Clone Sequence Records
BS17689.complete Sequence
308 bp assembled on 2010-02-09
GenBank Submission: KX803144
> BS17689.complete
GAAGTTATCAGTCGACATGCGCAATTATCTCTGGTTAGCAGTGCTCCTGG
TGGTGGCCACCACCTGCATCAAGGCCAAGCCGCTGGTCTCCTTCGGTGTC
AGCTACCAGCAGCCTTACCTGGGCCCCCAGCCAGAATCCTACTACTACGG
AGGACGGTACCCGGCTGGTGGCTACTACAACAACTACCACAACAGCCCGG
GTCCGTACGGCTACCCCTATCCGTATGCCAATCGCTATGGTGCCCTCGAT
CTCGGAATCGGCGCCCTGTCGCTATCGTCGTTCCTGCTCTGAAAGCTTTC
TAGACCAT
BS17689.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-RB | 276 | CG13053-PB | 1..276 | 17..292 | 1380 | 100 | Plus |
CG13053-RA | 276 | CG13053-PA | 1..276 | 17..292 | 1380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-RB | 620 | CG13053-RB | 297..572 | 17..292 | 1380 | 100 | Plus |
CG13053-RA | 358 | CG13053-RA | 35..310 | 17..292 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16259085..16259343 | 292..34 | 1295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:08:14 has no hits.
BS17689.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:16 Download gff for
BS17689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 1..276 | 17..292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:32 Download gff for
BS17689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 35..309 | 17..291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:18 Download gff for
BS17689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 35..309 | 17..291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:16 Download gff for
BS17689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 29..310 | 9..292 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:40 Download gff for
BS17689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 35..309 | 17..291 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:40 Download gff for
BS17689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16259086..16259342 | 35..291 | 100 | <- | Minus |
3L | 16259409..16259426 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:18 Download gff for
BS17689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16252186..16252442 | 35..291 | 100 | <- | Minus |
arm_3L | 16252509..16252526 | 17..34 | 100 | | Minus |
BS17689.5prime Sequence
306 bp (306 high quality bases) assembled on 2007-05-29
> BS17689.5prime
GAAGTTATCAGTCGACATGCGCAATTATCTCTGGTTAGCAGTGCTCCTGG
TGGTGGCCACCACCTGCATCAAGGCCAAGCCGCTGGTCTCCTTCGGTGTC
AGCTACCAGCAGCCTTACCTGGGCCCCCAGCCAGAATCCTACTACTACGG
AGGACGGTACCCGGCTGGTGGCTACTACAACAACTACCACAACAGCCCGG
GTCCGTACGGCTACCCCTATCCGTATGCCAATCGCTATGGTGCCCTCGAT
CTCGGAATCGGCGCCCTGTCGCTATCGTCGTTCCTGCTCTGAAAGCTTTC
TAGACC
BS17689.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-PA | 276 | CG13053-RA | 1..276 | 17..292 | 1380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:13:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-RB | 620 | CG13053-RB | 297..572 | 17..292 | 1380 | 100 | Plus |
CG13053-RA | 358 | CG13053-RA | 35..310 | 17..292 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16259085..16259343 | 292..34 | 1295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:13:39 has no hits.
BS17689.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:21 Download gff for
BS17689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-PA | 1..276 | 17..292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:06:47 Download gff for
BS17689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 29..310 | 9..292 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:45 Download gff for
BS17689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 29..310 | 9..292 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:45 Download gff for
BS17689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16259085..16259342 | 35..292 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:06:47 Download gff for
BS17689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16252185..16252442 | 35..292 | 100 | <- | Minus |
BS17689.3prime Sequence
306 bp (306 high quality bases) assembled on 2007-05-29
> BS17689.3prime
ATGGTCTAGAAAGCTTTCAGAGCAGGAACGACGATAGCGACAGGGCGCCG
ATTCCGAGATCGAGGGCACCATAGCGATTGGCATACGGATAGGGGTAGCC
GTACGGACCCGGGCTGTTGTGGTAGTTGTTGTAGTAGCCACCAGCCGGGT
ACCGTCCTCCGTAGTAGTAGGATTCTGGCTGGGGGCCCAGGTAAGGCTGC
TGGTAGCTGACACCGAAGGAGACCAGCGGCTTGGCCTTGATGCAGGTGGT
GGCCACCACCAGGAGCACTGCTAACCAGAGATAATTGCGCATGTCGACTG
ATAACT
BS17689.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-PA | 276 | CG13053-RA | 1..276 | 292..17 | 1380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 13:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-RB | 620 | CG13053-RB | 297..572 | 292..17 | 1380 | 100 | Minus |
CG13053-RA | 358 | CG13053-RA | 35..310 | 292..17 | 1380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 13:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16259085..16259343 | 17..275 | 1295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 13:50:50 has no hits.
BS17689.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:17 Download gff for
BS17689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-PA | 1..276 | 17..292 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:45 Download gff for
BS17689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 29..310 | 17..300 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:15:13 Download gff for
BS17689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 29..310 | 17..300 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:15:13 Download gff for
BS17689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16259085..16259342 | 17..274 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:45 Download gff for
BS17689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16252185..16252442 | 17..274 | 100 | <- | Plus |
BS17689.pep Sequence
Translation from 16 to 291
> BS17689.pep
MRNYLWLAVLLVVATTCIKAKPLVSFGVSYQQPYLGPQPESYYYGGRYPA
GGYYNNYHNSPGPYGYPYPYANRYGALDLGIGALSLSSFLL*
BS17689.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-PB | 91 | CG13053-PB | 1..91 | 1..91 | 502 | 100 | Plus |
CG13053-PA | 91 | CG13053-PA | 1..91 | 1..91 | 502 | 100 | Plus |