Clone BS17707 Report

Search the DGRC for BS17707

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:177
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptGlcAT-P-RB
Protein status:BS17707.pep: full length peptide match
Sequenced Size:983

Clone Sequence Records

BS17707.complete Sequence

983 bp assembled on 2010-02-09

GenBank Submission: KX801151

> BS17707.complete
GAAGTTATCAGTCGACATGAAGGGCGGCAACTACACCAGCCTCGGCACGT
GCAGTGGCATCAATGTCAGTGGCAACGTGGCCGGCACCCGCAAGATGTCA
CTGGGCAAATCCATTAAAATGTACCTGACCATTTTCATCCTGACCACCTG
CATTTATATGGCGCTCTATCAGTACCACATATCCCGTGAACCCTTCGCCG
CCAGCGAGGTTGTCAAGCCGCCCCTGTACATAATCACGCCCACCTACCGA
CGACCCGAGCAGCTGGCGGAGCTCACCCGGCTGGGATATACGCTGAAACA
TGTGGTGAATCTACTCTGGCTGGTCATCGAGGATGCCAACAAGACGAATC
CGCTGGTGGGCCACACTTTGGACCGCATCGGAGTGCCCTACGAGTACATG
GTGGCGCCCATGCCGGAGAAGTACAAGCAGACGAAGAAGGCCAAGCCGCG
TGGCGTCTCCAATCGGAATCGGGGCCTCGAGTATCTGCGCGAGCATGCCA
CCGAGGGAGTGCTCTACTTTGCCGACGACGACAACACCTACGACATTAGC
ATATTCGAGCAGATGCGCTACATCAGCAAGGTGGCCATGTGGCCAGTGGG
CCTGGTCACAAAGACCGGAGTGAGCAGTCCCATTATTCAGGCGGGCAAGC
TGGTTGGCTACTACGATGGCTGGATCGGAGGACGCAAGTATCCAGTGGAC
ATGGCTGGATTTGCAGTGAGCGTCAAGTTCTTGAAGGAGCGTCCCAATGC
CCAGATGCCCTTCAAGCCGGGATACGAGGAGGATGGGTTTCTCCGCAGTT
TGGCACCACTTGACGATGCGGAAATCGAGTTGCTGGCGGACGAGTGCAGA
GATATTCTCACGTGGCACACGCAGACGAAGAAGAACGCACCCGCTCAGGC
GCTGAACAGGACGCGCTACAAGAACACGAACCTGGAGCACATAGATAGGC
TACTGGTGCGGCCATAGAAGCTTTCTAGACCAT

BS17707.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-P-RE 951 CG6207-PE 1..951 17..967 4755 100 Plus
GlcAT-P-RB 951 CG6207-PB 1..951 17..967 4755 100 Plus
GlcAT-P-RC 951 CG6207-PC 1..951 17..967 4755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-P-RE 3161 CG6207-RE 747..1697 17..967 4755 100 Plus
GlcAT-P-RB 3427 CG6207-RB 1013..1963 17..967 4755 100 Plus
GlcAT-P-RC 3266 CG6207-RC 852..1802 17..967 4755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11178648..11178941 853..560 1470 100 Minus
3L 28110227 3L 11183634..11183834 217..17 1005 100 Minus
3L 28110227 3L 11179530..11179718 404..216 945 100 Minus
3L 28110227 3L 11179224..11179382 562..404 795 100 Minus
3L 28110227 3L 11178418..11178531 967..854 570 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:07:34 has no hits.

BS17707.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:57 Download gff for BS17707.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RB 1..951 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:18 Download gff for BS17707.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RB 980..1930 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:58 Download gff for BS17707.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RC 852..1802 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:58 Download gff for BS17707.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RB 980..1930 17..967 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:25 Download gff for BS17707.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RC 852..1802 17..967 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:25 Download gff for BS17707.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11179224..11179381 405..562 100 <- Minus
3L 11179530..11179716 218..404 100 <- Minus
3L 11183634..11183834 17..217 100   Minus
3L 11178418..11178531 854..967 100 <- Minus
3L 11178648..11178938 563..853 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:58 Download gff for BS17707.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11171518..11171631 854..967 100 <- Minus
arm_3L 11171748..11172038 563..853 100 <- Minus
arm_3L 11172324..11172481 405..562 100 <- Minus
arm_3L 11172630..11172816 218..404 100 <- Minus
arm_3L 11176734..11176934 17..217 100   Minus

