Clone BS17693 Report

Search the DGRC for BS17693

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:176
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptmid-RA
Protein status:BS17693.pep: full length peptide match
Sequenced Size:1775

Clone Sequence Records

BS17693.3prime Sequence

820 bp (718 high quality bases) assembled on 2007-05-29

> BS17693.3prime
ATGGTCTAGAAAGCTTTTAGTGGGCGGGGCTGCGTGAGGCGTTTACCGCG
GGTGGCGAACCGGCGGCAGAGGAGGGTGGCCCCTGACCGCCTGGCAGTTG
GTACGGACTGAACCGCTGATACTGGCGCGGTCGCATATCGGGCGACGGCG
ATCCCGACGACGTCGACGAGGGCGTGGATGCAGTGGGCGGGGGTGGGGGC
GTCCGGTTGGCGGCCATCGCTGCGGCTGCCGCCTGCGCCTGCGCTTGGGC
CTGAGCGGCGGCTTGAGCGGCGGCAGCTTGCTGATTGGCGCTGGCCAAAA
AGCCGGCGGTAAGTTGGGGCCACTGCTGCTGGAACATGTGGAAGGCGCCC
AGGCCGGGGGGTGGCGGAGGTGGTCCGGCTGCCGCTGCTGCCGCTTGGTA
CATTTGCGGCATCATCAGCTGGGCATAGGGGGAGTTGCCGCCAAACATTT
GCAGATGCTGGCGTGCCTTCTCGAACAGCGCCATCGAGGAGGGATCACCC
TGAGCGGCAAACTGTTGCATCAGCGGATCGGGAAAGAGGCGCAGTGGCGA
GCGGAGCTGCTGCTCCAGGAGCAGCGCCTCCATCGGATCGCGATCGAAGT
CGGTGAGGCGGGAGGAGTCGCGGAAGCCCTTGGCGAACGGATTCGAATCG
ATCTTCAGCTTGGTGATCAGCTGATTCTGATAGGCCGTCACCGCGGTGAA
TACGGTTTCCGGGAATACGTAGGTCTTGTGATCCAAGTCCTGCAATTCCT
TGGGATTCGACGGAATGCTCTGTCCATGGCTCAAACGCACCAAATGAATT
CTGGGCTGGTAGCGATGCAT

BS17693.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6634-PA 1743 mid-RA 940..1743 820..17 4020 100 Minus
CG6604-PA 1983 H15-RA 1708..1760 331..279 165 92.4 Minus
CG6604-PA 1983 H15-RA 1318..1361 715..672 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
mid-RA 2920 CG6634-RA 1219..2022 820..17 4020 100 Minus
mid-RB 2139 CG6634-RB 1219..2022 820..17 4020 100 Minus
H15-RB 2926 CG6604-RB 1457..2011 820..272 670 76.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5465909..5466712 820..17 4020 100 Minus
2L 23513712 2L 5413980..5414207 820..593 510 81.6 Minus
2L 23513712 2L 5415619..5415678 331..272 210 90 Minus
Blast to na_te.dros performed on 2015-02-13 15:43:05 has no hits.

BS17693.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:55 Download gff for BS17693.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6634-PA 940..1743 17..820 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:39 Download gff for BS17693.3prime
Subject Subject Range Query Range Percent Splice Strand
mid-RB 1219..2025 11..820 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:15:41 Download gff for BS17693.3prime
Subject Subject Range Query Range Percent Splice Strand
mid-RB 1219..2025 11..820 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:15:41 Download gff for BS17693.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5465909..5466715 11..820 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:39 Download gff for BS17693.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5465909..5466715 11..820 99   Minus

