC
CAAACCACTGCCCTCATTCGACGAGCTGTATTACCGTCCCTCCTGCAAGA
ACGGTCCTTACCAGCGCCACTGGGTGGAGTGCCCCAAGTTCATGATCCGC
AAGAAGATAATCTGCGCCTACGACAAGCTGGAGGCTCTGAGCCCCGCCCG
TCGGGTGGCCGAGCGGCGCGAGCGGACAACGCTCAGTGCCACAGCCACAG
GACCATGTCCCCATTTCGCTCCGTTGGCACGATGCGTGCCAGGACGTCGT
CCGCCCAGATGCCACGCGGCCAAGACGCCCTCCTGCTGCCGCAGGGTGTG
TGCACCGATGCCCTGCTGGTC
BS17686.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-PA | 861 | CG11635-RA | 1..605 | 17..621 | 3000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-RA | 935 | CG11635-RA | 70..674 | 17..621 | 3010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8358607..8359211 | 17..621 | 3010 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:47:35 has no hits.
BS17686.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:54 Download gff for
BS17686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-PA | 1..605 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:01:32 Download gff for
BS17686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 63..674 | 8..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:07 Download gff for
BS17686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 63..674 | 8..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:07 Download gff for
BS17686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8358600..8359211 | 8..621 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:01:32 Download gff for
BS17686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4246105..4246716 | 8..621 | 99 | | Plus |
BS17686.pep Sequence
Translation from 16 to 876
> BS17686.pep
MFWSSLLRGFSSRQSGSSNKPPKPPSPPKPPSSPSPPKSPSAKRECKIRT
HCIPAAFCAEGDKFKSMWDPPKNLPPPYPFVVSRSNDLCCEPNCTKPLPS
FDELYYRPSCKNGPYQRHWVECPKFMIRKKIICAYDKLEALSPARRVAER
RERTTLSATATGPCPHFAPLARCVPGRRPPRCHAAKTPSCCRRLCAPMPC
WSDCKQPKLAKRPYRPRECECRFPLSLCEAERGRQWVKIHGENHVCPSAI
KKAKKARKDMLKKMKKDKKDKGTDKKKDKNKDKNKK*
BS17686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-PA | 286 | CG11635-PA | 1..286 | 1..286 | 1619 | 100 | Plus |
| hubl-PB | 291 | CG30364-PB | 53..279 | 23..244 | 220 | 32.9 | Plus |
| hubl-PA | 291 | CG30364-PA | 53..279 | 23..244 | 220 | 32.9 | Plus |
| swif-PB | 284 | CG30366-PB | 88..279 | 41..235 | 219 | 33.6 | Plus |
| swif-PA | 284 | CG30366-PA | 88..279 | 41..235 | 219 | 33.6 | Plus |
