Clone Sequence Records
BS17692.complete Sequence
989 bp assembled on 2010-02-09
GenBank Submission: KX801565
> BS17692.complete
GAAGTTATCAGTCGACATGAGCCTAAAATTGATGGCGTTTGTCTGTGCTC
TGCTGCTCCTGTGCACCTTGACCCATGTCCTGTCGGCCGCGACCACAGTG
CGTCCCTACAAGTTCGGCTTCACCATCGACGAGCAGCAGCATCGGGCAGA
GAAGAGAGATGAACGCGGCATTATCATGGGCGAGTTTGGGTTCATCACCG
CCGATGGTATCTATCACGTGACGGTCTATGCCACCGACGAGGAGGGCAAA
TTCCGGATAATCTCCATGAAGAGCTATCCTTACGCGGGTCCAGTTGGTTC
AAAAAGTGTTCCTGTGACAACGACTCCAAAGGTCCTGCTTCCTGCAGCTC
CGGTGGCTCTGCCCAAGTACAACTTCAACTCGGAGGCCTGTTCCGGTTGT
TTCCTAAAAAAGTCCCCTCCCAAGACGGAAATTCGCACACTTTCACAGCC
ATTGGCTCCAGTTCAACCAGGTAAGCCCGATGGCTCTTCAGACATCGGCC
TGAATGTGCAGTTACCCTTCCGGGAATCCATTGCACAGACTGTGGCAAGT
CGTCTTGGTTTGCTCCAAGATACACTGCAAACCTCCAACACAAACACGAA
CGCACCAAACACTAAAACAATCGAACTTGGTCTCAACATAGCAATGAGCA
CATACTACACAACAAAGAATGCTGTAACCGGACATGTGAGCACGCAGACC
TCCAATTCGCAAACTCCGAGTGCCAACACAAAGATCGACTACAATGTGGG
CGTGGTCGAGAAGGCTTCACCGCCGGTTTATCGGCCATTGAACATCCGGT
TGAACGAGGACGTTATGAGACAAGCTATTACATATGGAAACACAATACCT
GGCCATGTGCCCTTGCCCAATCAGCCACTTGTTGAAACCTCATTGCTTCC
AGCGAGTCAACACAACATCCGAATGCGGGCCTTAATGCAAAGGTTCCACT
TGCCAGTAACATTCAATCCGTAGAAGCTTTCTAGACCAT
BS17692.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)mbn-RB | 1962 | CG12755-PB | 1..958 | 17..973 | 4500 | 98.2 | Plus |
l(3)mbn-RD | 1209 | CG12755-PD | 1..456 | 17..472 | 2280 | 100 | Plus |
l(3)mbn-RE | 1791 | CG12755-PE | 1..454 | 17..470 | 2270 | 100 | Plus |
l(3)mbn-RB | 1962 | CG12755-PB | 959..1021 | 911..973 | 315 | 100 | Plus |
l(3)mbn-RB | 1962 | CG12755-PB | 1022..1084 | 911..973 | 315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)mbn-RB | 2321 | CG12755-RB | 247..1204 | 17..973 | 4500 | 98.2 | Plus |
l(3)mbn-RD | 1568 | CG12755-RD | 247..702 | 17..472 | 2280 | 100 | Plus |
l(3)mbn-RE | 2150 | CG12755-RE | 247..700 | 17..470 | 2270 | 100 | Plus |
l(3)mbn-RB | 2321 | CG12755-RB | 1205..1267 | 911..973 | 315 | 100 | Plus |
l(3)mbn-RB | 2321 | CG12755-RB | 1268..1330 | 911..973 | 315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6125322..6125993 | 973..303 | 3070 | 97.5 | Minus |
3L | 28110227 | 3L | 6126354..6126499 | 302..157 | 730 | 100 | Minus |
3L | 28110227 | 3L | 6128357..6128469 | 162..50 | 550 | 99.1 | Minus |
3L | 28110227 | 3L | 6125196..6125258 | 973..911 | 315 | 100 | Minus |
3L | 28110227 | 3L | 6125259..6125321 | 973..911 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:08:18 has no hits.