BS17693.5prime Sequence

903 bp (723 high quality bases) assembled on 2007-05-29

> BS17693.5prime
GAAGTTATCAGTCGACATGCTGGTTGGATCTCATCCGTATTTGTGCAACG
GGGTGCCCGCCGCCCCTGCAGCACCAAATGCCAGTGGACAGACAACAACA
ACGGCTAGCAAAAGTGCCGCCGGCTCAGCGACGGACTTTTCCATCGCCGC
CATCATGGCTCGCGAAGATGCCTCCAGTCGGGAGTCCTCCATTCGCAGTG
CAAGTCCCATTTCGGTGGAGGATGAGGTTGACGTTGATGTGGTCGACTGC
AGCGATGCCGAGGAGCCACCGACTAAGGCGCGTCGTTTGAACCATCATCA
GCACCACCAGCATCACCAGCACCACCACAATAACAACAATAACAACAACA
ACAACAATGTGGCACACAAGAGTCGCAACAGCGGTGGCGCCGTGGCACAA
ACAGCTTCCGCCGAATCCCAACTGAACACCAGCTCGACCAGCAGCCAAGG
ACGCTGCTCCACACCGCCCCAATCCCCGGGAACGGAGGACAGCGAGGAGC
GTTTAACACCGGAACCGGTGCAGAAGGCACCCAAAATTGTCGGCTCCTGC
AATTGCGACGATCTGAAGCCGGTGCAGTGCCATCTGGAGACCAAAGAGCT
GTGGGATCGCTTTCACGATCTCGGCACCGAGATGATCATCACCAAAACGG
GCAGACGCATGTTCCCCACTGTGCGCGTCAGTTTCTCGGGTCCGCTGAGG
CAAATCCAGCCCGCCGATCGCTACGCCGTCCTCATGGACATCATCCCCAT
GGACTCGAAGCGGTATCGGTACGCCTACCATCGCTCCGCATGGCTGGTGG
CCGGGCAAGCCGACCCCGCCCCCCAGCACGCCTCTACGCCCATCCTGACA
GTCCCTTCACCTGCGAGGCGCTCCGCAAACAAGTATCTCCTTCGAGAAGG
TGA

BS17693.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6634-PA 1743 mid-RA 1..788 17..804 3940 100 Plus
CG6634-PA 1743 mid-RA 804..869 819..884 305 98.4 Plus
CG5575-PA 1806 ken-RA 745..803 299..357 145 89.8 Plus
CG6604-PA 1983 H15-RA 355..386 221..252 135 96.8 Plus
CG6604-PA 1983 H15-RA 889..950 632..693 135 88.7 Plus
CG11202-PA 2100 org-1-RA 637..683 623..669 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
mid-RA 2920 CG6634-RA 280..1168 17..903 4335 99.4 Plus
mid-RB 2139 CG6634-RB 280..1168 17..903 4335 99.4 Plus
H15-RB 2926 CG6604-RB 1031..1406 530..903 495 76.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5463819..5464269 204..654 2255 100 Plus
2L 23513712 2L 5465217..5465470 652..903 1110 97.6 Plus
2L 23513712 2L 5461918..5462106 17..205 945 100 Plus
2L 23513712 2L 5407693..5407817 530..654 280 81.6 Plus
2L 23513712 2L 5413009..5413161 652..804 210 75.8 Plus
X 23542271 X 8451685..8451770 669..584 205 82.6 Minus
2R 25286936 2R 23875716..23875774 299..357 205 89.8 Plus
Blast to na_te.dros performed 2015-02-10 17:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1531..1613 291..380 145 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2491..2546 291..345 133 73.2 Plus

BS17693.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:20:59 Download gff for BS17693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6634-PA 1..888 17..902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:39:49 Download gff for BS17693.5prime
Subject Subject Range Query Range Percent Splice Strand
mid-RB 275..1167 12..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:04 Download gff for BS17693.5prime
Subject Subject Range Query Range Percent Splice Strand
mid-RB 275..1167 12..902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:04 Download gff for BS17693.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5465220..5465469 655..902 98   Plus
2L 5461913..5462104 12..203 98 -> Plus
2L 5463819..5464269 204..654 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:39:49 Download gff for BS17693.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5461913..5462104 12..203 98 -> Plus
arm_2L 5463819..5464269 204..654 100 -> Plus
arm_2L 5465220..5465469 655..902 98   Plus

