Clone BS17692 Report

Search the DGRC for BS17692

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:92
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)mbn-RC
Protein status:BS17692.pep: full length peptide match
Sequenced Size:989

Clone Sequence Records

BS17692.complete Sequence

989 bp assembled on 2010-02-09

GenBank Submission: KX801565

> BS17692.complete
GAAGTTATCAGTCGACATGAGCCTAAAATTGATGGCGTTTGTCTGTGCTC
TGCTGCTCCTGTGCACCTTGACCCATGTCCTGTCGGCCGCGACCACAGTG
CGTCCCTACAAGTTCGGCTTCACCATCGACGAGCAGCAGCATCGGGCAGA
GAAGAGAGATGAACGCGGCATTATCATGGGCGAGTTTGGGTTCATCACCG
CCGATGGTATCTATCACGTGACGGTCTATGCCACCGACGAGGAGGGCAAA
TTCCGGATAATCTCCATGAAGAGCTATCCTTACGCGGGTCCAGTTGGTTC
AAAAAGTGTTCCTGTGACAACGACTCCAAAGGTCCTGCTTCCTGCAGCTC
CGGTGGCTCTGCCCAAGTACAACTTCAACTCGGAGGCCTGTTCCGGTTGT
TTCCTAAAAAAGTCCCCTCCCAAGACGGAAATTCGCACACTTTCACAGCC
ATTGGCTCCAGTTCAACCAGGTAAGCCCGATGGCTCTTCAGACATCGGCC
TGAATGTGCAGTTACCCTTCCGGGAATCCATTGCACAGACTGTGGCAAGT
CGTCTTGGTTTGCTCCAAGATACACTGCAAACCTCCAACACAAACACGAA
CGCACCAAACACTAAAACAATCGAACTTGGTCTCAACATAGCAATGAGCA
CATACTACACAACAAAGAATGCTGTAACCGGACATGTGAGCACGCAGACC
TCCAATTCGCAAACTCCGAGTGCCAACACAAAGATCGACTACAATGTGGG
CGTGGTCGAGAAGGCTTCACCGCCGGTTTATCGGCCATTGAACATCCGGT
TGAACGAGGACGTTATGAGACAAGCTATTACATATGGAAACACAATACCT
GGCCATGTGCCCTTGCCCAATCAGCCACTTGTTGAAACCTCATTGCTTCC
AGCGAGTCAACACAACATCCGAATGCGGGCCTTAATGCAAAGGTTCCACT
TGCCAGTAACATTCAATCCGTAGAAGCTTTCTAGACCAT

BS17692.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-RB 1962 CG12755-PB 1..958 17..973 4500 98.2 Plus
l(3)mbn-RD 1209 CG12755-PD 1..456 17..472 2280 100 Plus
l(3)mbn-RE 1791 CG12755-PE 1..454 17..470 2270 100 Plus
l(3)mbn-RB 1962 CG12755-PB 959..1021 911..973 315 100 Plus
l(3)mbn-RB 1962 CG12755-PB 1022..1084 911..973 315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-RB 2321 CG12755-RB 247..1204 17..973 4500 98.2 Plus
l(3)mbn-RD 1568 CG12755-RD 247..702 17..472 2280 100 Plus
l(3)mbn-RE 2150 CG12755-RE 247..700 17..470 2270 100 Plus
l(3)mbn-RB 2321 CG12755-RB 1205..1267 911..973 315 100 Plus
l(3)mbn-RB 2321 CG12755-RB 1268..1330 911..973 315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6125322..6125993 973..303 3070 97.5 Minus
3L 28110227 3L 6126354..6126499 302..157 730 100 Minus
3L 28110227 3L 6128357..6128469 162..50 550 99.1 Minus
3L 28110227 3L 6125196..6125258 973..911 315 100 Minus
3L 28110227 3L 6125259..6125321 973..911 315 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:08:18 has no hits.

BS17692.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:17 Download gff for BS17692.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RC 1..957 17..973 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:33 Download gff for BS17692.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RC 59..1015 17..973 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:20 Download gff for BS17692.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 247..1140 17..910 100 -> Plus
l(3)mbn-RB 1205..1267 911..973 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:17 Download gff for BS17692.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RC 59..1015 17..973 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:42 Download gff for BS17692.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 247..1140 17..910 100 -> Plus
l(3)mbn-RB 1205..1267 911..973 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:42 Download gff for BS17692.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6125259..6125321 911..973 100 <- Minus
3L 6125386..6125993 303..910 100 <- Minus
3L 6126354..6126497 159..302 100 <- Minus
3L 6128361..6128469 50..158 100 <- Minus
3L 6128529..6128561 17..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:20 Download gff for BS17692.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6118359..6118421 911..973 100 <- Minus
arm_3L 6118486..6119093 303..910 100 <- Minus
arm_3L 6119454..6119597 159..302 100 <- Minus
arm_3L 6121461..6121569 50..158 100 <- Minus
arm_3L 6121629..6121661 17..49 100   Minus

