Clone Sequence Records
BS17687.complete Sequence
2138 bp assembled on 2009-12-07
GenBank Submission: KX803249
> BS17687.complete
GAAGTTATCAGTCGACATGAAGTCGTTCACGGTGATTGCGTTAGCTGCAG
TGGCATTGCTGGCTACTCTCGGCCAGGCCAAGCACCTGGACTCCAAGGTG
GCGGACAAGGACTTTCTGATGAAACAGAAGTTCATGTACCAGATCCTGCA
GCACATCTACCAGGACGATGTGTTCACCACGCCCTTCGGGGGCAGCTACG
TGGAGTACAAGCCGTGGGAGCACGTGGCCGACTATGTGCACCCGGAGATG
TTGGAGCACTTCTTCGAGCTGTGGCAACACCAACCCTTCACCGATGACAT
GGTGTGGTCGGTGATGTACGACAAGCACGAGGAGTATGTGGTGGGTCTGG
TGCGTCTCTTCTACTTCGCCAAGAACTGGGAGACCTTCCAGCACGTCGTC
TACTGGGCCCGCCAGCACGTAAACAAGCAGTTGTTCGTGTACGCCGTGAC
CATTGCCAGTTTGTTCCGTGATGATATGCAGGGAGTCGTCCTGCCGGCCC
ACTACGAGATCCACCCATGGAGCTACTTCGATAGCCAGGCACTGGAATGG
GCTGAGCACTACAAAATGCACGGCTTCCATCATGTCAAGCAGATGGACAA
CATCTACAACGTGGTGATCCGTACGAACTATTCGAACGTGCACGGTTCCC
TGAACTACGATCACGATTTGGCCTACTACCTGGAGGATGTTGGCTTCAAT
GCCTTCTACTACTACTTCAATCTGGACTATCCGTTCTGGACGAAGGGCGG
CGAGGAGCATGTCCTTAACAAGGATCGTCGCGGTGAGCTCTACCTGTATG
TCCACTGGCAATTGCTGGCCCGTTGGTACCTGGAGCGTCTGTCCCACGAT
CTCGGCGAGGTGCCCGCTTTCAACATGTATGTGCCAACCGAATCCGGCTA
TGCCAGTAACCTGCGCACCTACTACGGCGTACCCCAATGGCACCGGGAGA
ATCACCACAGCTTCTACCACGAGCACAACTACGAGCACATCGAGCATGTG
GAGATGTACACGCAGCGTGTCATGGACTGGATCCACAAGAACGAGAAGTT
CGATGTGGAGACCATCAATGTGCTGGGCAACATCATCCAGGGCAATGCGG
ACAGCGTGGACAAGAAGTTCTACGGCAGTCTTGACAAGCTGTACCGCTTC
ATTGTGAACGAGGGCCACCATTATGGCCATGGTGACGAGAGCTTCCCTGG
CCTTTTCATGCACTACGACACCTCTATGCGCGATCCGATCTTCTACGAGG
TATACAAGACCATTGTCAGCCACTACTGGCATCTGATGGAGACCTATCCG
GAGTACCACAAGAAGGATTACGCCTTCGAGGGTGTCCACATCGATGCCGT
CCACATGCCCGAAAGTCTGACCACCTACTTCGAGCACTTCGACTCGGACA
TCAGCAATGCCGTCAATGTGGAGCCCGCCGTTGAGGGATCCGCCGATCCG
TTGTACACCTTCGGCAGGAACTCCCACTACAAGGGATCCAGCTATGTGAT
CAAGGCCCGCCAGCAGCGTCTCAACCACAAGCCCTTCGAGTTCACCCTGG
ACGTGACCTCGGACAAGGCTCAGGATGCCGTTGTGAAGGTCTTCATTGGA
CCCAAGTACGATGAGCACGGACACGAGATCCCACTGGAGCACAACTACCA
GAACTTCTTCGAGCTGGAGCACTTCAAGGTGCATCTGGAGGCGGGCGTTA
ACCACATCAAGCGCGCCAGCGGTGACTTCTCCTTCTGGGTGAACGATCGC
ACCACCTACCTGGAGCTCTACCAGAAGCTGATGGACGCCACCAACAGTGA
CTACAAGTTCAAGCTGGATCAGTCGGAGGCCCATTGCGGCGTGCCCAACC
GAATGATGCTGCCGCGCGGCAAGAAGGGCGGCCAGGTGTTCCAGTTCTTC
TACATGGTCTACCCGTACCACCAGCCCGAGGTTGCCCAGTTCACTGGCTA
CGATCCGGTGGTCAGCTGCGGCGTGGGACACGGTTCCCGCTACGTGGACG
CCCTGCCCTTCGGTTTCCCCTTCAACAGGCCGGTGAAGCATGACTACTAC
TTCGATGTCCACAACTTCAAGTTCGTCGACGTGAAGATCTTCCATCGCGA
CGAGCACACCAATGTGGTCTAGAAGCTTTCTAGACCAT
BS17687.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsp2-RB | 2106 | CG6806-PB | 1..2106 | 17..2122 | 10530 | 100 | Plus |
| Lsp2-RA | 2106 | CG6806-PA | 1..2106 | 17..2122 | 10530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsp2-RB | 2477 | CG6806-RB | 18..2124 | 17..2123 | 10535 | 100 | Plus |
| Lsp2-RA | 2304 | CG6806-RA | 18..2124 | 17..2123 | 10535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12129410..12131516 | 17..2123 | 10535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:38:34 has no hits.