BS17692.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:17 Download gff for
BS17692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RC | 1..957 | 17..973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:33 Download gff for
BS17692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RC | 59..1015 | 17..973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:20 Download gff for
BS17692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RB | 247..1140 | 17..910 | 100 | -> | Plus |
l(3)mbn-RB | 1205..1267 | 911..973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:17 Download gff for
BS17692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RC | 59..1015 | 17..973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:42 Download gff for
BS17692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RB | 247..1140 | 17..910 | 100 | -> | Plus |
l(3)mbn-RB | 1205..1267 | 911..973 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:42 Download gff for
BS17692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6125259..6125321 | 911..973 | 100 | <- | Minus |
3L | 6125386..6125993 | 303..910 | 100 | <- | Minus |
3L | 6126354..6126497 | 159..302 | 100 | <- | Minus |
3L | 6128361..6128469 | 50..158 | 100 | <- | Minus |
3L | 6128529..6128561 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:20 Download gff for
BS17692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6118359..6118421 | 911..973 | 100 | <- | Minus |
arm_3L | 6118486..6119093 | 303..910 | 100 | <- | Minus |
arm_3L | 6119454..6119597 | 159..302 | 100 | <- | Minus |
arm_3L | 6121461..6121569 | 50..158 | 100 | <- | Minus |
arm_3L | 6121629..6121661 | 17..49 | 100 | | Minus |
BS17692.3prime Sequence
857 bp (735 high quality bases) assembled on 2007-05-29
> BS17692.3prime
ATGGTCTAGAAAGCTTCTACGGATTGAATGTTACTGGCAAGTGGAACCTT
TGCATTAAGGCCCGCATTCGGATGTTGTGTTGACTCGCTGGAAGCAATGA
GGTTTCAACAAGTGGCTGATTGGGCAAGGGCACATGGCCAGGTATTGTGT
TTCCATATGTAATAGCTTGTCTCATAACGTCCTCGTTCAACCGGATGTTC
AATGGCCGATAAACCGGCGGTGAAGCCTTCTCGACCACGCCCACATTGTA
GTCGATCTTTGTGTTGGCACTCGGAGTTTGCGAATTGGAGGTCTGCGTGC
TCACATGTCCGGTTACAGCATTCTTTGTTGTGTAGTATGTGCTCATTGCT
ATGTTGAGACCAAGTTCGATTGTTTTAGTGTTTGGTGCGTTCGTGTTTGT
GTTGGAGGTTTGCAGTGTATCTTGGAGCAAACCAAGACGACTTGCCACAG
TCTGTGCAATGGATTCCCGGAAGGGTAACTGCACATTCAGGCCGATGTCT
GAAGAGCCATCGGGCTTACCTGGTTGAACTGGAGCCAATGGCTGTGAAAG
TGTGCGAATTTCCGTCTTGGGAGGGGACTTTTTTAGGAAACAACCGGAAC
AGGCCTCCGAGTTGAAGTTGTACTTGGGCAGAGCCACCGGAGCTGCAGGA
AGCAGGACCTTTGGAGTCGTTGTCACAGGAACACTTTTTGAACCAACTGG
ACCCGCGTAAGGATAGCTCTTCATGGAGATTATCCGGAATTTGCCCTCCT
CGTCGGTGGCATAGACCGTCACGTGATAGATACCATCGGCGGTGATGAAC
CCAAACTCGCCCATGATAATGCCGCGTTCATCTCTCCTCTCTGCCCGATG
CTGCTGC
BS17692.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12755-PC | 957 | l(3)mbn-RC | 117..957 | 857..17 | 4180 | 99.8 | Minus |
CG12755-PB | 1962 | l(3)mbn-RB | 117..894 | 857..80 | 3865 | 99.8 | Minus |
CG12755-PB | 1962 | l(3)mbn-RB | 959..1021 | 79..17 | 315 | 100 | Minus |
