Clone Sequence Records
BS17693.3prime Sequence
820 bp (718 high quality bases) assembled on 2007-05-29
> BS17693.3prime
ATGGTCTAGAAAGCTTTTAGTGGGCGGGGCTGCGTGAGGCGTTTACCGCG
GGTGGCGAACCGGCGGCAGAGGAGGGTGGCCCCTGACCGCCTGGCAGTTG
GTACGGACTGAACCGCTGATACTGGCGCGGTCGCATATCGGGCGACGGCG
ATCCCGACGACGTCGACGAGGGCGTGGATGCAGTGGGCGGGGGTGGGGGC
GTCCGGTTGGCGGCCATCGCTGCGGCTGCCGCCTGCGCCTGCGCTTGGGC
CTGAGCGGCGGCTTGAGCGGCGGCAGCTTGCTGATTGGCGCTGGCCAAAA
AGCCGGCGGTAAGTTGGGGCCACTGCTGCTGGAACATGTGGAAGGCGCCC
AGGCCGGGGGGTGGCGGAGGTGGTCCGGCTGCCGCTGCTGCCGCTTGGTA
CATTTGCGGCATCATCAGCTGGGCATAGGGGGAGTTGCCGCCAAACATTT
GCAGATGCTGGCGTGCCTTCTCGAACAGCGCCATCGAGGAGGGATCACCC
TGAGCGGCAAACTGTTGCATCAGCGGATCGGGAAAGAGGCGCAGTGGCGA
GCGGAGCTGCTGCTCCAGGAGCAGCGCCTCCATCGGATCGCGATCGAAGT
CGGTGAGGCGGGAGGAGTCGCGGAAGCCCTTGGCGAACGGATTCGAATCG
ATCTTCAGCTTGGTGATCAGCTGATTCTGATAGGCCGTCACCGCGGTGAA
TACGGTTTCCGGGAATACGTAGGTCTTGTGATCCAAGTCCTGCAATTCCT
TGGGATTCGACGGAATGCTCTGTCCATGGCTCAAACGCACCAAATGAATT
CTGGGCTGGTAGCGATGCAT
BS17693.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6634-PA | 1743 | mid-RA | 940..1743 | 820..17 | 4020 | 100 | Minus |
CG6604-PA | 1983 | H15-RA | 1708..1760 | 331..279 | 165 | 92.4 | Minus |
CG6604-PA | 1983 | H15-RA | 1318..1361 | 715..672 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mid-RA | 2920 | CG6634-RA | 1219..2022 | 820..17 | 4020 | 100 | Minus |
mid-RB | 2139 | CG6634-RB | 1219..2022 | 820..17 | 4020 | 100 | Minus |
H15-RB | 2926 | CG6604-RB | 1457..2011 | 820..272 | 670 | 76.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5465909..5466712 | 820..17 | 4020 | 100 | Minus |
2L | 23513712 | 2L | 5413980..5414207 | 820..593 | 510 | 81.6 | Minus |
2L | 23513712 | 2L | 5415619..5415678 | 331..272 | 210 | 90 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:43:05 has no hits.