BS17687.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:35 Download gff for
BS17687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp2-RA | 1..2106 | 17..2122 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:06 Download gff for
BS17687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp2-RA | 18..2123 | 17..2122 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:32 Download gff for
BS17687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp2-RA | 18..2123 | 17..2122 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:51 Download gff for
BS17687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp2-RA | 18..2123 | 17..2122 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:28 Download gff for
BS17687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp2-RA | 18..2123 | 17..2122 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:28 Download gff for
BS17687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12129410..12131515 | 17..2122 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:32 Download gff for
BS17687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12122510..12124615 | 17..2122 | 100 | | Plus |
BS17687.3prime Sequence
862 bp (859 high quality bases) assembled on 2007-05-29
> BS17687.3prime
ATGGTCTAGAAAGCTTCTAGACCACATTGGTGTGCTCGTCGCGATGGAAG
ATCTTCACGTCGACGAACTTGAAGTTGTGGACATCGAAGTAGTAGTCATG
CTTCACCGGCCTGTTGAAGGGGAAACCGAAGGGCAGGGCGTCCACGTAGC
GGGAACCGTGTCCCACGCCGCAGCTGACCACCGGATCGTAGCCAGTGAAC
TGGGCAACCTCGGGCTGGTGGTACGGGTAGACCATGTAGAAGAACTGGAA
CACCTGGCCGCCCTTCTTGCCGCGCGGCAGCATCATTCGGTTGGGCACGC
CGCAATGGGCCTCCGACTGATCCAGCTTGAACTTGTAGTCACTGTTGGTG
GCGTCCATCAGCTTCTGGTAGAGCTCCAGGTAGGTGGTGCGATCGTTCAC
CCAGAAGGAGAAGTCACCGCTGGCGCGCTTGATGTGGTTAACGCCCGCCT
CCAGATGCACCTTGAAGTGCTCCAGCTCGAAGAAGTTCTGGTAGTTGTGC
TCCAGTGGGATCTCGTGTCCGTGCTCATCGTACTTGGGTCCAATGAAGAC
CTTCACAACGGCATCCTGAGCCTTGTCCGAGGTCACGTCCAGGGTGAACT
CGAAGGGCTTGTGGTTGAGACGCTGCTGGCGGGCCTTGATCACATAGCTG
GATCCCTTGTAGTGGGAGTTCCTGCCGAAGGTGTACAACGGATCGGCGGA
TCCCTCAACGGCGGGCTCCACATTGACGGCATTGCTGATGTCCGAGTCGA
AGTGCTCGAAGTAGGTGGTCAGACTTTCGGGCATGTGGACGGCATCGATG
TGGACACCCTCGAAGGCGTAATCCTTCTTGTGGTACTCCGGATAGGTCTC
CATCAGATGCCA
BS17687.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6806-PA | 2106 | Lsp2-RA | 1261..2106 | 862..17 | 4230 | 100 | Minus |
| CG11538-PA | 2055 | CG11538-RA | 1..819 | 44..862 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsp2-RB | 2477 | CG6806-RB | 1278..2124 | 862..16 | 4235 | 100 | Minus |
| Lsp2-RA | 2304 | CG6806-RA | 1278..2124 | 862..16 | 4235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12130670..12131516 | 862..16 | 4235 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 07:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 1434..1530 | 613..714 | 110 | 62.1 | Plus |
BS17687.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:19:59 Download gff for
BS17687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6806-PA | 1262..2106 | 17..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:06:44 Download gff for
BS17687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp2-RA | 1279..2128 | 12..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:38 Download gff for
BS17687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp2-RA | 1279..2128 | 12..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:38 Download gff for
BS17687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12130671..12131520 | 12..861 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:06:44 Download gff for
BS17687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12123771..12124620 | 12..861 | 99 | | Minus |
BS17687.5prime Sequence
904 bp (740 high quality bases) assembled on 2007-05-29