CG12755-PB | 1962 | l(3)mbn-RB | 1022..1084 | 79..17 | 315 | 100 | Minus |
CG12755-PB | 1962 | l(3)mbn-RB | 919..958 | 56..17 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)mbn-RB | 2321 | CG12755-RB | 363..1204 | 857..17 | 3940 | 98 | Minus |
l(3)mbn-RD | 1568 | CG12755-RD | 363..702 | 857..518 | 1685 | 99.7 | Minus |
l(3)mbn-RE | 2150 | CG12755-RE | 363..700 | 857..520 | 1675 | 99.7 | Minus |
l(3)mbn-RB | 2321 | CG12755-RB | 1205..1267 | 79..17 | 315 | 100 | Minus |
l(3)mbn-RB | 2321 | CG12755-RB | 1268..1330 | 79..17 | 315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:13:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6125322..6125993 | 17..687 | 3070 | 97.5 | Plus |
3L | 28110227 | 3L | 6126354..6126499 | 688..833 | 730 | 100 | Plus |
3L | 28110227 | 3L | 6125196..6125258 | 17..79 | 315 | 100 | Plus |
3L | 28110227 | 3L | 6125259..6125321 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:13:43 has no hits.
BS17692.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:46 Download gff for
BS17692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12755-PC | 117..957 | 17..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:06:49 Download gff for
BS17692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RB | 363..1140 | 80..857 | 99 | -> | Minus |
l(3)mbn-RB | 1205..1267 | 17..79 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:57 Download gff for
BS17692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RB | 363..1140 | 80..857 | 99 | -> | Minus |
l(3)mbn-RB | 1205..1267 | 17..79 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:57 Download gff for
BS17692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6126354..6126497 | 688..831 | 100 | <- | Plus |
3L | 6128361..6128386 | 832..857 | 96 | | Plus |
3L | 6125259..6125321 | 17..79 | 100 | <- | Plus |
3L | 6125386..6125993 | 80..687 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:06:49 Download gff for
BS17692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6118359..6118421 | 17..79 | 100 | <- | Plus |
arm_3L | 6118486..6119093 | 80..687 | 100 | <- | Plus |
arm_3L | 6119454..6119597 | 688..831 | 100 | <- | Plus |
arm_3L | 6121461..6121486 | 832..857 | 96 | | Plus |
BS17692.5prime Sequence
871 bp (745 high quality bases) assembled on 2007-05-29
> BS17692.5prime
GAAGTTATCAGTCGACATGAGCCTAAAATTGATGGCGTTTGTCTGTGCTC
TGCTGCTCCTGTGCACCTTGACCCATGTCCTGTCGGCCGCGACCACAGTG
CGTCCCTACAAGTTCGGCTTCACCATCGACGAGCAGCAGCATCGGGCAGA
GAAGAGAGATGAACGCGGCATTATCATGGGCGAGTTTGGGTTCATCACCG
CCGATGGTATCTATCACGTGACGGTCTATGCCACCGACGAGGAGGGCAAA
TTCCGGATAATCTCCATGAAGAGCTATCCTTACGCGGGTCCAGTTGGTTC
AAAAAGTGTTCCTGTGACAACGACTCCAAAGGTCCTGCTTCCTGCAGCTC
CGGTGGCTCTGCCCAAGTACAACTTCAACTCGGAGGCCTGTTCCGGTTGT
TTCCTAAAAAAGTCCCCTCCCAAGACGGAAATTCGCACACTTTCACAGCC
ATTGGCTCCAGTTCAACCAGGTAAGCCCGATGGCTCTTCAGACATCGGCC
TGAATGTGCAGTTACCCTTCCGGGAATCCATTGCACAGACTGTGGCAAGT
CGTCTTGGTTTGCTCCAAGATACACTGCAAACCTCCAACACAAACACGAA