BS17692.3prime Sequence

857 bp (735 high quality bases) assembled on 2007-05-29

> BS17692.3prime
ATGGTCTAGAAAGCTTCTACGGATTGAATGTTACTGGCAAGTGGAACCTT
TGCATTAAGGCCCGCATTCGGATGTTGTGTTGACTCGCTGGAAGCAATGA
GGTTTCAACAAGTGGCTGATTGGGCAAGGGCACATGGCCAGGTATTGTGT
TTCCATATGTAATAGCTTGTCTCATAACGTCCTCGTTCAACCGGATGTTC
AATGGCCGATAAACCGGCGGTGAAGCCTTCTCGACCACGCCCACATTGTA
GTCGATCTTTGTGTTGGCACTCGGAGTTTGCGAATTGGAGGTCTGCGTGC
TCACATGTCCGGTTACAGCATTCTTTGTTGTGTAGTATGTGCTCATTGCT
ATGTTGAGACCAAGTTCGATTGTTTTAGTGTTTGGTGCGTTCGTGTTTGT
GTTGGAGGTTTGCAGTGTATCTTGGAGCAAACCAAGACGACTTGCCACAG
TCTGTGCAATGGATTCCCGGAAGGGTAACTGCACATTCAGGCCGATGTCT
GAAGAGCCATCGGGCTTACCTGGTTGAACTGGAGCCAATGGCTGTGAAAG
TGTGCGAATTTCCGTCTTGGGAGGGGACTTTTTTAGGAAACAACCGGAAC
AGGCCTCCGAGTTGAAGTTGTACTTGGGCAGAGCCACCGGAGCTGCAGGA
AGCAGGACCTTTGGAGTCGTTGTCACAGGAACACTTTTTGAACCAACTGG
ACCCGCGTAAGGATAGCTCTTCATGGAGATTATCCGGAATTTGCCCTCCT
CGTCGGTGGCATAGACCGTCACGTGATAGATACCATCGGCGGTGATGAAC
CCAAACTCGCCCATGATAATGCCGCGTTCATCTCTCCTCTCTGCCCGATG
CTGCTGC

BS17692.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12755-PC 957 l(3)mbn-RC 117..957 857..17 4180 99.8 Minus
CG12755-PB 1962 l(3)mbn-RB 117..894 857..80 3865 99.8 Minus
CG12755-PB 1962 l(3)mbn-RB 959..1021 79..17 315 100 Minus
CG12755-PB 1962 l(3)mbn-RB 1022..1084 79..17 315 100 Minus
CG12755-PB 1962 l(3)mbn-RB 919..958 56..17 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-RB 2321 CG12755-RB 363..1204 857..17 3940 98 Minus
l(3)mbn-RD 1568 CG12755-RD 363..702 857..518 1685 99.7 Minus
l(3)mbn-RE 2150 CG12755-RE 363..700 857..520 1675 99.7 Minus
l(3)mbn-RB 2321 CG12755-RB 1205..1267 79..17 315 100 Minus
l(3)mbn-RB 2321 CG12755-RB 1268..1330 79..17 315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6125322..6125993 17..687 3070 97.5 Plus
3L 28110227 3L 6126354..6126499 688..833 730 100 Plus
3L 28110227 3L 6125196..6125258 17..79 315 100 Plus
3L 28110227 3L 6125259..6125321 17..79 315 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:13:43 has no hits.

BS17692.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:46 Download gff for BS17692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12755-PC 117..957 17..857 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:06:49 Download gff for BS17692.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 363..1140 80..857 99 -> Minus
l(3)mbn-RB 1205..1267 17..79 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:57 Download gff for BS17692.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 363..1140 80..857 99 -> Minus
l(3)mbn-RB 1205..1267 17..79 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:57 Download gff for BS17692.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6126354..6126497 688..831 100 <- Plus
3L 6128361..6128386 832..857 96   Plus
3L 6125259..6125321 17..79 100 <- Plus
3L 6125386..6125993 80..687 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:06:49 Download gff for BS17692.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6118359..6118421 17..79 100 <- Plus
arm_3L 6118486..6119093 80..687 100 <- Plus
arm_3L 6119454..6119597 688..831 100 <- Plus
arm_3L 6121461..6121486 832..857 96   Plus