BS17693.complete Sequence

1775 bp assembled on 2008-08-15

GenBank Submission: KX805729

> BS17693.complete
GAAGTTATCAGTCGACATGCTGGTTGGATCTCATCCGTATTTGTGCAACG
GGGTGCCCGCCGCCCCTGCAGCACCAAATGCCAGTGGACAGACAACAACA
ACGGCTAGCAAAAGTGCCGCCGGCTCAGCGACGGACTTTTCCATCGCCGC
CATCATGGCTCGCGAAGATGCCTCCAGTCGGGAGTCCTCCATTCGCAGTG
CAAGTCCCATTTCGGTGGAGGATGAGGTTGACGTTGATGTGGTCGACTGC
AGCGATGCCGAGGAGCCACCGACTAAGGCGCGTCGTTTGAACCATCATCA
GCACCACCAGCATCACCAGCACCACCACAATAACAACAATAACAACAACA
ACAACAATGTGGCACACAAGAGTCGCAACAGCGGTGGCGCCGTGGCACAA
ACAGCTTCCGCCGAATCCCAACTGAACACCAGCTCGACCAGCAGCCAAGG
ACGCTGCTCCACACCGCCCCAATCCCCGGGAACGGAGGACAGCGAGGAGC
GTTTAACACCGGAACCGGTGCAGAAGGCACCCAAAATTGTCGGCTCCTGC
AATTGCGACGATCTGAAGCCGGTGCAGTGCCATCTGGAGACCAAAGAGCT
GTGGGATCGCTTTCACGATCTCGGCACCGAGATGATCATCACCAAAACGG
GCAGACGCATGTTCCCCACTGTGCGCGTCAGTTTCTCGGGTCCGCTGAGG
CAAATCCAGCCCGCCGATCGCTACGCCGTCCTCATGGACATCATCCCCAT
GGACTCGAAGCGGTATCGGTACGCCTACCATCGCTCCGCATGGCTGGTGG
CCGGCAAGGCCGACCCCGCCCCCCCAGCACGCCTCTACGCCCATCCTGAC
AGTCCCTTCAGCTGCGAGGCGCTCCGCAAACAAGTTATCTCCTTCGAGAA
GGTGAAGCTGACTAATAACGAAATGGATAAGAACGGACAGATCGTTTTGA
ACTCGATGCATCGCTACCAGCCCAGAATTCATTTGGTGCGTTTGAGCCAT
GGACAGAGCATTCCGTCGAATCCCAAGGAATTGCAGGACTTGGATCACAA
GACCTACGTATTCCCGGAAACCGTATTCACCGCGGTGACGGCCTATCAGA
ATCAGCTGATCACCAAGCTGAAGATCGATTCGAATCCGTTCGCCAAGGGC
TTCCGCGACTCCTCCCGCCTCACCGACTTCGATCGCGATCCGATGGAGGC
GCTGCTCCTGGAGCAGCAGCTCCGCTCGCCACTGCGCCTCTTTCCCGATC
CGCTGATGCAACAGTTTGCCGCTCAGGGTGATCCCTCCTCGATGGCGCTG
TTCGAGAAGGCACGCCAGCATCTGCAAATGTTTGGCGGCAACTCCCCCTA
TGCCCAGCTGATGATGCCGCAAATGTACCAAGCGGCAGCAGCGGCAGCCG
GACCACCTCCGCCACCCCCCGGCCTGGGCGCCTTCCACATGTTCCAGCAG
CAGTGGCCCCAACTTACCGCCGGCTTTTTGGCCAGCGCCAATCAGCAAGC
TGCCGCCGCTCAAGCCGCCGCTCAGGCCCAAGCGCAGGCGCAGGCGGCAG
CCGCAGCGATGGCCGCCAACCGGACGCCCCCACCCCCGCCCACTGCATCC
ACGCCCTCGTCGACGTCGTCGGGATCGCCGTCGCCCGATATGCGACCGCG
CCAGTATCAGCGGTTCAGTCCGTACCAACTGCCAGGCGGTCAGGGGCCAC
CCTCCTCTGCCGCCGGTTCGCCACCCGCGGTAAACGCCTCACGCAGCCCC
GCCCACTAAAAGCTTTCTAGACCAT