CGCACCAAACACTAAAACAATCGAACTTGGTCTCAACATAGCAATGAGCA
CATACTACACAACAAAGAATGCTGTAACCGGACATGTGAGCACGCAGACC
TCCAATTCGCAAACTCCGAGTGCCAACACAAAGATCGACTACAATGTGGG
CGTGGTCGAGAAGGCTTCACCGCCGGTTTTATCGCCATTGAACATCCGGT
TGAACGAGGACGTTATGAGACAAGCTATTACATATGGAAACACAATACCT
GGCCATGTGCCCTTGCCCAAT
BS17692.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12755-PB | 1962 | l(3)mbn-RB | 1..763 | 17..779 | 3815 | 100 | Plus |
CG12755-PC | 957 | l(3)mbn-RC | 1..763 | 17..779 | 3815 | 100 | Plus |
CG12755-PB | 1962 | l(3)mbn-RB | 768..855 | 784..871 | 440 | 100 | Plus |
CG12755-PC | 957 | l(3)mbn-RC | 768..855 | 784..871 | 440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)mbn-RB | 2321 | CG12755-RB | 247..1101 | 17..871 | 4230 | 99.8 | Plus |
l(3)mbn-RD | 1568 | CG12755-RD | 247..702 | 17..472 | 2280 | 100 | Plus |
l(3)mbn-RE | 2150 | CG12755-RE | 247..700 | 17..470 | 2270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6125425..6125993 | 871..303 | 2785 | 99.3 | Minus |
3L | 28110227 | 3L | 6126354..6126499 | 302..157 | 730 | 100 | Minus |
3L | 28110227 | 3L | 6128357..6128469 | 162..50 | 550 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:55:18 has no hits.
BS17692.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:50 Download gff for
BS17692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12755-PC | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:42:41 Download gff for
BS17692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RB | 247..1101 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:15 Download gff for
BS17692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RB | 247..1101 | 17..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:15 Download gff for
BS17692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6128361..6128469 | 50..158 | 100 | <- | Minus |
3L | 6128529..6128561 | 17..49 | 100 | | Minus |
3L | 6125425..6125993 | 303..871 | 99 | <- | Minus |
3L | 6126354..6126497 | 159..302 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:42:41 Download gff for
BS17692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6118525..6119093 | 303..871 | 99 | <- | Minus |
arm_3L | 6119454..6119597 | 159..302 | 100 | <- | Minus |
arm_3L | 6121461..6121569 | 50..158 | 100 | <- | Minus |
arm_3L | 6121629..6121661 | 17..49 | 100 | | Minus |
BS17692.pep Sequence
Translation from 16 to 972
> BS17692.pep
MSLKLMAFVCALLLLCTLTHVLSAATTVRPYKFGFTIDEQQHRAEKRDER
GIIMGEFGFITADGIYHVTVYATDEEGKFRIISMKSYPYAGPVGSKSVPV
TTTPKVLLPAAPVALPKYNFNSEACSGCFLKKSPPKTEIRTLSQPLAPVQ
PGKPDGSSDIGLNVQLPFRESIAQTVASRLGLLQDTLQTSNTNTNAPNTK
TIELGLNIAMSTYYTTKNAVTGHVSTQTSNSQTPSANTKIDYNVGVVEKA
SPPVYRPLNIRLNEDVMRQAITYGNTIPGHVPLPNQPLVETSLLPASQHN
IRMRALMQRFHLPVTFNP*
BS17692.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)mbn-PB | 653 | CG12755-PB | 1..315 | 1..317 | 1537 | 95.3 | Plus |
l(3)mbn-PE | 596 | CG12755-PE | 1..258 | 1..317 | 1068 | 71.3 | Plus |
l(3)mbn-PD | 402 | CG12755-PD | 1..167 | 1..167 | 796 | 92.2 | Plus |