BS17693.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:55 Download gff for
BS17693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6634-PA | 940..1743 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:39 Download gff for
BS17693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 1219..2025 | 11..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:15:41 Download gff for
BS17693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 1219..2025 | 11..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:15:41 Download gff for
BS17693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5465909..5466715 | 11..820 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:39 Download gff for
BS17693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5465909..5466715 | 11..820 | 99 | | Minus |
BS17693.5prime Sequence
903 bp (723 high quality bases) assembled on 2007-05-29
> BS17693.5prime
GAAGTTATCAGTCGACATGCTGGTTGGATCTCATCCGTATTTGTGCAACG
GGGTGCCCGCCGCCCCTGCAGCACCAAATGCCAGTGGACAGACAACAACA
ACGGCTAGCAAAAGTGCCGCCGGCTCAGCGACGGACTTTTCCATCGCCGC
CATCATGGCTCGCGAAGATGCCTCCAGTCGGGAGTCCTCCATTCGCAGTG
CAAGTCCCATTTCGGTGGAGGATGAGGTTGACGTTGATGTGGTCGACTGC
AGCGATGCCGAGGAGCCACCGACTAAGGCGCGTCGTTTGAACCATCATCA
GCACCACCAGCATCACCAGCACCACCACAATAACAACAATAACAACAACA
ACAACAATGTGGCACACAAGAGTCGCAACAGCGGTGGCGCCGTGGCACAA
ACAGCTTCCGCCGAATCCCAACTGAACACCAGCTCGACCAGCAGCCAAGG
ACGCTGCTCCACACCGCCCCAATCCCCGGGAACGGAGGACAGCGAGGAGC
GTTTAACACCGGAACCGGTGCAGAAGGCACCCAAAATTGTCGGCTCCTGC
AATTGCGACGATCTGAAGCCGGTGCAGTGCCATCTGGAGACCAAAGAGCT
GTGGGATCGCTTTCACGATCTCGGCACCGAGATGATCATCACCAAAACGG
GCAGACGCATGTTCCCCACTGTGCGCGTCAGTTTCTCGGGTCCGCTGAGG
CAAATCCAGCCCGCCGATCGCTACGCCGTCCTCATGGACATCATCCCCAT
GGACTCGAAGCGGTATCGGTACGCCTACCATCGCTCCGCATGGCTGGTGG
CCGGGCAAGCCGACCCCGCCCCCCAGCACGCCTCTACGCCCATCCTGACA
GTCCCTTCACCTGCGAGGCGCTCCGCAAACAAGTATCTCCTTCGAGAAGG
TGA
BS17693.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6634-PA | 1743 | mid-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
CG6634-PA | 1743 | mid-RA | 804..869 | 819..884 | 305 | 98.4 | Plus |
CG5575-PA | 1806 | ken-RA | 745..803 | 299..357 | 145 | 89.8 | Plus |
CG6604-PA | 1983 | H15-RA | 355..386 | 221..252 | 135 | 96.8 | Plus |
CG6604-PA | 1983 | H15-RA | 889..950 | 632..693 | 135 | 88.7 | Plus |
CG11202-PA | 2100 | org-1-RA | 637..683 | 623..669 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mid-RA | 2920 | CG6634-RA | 280..1168 | 17..903 | 4335 | 99.4 | Plus |
mid-RB | 2139 | CG6634-RB | 280..1168 | 17..903 | 4335 | 99.4 | Plus |
H15-RB | 2926 | CG6604-RB | 1031..1406 | 530..903 | 495 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:25:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5463819..5464269 | 204..654 | 2255 | 100 | Plus |
2L | 23513712 | 2L | 5465217..5465470 | 652..903 | 1110 | 97.6 | Plus |
2L | 23513712 | 2L | 5461918..5462106 | 17..205 | 945 | 100 | Plus |
2L | 23513712 | 2L | 5407693..5407817 | 530..654 | 280 | 81.6 | Plus |
2L | 23513712 | 2L | 5413009..5413161 | 652..804 | 210 | 75.8 | Plus |
X | 23542271 | X | 8451685..8451770 | 669..584 | 205 | 82.6 | Minus |
2R | 25286936 | 2R | 23875716..23875774 | 299..357 | 205 | 89.8 | Plus |
Blast to na_te.dros performed 2015-02-10 17:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1531..1613 | 291..380 | 145 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2491..2546 | 291..345 | 133 | 73.2 | Plus |