BS17693.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
mid-RA 1743 CG6634-PA 1..1743 17..1759 8715 100 Plus
mid-RB 1743 CG6634-PB 1..1743 17..1759 8715 100 Plus
H15-RB 1980 CG6604-PB 784..1595 530..1335 1200 77.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
mid-RA 2920 CG6634-RA 280..2022 17..1759 8715 100 Plus
mid-RB 2139 CG6634-RB 280..2022 17..1759 8715 100 Plus
H15-RB 2926 CG6604-RB 1031..1842 530..1335 1200 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5465891..5466712 938..1759 4110 100 Plus
2L 23513712 2L 5463819..5464269 204..654 2255 100 Plus
2L 23513712 2L 5465217..5465505 652..940 1445 100 Plus
2L 23513712 2L 5461918..5462106 17..205 945 100 Plus
2L 23513712 2L 5413962..5414207 938..1183 540 81.3 Plus
2L 23513712 2L 5413009..5413297 652..940 365 75.1 Plus
2L 23513712 2L 5407693..5407817 530..654 280 81.6 Plus
2L 23513712 2L 5415619..5415678 1445..1504 210 90 Plus
X 23542271 X 8451685..8451770 669..584 205 82.6 Minus
2R 25286936 2R 23875716..23875774 299..357 205 89.8 Plus
Blast to na_te.dros performed 2014-11-28 01:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1531..1613 291..380 145 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2491..2546 291..345 133 73.2 Plus

BS17693.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:42:19 Download gff for BS17693.complete
Subject Subject Range Query Range Percent Splice Strand
mid-RA 273..2023 12..1765 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:07 Download gff for BS17693.complete
Subject Subject Range Query Range Percent Splice Strand
mid-RB 280..2020 17..1757 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:13 Download gff for BS17693.complete
Subject Subject Range Query Range Percent Splice Strand
mid-RA 278..2018 17..1757 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:40 Download gff for BS17693.complete
Subject Subject Range Query Range Percent Splice Strand
mid-RB 280..2020 17..1757 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:40 Download gff for BS17693.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5461918..5462104 17..203 100 -> Plus
2L 5463819..5464269 204..654 100 -> Plus
2L 5465220..5465505 655..940 100 -> Plus
2L 5465894..5466710 941..1757 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:07 Download gff for BS17693.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5461918..5462104 17..203 100 -> Plus
arm_2L 5463819..5464269 204..654 100 -> Plus
arm_2L 5465220..5465505 655..940 100 -> Plus
arm_2L 5465894..5466710 941..1757 100   Plus

BS17693.pep Sequence

Translation from 16 to 1758

> BS17693.pep
MLVGSHPYLCNGVPAAPAAPNASGQTTTTASKSAAGSATDFSIAAIMARE
DASSRESSIRSASPISVEDEVDVDVVDCSDAEEPPTKARRLNHHQHHQHH
QHHHNNNNNNNNNNVAHKSRNSGGAVAQTASAESQLNTSSTSSQGRCSTP
PQSPGTEDSEERLTPEPVQKAPKIVGSCNCDDLKPVQCHLETKELWDRFH
DLGTEMIITKTGRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRY
RYAYHRSAWLVAGKADPAPPARLYAHPDSPFSCEALRKQVISFEKVKLTN
NEMDKNGQIVLNSMHRYQPRIHLVRLSHGQSIPSNPKELQDLDHKTYVFP
ETVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFDRDPMEALLLEQ
QLRSPLRLFPDPLMQQFAAQGDPSSMALFEKARQHLQMFGGNSPYAQLMM
PQMYQAAAAAAGPPPPPPGLGAFHMFQQQWPQLTAGFLASANQQAAAAQA
AAQAQAQAQAAAAAMAANRTPPPPPTASTPSSTSSGSPSPDMRPRQYQRF
SPYQLPGGQGPPSSAAGSPPAVNASRSPAH*

BS17693.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
mid-PA 580 CG6634-PA 1..580 1..580 3047 100 Plus
mid-PB 580 CG6634-PB 1..580 1..580 3047 100 Plus
H15-PB 659 CG6604-PB 78..659 38..578 1717 60.6 Plus
H15-PA 660 CG6604-PA 78..660 38..578 1707 60.5 Plus
org-1-PB 699 CG11202-PB 200..592 190..576 620 40 Plus