BS17692.5prime Sequence

871 bp (745 high quality bases) assembled on 2007-05-29

> BS17692.5prime
GAAGTTATCAGTCGACATGAGCCTAAAATTGATGGCGTTTGTCTGTGCTC
TGCTGCTCCTGTGCACCTTGACCCATGTCCTGTCGGCCGCGACCACAGTG
CGTCCCTACAAGTTCGGCTTCACCATCGACGAGCAGCAGCATCGGGCAGA
GAAGAGAGATGAACGCGGCATTATCATGGGCGAGTTTGGGTTCATCACCG
CCGATGGTATCTATCACGTGACGGTCTATGCCACCGACGAGGAGGGCAAA
TTCCGGATAATCTCCATGAAGAGCTATCCTTACGCGGGTCCAGTTGGTTC
AAAAAGTGTTCCTGTGACAACGACTCCAAAGGTCCTGCTTCCTGCAGCTC
CGGTGGCTCTGCCCAAGTACAACTTCAACTCGGAGGCCTGTTCCGGTTGT
TTCCTAAAAAAGTCCCCTCCCAAGACGGAAATTCGCACACTTTCACAGCC
ATTGGCTCCAGTTCAACCAGGTAAGCCCGATGGCTCTTCAGACATCGGCC
TGAATGTGCAGTTACCCTTCCGGGAATCCATTGCACAGACTGTGGCAAGT
CGTCTTGGTTTGCTCCAAGATACACTGCAAACCTCCAACACAAACACGAA
CGCACCAAACACTAAAACAATCGAACTTGGTCTCAACATAGCAATGAGCA
CATACTACACAACAAAGAATGCTGTAACCGGACATGTGAGCACGCAGACC
TCCAATTCGCAAACTCCGAGTGCCAACACAAAGATCGACTACAATGTGGG
CGTGGTCGAGAAGGCTTCACCGCCGGTTTTATCGCCATTGAACATCCGGT
TGAACGAGGACGTTATGAGACAAGCTATTACATATGGAAACACAATACCT
GGCCATGTGCCCTTGCCCAAT

BS17692.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12755-PB 1962 l(3)mbn-RB 1..763 17..779 3815 100 Plus
CG12755-PC 957 l(3)mbn-RC 1..763 17..779 3815 100 Plus
CG12755-PB 1962 l(3)mbn-RB 768..855 784..871 440 100 Plus
CG12755-PC 957 l(3)mbn-RC 768..855 784..871 440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-RB 2321 CG12755-RB 247..1101 17..871 4230 99.8 Plus
l(3)mbn-RD 1568 CG12755-RD 247..702 17..472 2280 100 Plus
l(3)mbn-RE 2150 CG12755-RE 247..700 17..470 2270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6125425..6125993 871..303 2785 99.3 Minus
3L 28110227 3L 6126354..6126499 302..157 730 100 Minus
3L 28110227 3L 6128357..6128469 162..50 550 99.1 Minus
Blast to na_te.dros performed on 2015-02-11 23:55:18 has no hits.

BS17692.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:50 Download gff for BS17692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12755-PC 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:42:41 Download gff for BS17692.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 247..1101 17..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:15 Download gff for BS17692.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 247..1101 17..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:15 Download gff for BS17692.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6128361..6128469 50..158 100 <- Minus
3L 6128529..6128561 17..49 100   Minus
3L 6125425..6125993 303..871 99 <- Minus
3L 6126354..6126497 159..302 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:42:41 Download gff for BS17692.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6118525..6119093 303..871 99 <- Minus
arm_3L 6119454..6119597 159..302 100 <- Minus
arm_3L 6121461..6121569 50..158 100 <- Minus
arm_3L 6121629..6121661 17..49 100   Minus

BS17692.pep Sequence

Translation from 16 to 972

> BS17692.pep
MSLKLMAFVCALLLLCTLTHVLSAATTVRPYKFGFTIDEQQHRAEKRDER
GIIMGEFGFITADGIYHVTVYATDEEGKFRIISMKSYPYAGPVGSKSVPV
TTTPKVLLPAAPVALPKYNFNSEACSGCFLKKSPPKTEIRTLSQPLAPVQ
PGKPDGSSDIGLNVQLPFRESIAQTVASRLGLLQDTLQTSNTNTNAPNTK
TIELGLNIAMSTYYTTKNAVTGHVSTQTSNSQTPSANTKIDYNVGVVEKA
SPPVYRPLNIRLNEDVMRQAITYGNTIPGHVPLPNQPLVETSLLPASQHN
IRMRALMQRFHLPVTFNP*

BS17692.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-PB 653 CG12755-PB 1..315 1..317 1537 95.3 Plus
l(3)mbn-PE 596 CG12755-PE 1..258 1..317 1068 71.3 Plus
l(3)mbn-PD 402 CG12755-PD 1..167 1..167 796 92.2 Plus