BS17693.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:59 Download gff for
BS17693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6634-PA | 1..888 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:39:49 Download gff for
BS17693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 275..1167 | 12..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:04 Download gff for
BS17693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 275..1167 | 12..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:04 Download gff for
BS17693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5465220..5465469 | 655..902 | 98 | | Plus |
2L | 5461913..5462104 | 12..203 | 98 | -> | Plus |
2L | 5463819..5464269 | 204..654 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:39:49 Download gff for
BS17693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5461913..5462104 | 12..203 | 98 | -> | Plus |
arm_2L | 5463819..5464269 | 204..654 | 100 | -> | Plus |
arm_2L | 5465220..5465469 | 655..902 | 98 | | Plus |
BS17693.complete Sequence
1775 bp assembled on 2008-08-15
GenBank Submission: KX805729
> BS17693.complete
GAAGTTATCAGTCGACATGCTGGTTGGATCTCATCCGTATTTGTGCAACG
GGGTGCCCGCCGCCCCTGCAGCACCAAATGCCAGTGGACAGACAACAACA
ACGGCTAGCAAAAGTGCCGCCGGCTCAGCGACGGACTTTTCCATCGCCGC
CATCATGGCTCGCGAAGATGCCTCCAGTCGGGAGTCCTCCATTCGCAGTG
CAAGTCCCATTTCGGTGGAGGATGAGGTTGACGTTGATGTGGTCGACTGC
AGCGATGCCGAGGAGCCACCGACTAAGGCGCGTCGTTTGAACCATCATCA
GCACCACCAGCATCACCAGCACCACCACAATAACAACAATAACAACAACA
ACAACAATGTGGCACACAAGAGTCGCAACAGCGGTGGCGCCGTGGCACAA
ACAGCTTCCGCCGAATCCCAACTGAACACCAGCTCGACCAGCAGCCAAGG
ACGCTGCTCCACACCGCCCCAATCCCCGGGAACGGAGGACAGCGAGGAGC
GTTTAACACCGGAACCGGTGCAGAAGGCACCCAAAATTGTCGGCTCCTGC
AATTGCGACGATCTGAAGCCGGTGCAGTGCCATCTGGAGACCAAAGAGCT
GTGGGATCGCTTTCACGATCTCGGCACCGAGATGATCATCACCAAAACGG
GCAGACGCATGTTCCCCACTGTGCGCGTCAGTTTCTCGGGTCCGCTGAGG
CAAATCCAGCCCGCCGATCGCTACGCCGTCCTCATGGACATCATCCCCAT
GGACTCGAAGCGGTATCGGTACGCCTACCATCGCTCCGCATGGCTGGTGG
CCGGCAAGGCCGACCCCGCCCCCCCAGCACGCCTCTACGCCCATCCTGAC
AGTCCCTTCAGCTGCGAGGCGCTCCGCAAACAAGTTATCTCCTTCGAGAA
GGTGAAGCTGACTAATAACGAAATGGATAAGAACGGACAGATCGTTTTGA
ACTCGATGCATCGCTACCAGCCCAGAATTCATTTGGTGCGTTTGAGCCAT
GGACAGAGCATTCCGTCGAATCCCAAGGAATTGCAGGACTTGGATCACAA
GACCTACGTATTCCCGGAAACCGTATTCACCGCGGTGACGGCCTATCAGA
ATCAGCTGATCACCAAGCTGAAGATCGATTCGAATCCGTTCGCCAAGGGC
TTCCGCGACTCCTCCCGCCTCACCGACTTCGATCGCGATCCGATGGAGGC
GCTGCTCCTGGAGCAGCAGCTCCGCTCGCCACTGCGCCTCTTTCCCGATC
CGCTGATGCAACAGTTTGCCGCTCAGGGTGATCCCTCCTCGATGGCGCTG
TTCGAGAAGGCACGCCAGCATCTGCAAATGTTTGGCGGCAACTCCCCCTA
TGCCCAGCTGATGATGCCGCAAATGTACCAAGCGGCAGCAGCGGCAGCCG
GACCACCTCCGCCACCCCCCGGCCTGGGCGCCTTCCACATGTTCCAGCAG
CAGTGGCCCCAACTTACCGCCGGCTTTTTGGCCAGCGCCAATCAGCAAGC
TGCCGCCGCTCAAGCCGCCGCTCAGGCCCAAGCGCAGGCGCAGGCGGCAG
CCGCAGCGATGGCCGCCAACCGGACGCCCCCACCCCCGCCCACTGCATCC
ACGCCCTCGTCGACGTCGTCGGGATCGCCGTCGCCCGATATGCGACCGCG
CCAGTATCAGCGGTTCAGTCCGTACCAACTGCCAGGCGGTCAGGGGCCAC
CCTCCTCTGCCGCCGGTTCGCCACCCGCGGTAAACGCCTCACGCAGCCCC
GCCCACTAAAAGCTTTCTAGACCAT
BS17693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mid-RA | 1743 | CG6634-PA | 1..1743 | 17..1759 | 8715 | 100 | Plus |
mid-RB | 1743 | CG6634-PB | 1..1743 | 17..1759 | 8715 | 100 | Plus |
H15-RB | 1980 | CG6604-PB | 784..1595 | 530..1335 | 1200 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mid-RA | 2920 | CG6634-RA | 280..2022 | 17..1759 | 8715 | 100 | Plus |
mid-RB | 2139 | CG6634-RB | 280..2022 | 17..1759 | 8715 | 100 | Plus |