BS17707.3prime Sequence

878 bp (778 high quality bases) assembled on 2007-05-29

> BS17707.3prime
ATGGTCTAGAAAGCTTCTATGGCCGCACCAGTAGCCTATCTATGTGCTCC
AGGTTCGTGTTCTTGTAGCGCGTCCTGTTCAGCGCCTGAGCGGGTGCGTT
CTTCTTCGTCTGCGTGTGCCACGTGAGAATATCTCTGCACTCGTCCGCCA
GCAACTCGATTTCCGCATCGTCAAGTGGTGCCAAACTGCGGAGAAACCCA
TCCTCCTCGTATCCCGGCTTGAAGGGCATCTGGGCATTGGGACGCTCCTT
CAAGAACTTGACGCTCACTGCAAATCCAGCCATGTCCACTGGATACTTGC
GTCCTCCGATCCAGCCATCGTAGTAGCCAACCAGCTTGCCCGCCTGAATA
ATGGGACTGCTCACTCCGGTCTTTGTGACCAGGCCCACTGGCCACATGGC
CACCTTGCTGATGTAGCGCATCTGCTCGAATATGCTAATGTCGTAGGTGT
TGTCGTCGTCGGCAAAGTAGAGCACTCCCTCGGTGGCATGCTCGCGCAGA
TACTCGAGGCCCCGATTCCGATTGGAGACGCCACGCGGCTTGGCCTTCTT
CGTCTGCTTGTACTTCTCCGGCATGGGCGCCACCATGTACTCGTAGGGCA
CTCCGATGCGGTCCAAAGTGTGGCCCACCAGCGGATTCGTCTTGTTGGCA
TCCTCGATGACCAGCCAGAGTAGATTCACCACATGTTTCAGCGTATATCC
CAGCCGGGTGAGCTCCGCCAGCTGCTCGGGTCGTCGGTAGGTGGGCGTGA
TTATGTACAGGGGCGGCTTGACAACCTCGCTGGCGGCGAAAGGTTCACGG
GATATGTGGTACTGATAGAGCGCCATATAAATGCAGGTGGTCAAGATGAA
AATGGTCAGGTACATTTTTATGGATTTG

BS17707.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6207-PC 951 GlcAT-P-RC 90..951 878..17 4235 99.6 Minus
CG6207-PB 951 GlcAT-P-RB 90..951 878..17 4235 99.6 Minus
CG6207-PA 1440 GlcAT-P-RA 691..1440 766..17 3750 100 Minus
CG6207-PA 1440 GlcAT-P-RA 90..202 878..766 490 97.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-P-RE 3161 CG6207-RE 836..1697 878..17 4265 99.7 Minus
GlcAT-P-RB 3427 CG6207-RB 1102..1963 878..17 4265 99.7 Minus
GlcAT-P-RC 3266 CG6207-RC 941..1802 878..17 4265 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11178648..11178941 131..424 1470 100 Plus
3L 28110227 3L 11179530..11179718 580..768 945 100 Plus
3L 28110227 3L 11179224..11179382 422..580 795 100 Plus
3L 28110227 3L 11178418..11178531 17..130 570 100 Plus
3L 28110227 3L 11183634..11183745 767..878 515 97.3 Plus
Blast to na_te.dros performed 2015-02-11 16:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 4183..4211 842..870 109 86.2 Plus

BS17707.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:22:46 Download gff for BS17707.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6207-PB 90..951 17..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:02 Download gff for BS17707.3prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RC 941..1802 17..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:54 Download gff for BS17707.3prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RC 941..1802 17..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:54 Download gff for BS17707.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11178418..11178531 17..130 100 <- Plus
3L 11178648..11178938 131..421 100 <- Plus
3L 11179224..11179381 422..579 100 <- Plus
3L 11179530..11179716 580..766 100 <- Plus
3L 11183634..11183745 767..878 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:02 Download gff for BS17707.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11171518..11171631 17..130 100 <- Plus
arm_3L 11171748..11172038 131..421 100 <- Plus
arm_3L 11172324..11172481 422..579 100 <- Plus
arm_3L 11172630..11172816 580..766 100 <- Plus
arm_3L 11176734..11176845 767..878 97   Plus