> BS17687.5prime
GAAGTTATCAGTCGACATGAAGTCGTTCACGGTGATTGCGTTAGCTGCAG
TGGCATTGCTGGCTACTCTCGGCCAGGCCAAGCACCTGGACTCCAAGGTG
GCGGACAAGGACTTTCTGATGAAACAGAAGTTCATGTACCAGATCCTGCA
GCACATCTACCAGGACGATGTGTTCACCACGCCCTTCGGGGGCAGCTACG
TGGAGTACAAGCCGTGGGAGCACGTGGCCGACTATGTGCACCCGGAGATG
TTGGAGCACTTCTTCGAGCTGTGGCAACACCAACCCTTCACCGATGACAT
GGTGTGGTCGGTGATGTACGACAAGCACGAGGAGTATGTGGTGGGTCTGG
TGCGTCTCTTCTACTTCGCCAAGAACTGGGAGACCTTCCAGCACGTCGTC
TACTGGGCCCGCCAGCACGTAAACAAGCAGTTGTTCGTGTACGCCGTGAC
CATTGCCAGTTTGTTCCGTGATGATATGCAGGGAGTCGTCCTGCCGGCCC
ACTACGAGATCCACCCATGGAGCTACTTCGATAGCCAGGCACTGGAATGG
GCTGAGCACTACAAAATGCACGGCTTCCATCATGTCAAGCAGATGGACAA
CATCTACAACGTGGTGATCCGTACGAACTATTCGAACGTGCACGGTTCCC
TGAACTACGATCACGATTTGGCCTACTACCTGGAGGATGTTGGCTTCAAT
GCCTTCTACTACTACTTCAATCTGGACTATCCGTTCTGGACGAAGGGCGG
CGAGGAGCATGTCCTTAACAAGGATCGTCGCGGTGAGCTCTACCTGTATG
TCCACTGGCAATTGCTGGCCCGTTGGTACCTGGAGCGTCTGTCCCACGAT
CTCGGCGAGGTGCCCGCTTTCACATGTATGTGCCAACCGAATCCGGCTAT
GCCA
BS17687.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6806-PA | 2106 | Lsp2-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
| CG11538-PA | 2055 | CG11538-RA | 1224..2055 | 872..41 | 4160 | 100 | Minus |
| CG6806-PA | 2106 | Lsp2-RA | 857..889 | 872..904 | 165 | 100 | Plus |
| CG11538-PA | 2055 | CG11538-RA | 1191..1223 | 904..872 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsp2-RB | 2477 | CG6806-RB | 18..906 | 17..904 | 4420 | 99.9 | Plus |
| Lsp2-RA | 2304 | CG6806-RA | 18..906 | 17..904 | 4420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:54:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12129410..12130298 | 17..904 | 4395 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:54:52 has no hits.
BS17687.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:03 Download gff for
BS17687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6806-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:42:36 Download gff for
BS17687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp2-RA | 13..905 | 10..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:23 Download gff for
BS17687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp2-RA | 13..905 | 10..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:23 Download gff for
BS17687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12129405..12130297 | 10..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:42:36 Download gff for
BS17687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12122505..12123397 | 10..903 | 99 | | Plus |
BS17687.pep Sequence
Translation from 16 to 2121
> BS17687.pep
MKSFTVIALAAVALLATLGQAKHLDSKVADKDFLMKQKFMYQILQHIYQD
DVFTTPFGGSYVEYKPWEHVADYVHPEMLEHFFELWQHQPFTDDMVWSVM
YDKHEEYVVGLVRLFYFAKNWETFQHVVYWARQHVNKQLFVYAVTIASLF
RDDMQGVVLPAHYEIHPWSYFDSQALEWAEHYKMHGFHHVKQMDNIYNVV
IRTNYSNVHGSLNYDHDLAYYLEDVGFNAFYYYFNLDYPFWTKGGEEHVL
NKDRRGELYLYVHWQLLARWYLERLSHDLGEVPAFNMYVPTESGYASNLR
TYYGVPQWHRENHHSFYHEHNYEHIEHVEMYTQRVMDWIHKNEKFDVETI
NVLGNIIQGNADSVDKKFYGSLDKLYRFIVNEGHHYGHGDESFPGLFMHY
DTSMRDPIFYEVYKTIVSHYWHLMETYPEYHKKDYAFEGVHIDAVHMPES
LTTYFEHFDSDISNAVNVEPAVEGSADPLYTFGRNSHYKGSSYVIKARQQ
RLNHKPFEFTLDVTSDKAQDAVVKVFIGPKYDEHGHEIPLEHNYQNFFEL
EHFKVHLEAGVNHIKRASGDFSFWVNDRTTYLELYQKLMDATNSDYKFKL
DQSEAHCGVPNRMMLPRGKKGGQVFQFFYMVYPYHQPEVAQFTGYDPVVS
CGVGHGSRYVDALPFGFPFNRPVKHDYYFDVHNFKFVDVKIFHRDEHTNV
V*
BS17687.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsp2-PB | 701 | CG6806-PB | 1..701 | 1..701 | 3895 | 100 | Plus |
| Lsp2-PA | 701 | CG6806-PA | 1..701 | 1..701 | 3895 | 100 | Plus |
| Lsp1gamma-PA | 772 | CG6821-PA | 4..750 | 5..695 | 963 | 31.5 | Plus |
| Lsp1beta-PB | 789 | CG4178-PB | 4..757 | 11..695 | 928 | 30.7 | Plus |
| Lsp1beta-PA | 789 | CG4178-PA | 4..757 | 11..695 | 928 | 30.7 | Plus |