H15-RB | 2926 | CG6604-RB | 1031..1842 | 530..1335 | 1200 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5465891..5466712 | 938..1759 | 4110 | 100 | Plus |
2L | 23513712 | 2L | 5463819..5464269 | 204..654 | 2255 | 100 | Plus |
2L | 23513712 | 2L | 5465217..5465505 | 652..940 | 1445 | 100 | Plus |
2L | 23513712 | 2L | 5461918..5462106 | 17..205 | 945 | 100 | Plus |
2L | 23513712 | 2L | 5413962..5414207 | 938..1183 | 540 | 81.3 | Plus |
2L | 23513712 | 2L | 5413009..5413297 | 652..940 | 365 | 75.1 | Plus |
2L | 23513712 | 2L | 5407693..5407817 | 530..654 | 280 | 81.6 | Plus |
2L | 23513712 | 2L | 5415619..5415678 | 1445..1504 | 210 | 90 | Plus |
X | 23542271 | X | 8451685..8451770 | 669..584 | 205 | 82.6 | Minus |
2R | 25286936 | 2R | 23875716..23875774 | 299..357 | 205 | 89.8 | Plus |
Blast to na_te.dros performed 2014-11-28 01:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1531..1613 | 291..380 | 145 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2491..2546 | 291..345 | 133 | 73.2 | Plus |
BS17693.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:42:19 Download gff for
BS17693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RA | 273..2023 | 12..1765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:07 Download gff for
BS17693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 280..2020 | 17..1757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:13 Download gff for
BS17693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RA | 278..2018 | 17..1757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:40 Download gff for
BS17693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 280..2020 | 17..1757 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:40 Download gff for
BS17693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5461918..5462104 | 17..203 | 100 | -> | Plus |
2L | 5463819..5464269 | 204..654 | 100 | -> | Plus |
2L | 5465220..5465505 | 655..940 | 100 | -> | Plus |
2L | 5465894..5466710 | 941..1757 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:07 Download gff for
BS17693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5461918..5462104 | 17..203 | 100 | -> | Plus |
arm_2L | 5463819..5464269 | 204..654 | 100 | -> | Plus |
arm_2L | 5465220..5465505 | 655..940 | 100 | -> | Plus |
arm_2L | 5465894..5466710 | 941..1757 | 100 | | Plus |
BS17693.pep Sequence
Translation from 16 to 1758
> BS17693.pep
MLVGSHPYLCNGVPAAPAAPNASGQTTTTASKSAAGSATDFSIAAIMARE
DASSRESSIRSASPISVEDEVDVDVVDCSDAEEPPTKARRLNHHQHHQHH
QHHHNNNNNNNNNNVAHKSRNSGGAVAQTASAESQLNTSSTSSQGRCSTP
PQSPGTEDSEERLTPEPVQKAPKIVGSCNCDDLKPVQCHLETKELWDRFH
DLGTEMIITKTGRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRY
RYAYHRSAWLVAGKADPAPPARLYAHPDSPFSCEALRKQVISFEKVKLTN
NEMDKNGQIVLNSMHRYQPRIHLVRLSHGQSIPSNPKELQDLDHKTYVFP
ETVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFDRDPMEALLLEQ
QLRSPLRLFPDPLMQQFAAQGDPSSMALFEKARQHLQMFGGNSPYAQLMM
PQMYQAAAAAAGPPPPPPGLGAFHMFQQQWPQLTAGFLASANQQAAAAQA
AAQAQAQAQAAAAAMAANRTPPPPPTASTPSSTSSGSPSPDMRPRQYQRF
SPYQLPGGQGPPSSAAGSPPAVNASRSPAH*
BS17693.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mid-PA | 580 | CG6634-PA | 1..580 | 1..580 | 3047 | 100 | Plus |
mid-PB | 580 | CG6634-PB | 1..580 | 1..580 | 3047 | 100 | Plus |
H15-PB | 659 | CG6604-PB | 78..659 | 38..578 | 1717 | 60.6 | Plus |
H15-PA | 660 | CG6604-PA | 78..660 | 38..578 | 1707 | 60.5 | Plus |
org-1-PB | 699 | CG11202-PB | 200..592 | 190..576 | 620 | 40 | Plus |