BS17707.5prime Sequence

819 bp (733 high quality bases) assembled on 2007-05-29

> BS17707.5prime
GAAGTTATCAGTCGACATGAAGGGCGGCAACTACACCAGCCTCGGCACGT
GCAGTGGCATCAATGTCAGTGGCAACGTGGCCGGCACCCGCAAGATGTCA
CTGGGCAAATCCATTAAAATGTACCTGACCATTTTCATCCTGACCACCTG
CATTTATATGGCGCTCTATCAGTACCACATATCCCGTGAACCCTTCGCCG
CCAGCGAGGTTGTCAAGCCGCCCCTGTACATAATCACGCCCACCTACCGA
CGACCCGAGCAGCTGGCGGAGCTCACCCGGCTGGGATATACGCTGAAACA
TGTGGTGAATCTACTCTGGCTGGTCATCGAGGATGCCAACAAGACGAATC
CGCTGGTGGGCCACACTTTGGACCGCATCGGAGTGCCCTACGAGTACATG
GTGGCGCCCATGCCGGAGAAGTACAAGCAGACGAAGAAGGCCAAGCCGCG
TGGCGTCTCCAATCGGAATCGGGGCCTCGAGTATCTGCGCGAGCATGCCA
CCGAGGGAGTGCTCTACTTTGCCGACGACGACAACACCTACGACATTAGC
ATATTCGAGCAGATGCGCTACATCAGCAAGGTGGCCATGTGGCCAGTGGG
CCTGGTCACAAAGACCGGAGTGAGCAGTCCCATTATTCAGGCGGGCAAGC
TGGTTGGCTACTACGATGGCTGGATCGGAGGACGCAAGTATCCAGTGGAC
ATGGCTGGATTTGCAGTGAGCGTCAAGTTCTTGAAGGAGCGTCCCAATGC
CCAGATGCCCTTCAAGCCGGGATACGAGGAGGATGGGTTTCTCCGCAGTT
TGGCACCACTTGACGATGC

BS17707.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6207-PC 951 GlcAT-P-RC 1..803 17..819 4015 100 Plus
CG6207-PB 951 GlcAT-P-RB 1..803 17..819 4015 100 Plus
CG6207-PA 1440 GlcAT-P-RA 691..1292 218..819 3010 100 Plus
CG6207-PA 1440 GlcAT-P-RA 1..202 17..218 1010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-P-RE 3161 CG6207-RE 747..1549 17..819 4015 100 Plus
GlcAT-P-RB 3427 CG6207-RB 1013..1815 17..819 4015 100 Plus
GlcAT-P-RC 3266 CG6207-RC 852..1654 17..819 4015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11178682..11178941 819..560 1300 100 Minus
3L 28110227 3L 11183634..11183834 217..17 1005 100 Minus
3L 28110227 3L 11179530..11179718 404..216 945 100 Minus
3L 28110227 3L 11179224..11179382 562..404 795 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:45:03 has no hits.

BS17707.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:22:51 Download gff for BS17707.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6207-PB 1..803 17..819 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:30 Download gff for BS17707.5prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RC 852..1654 17..819 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:08 Download gff for BS17707.5prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RC 852..1654 17..819 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:08 Download gff for BS17707.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11179530..11179716 218..404 100 <- Minus
3L 11183634..11183834 17..217 100   Minus
3L 11178682..11178938 563..819 100 <- Minus
3L 11179224..11179381 405..562 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:30 Download gff for BS17707.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11171782..11172038 563..819 100 <- Minus
arm_3L 11172324..11172481 405..562 100 <- Minus
arm_3L 11172630..11172816 218..404 100 <- Minus
arm_3L 11176734..11176934 17..217 100   Minus

BS17707.pep Sequence

Translation from 16 to 966

> BS17707.pep
MKGGNYTSLGTCSGINVSGNVAGTRKMSLGKSIKMYLTIFILTTCIYMAL
YQYHISREPFAASEVVKPPLYIITPTYRRPEQLAELTRLGYTLKHVVNLL
WLVIEDANKTNPLVGHTLDRIGVPYEYMVAPMPEKYKQTKKAKPRGVSNR
NRGLEYLREHATEGVLYFADDDNTYDISIFEQMRYISKVAMWPVGLVTKT
GVSSPIIQAGKLVGYYDGWIGGRKYPVDMAGFAVSVKFLKERPNAQMPFK
PGYEEDGFLRSLAPLDDAEIELLADECRDILTWHTQTKKNAPAQALNRTR
YKNTNLEHIDRLLVRP*

BS17707.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-P-PE 316 CG6207-PE 1..316 1..316 1665 100 Plus
GlcAT-P-PB 316 CG6207-PB 1..316 1..316 1665 100 Plus
GlcAT-P-PC 316 CG6207-PC 1..316 1..316 1665 100 Plus
GlcAT-P-PD 479 CG6207-PD 176..479 7..316 1325 84.5 Plus
GlcAT-P-PA 479 CG6207-PA 176..479 7..316 1325 84.5 Plus
GlcAT-P-PD 479 CG6207-PD 1..67 1..67 344 100 Plus