Clone Sequence Records
BS17707.complete Sequence
983 bp assembled on 2010-02-09
GenBank Submission: KX801151
> BS17707.complete
GAAGTTATCAGTCGACATGAAGGGCGGCAACTACACCAGCCTCGGCACGT
GCAGTGGCATCAATGTCAGTGGCAACGTGGCCGGCACCCGCAAGATGTCA
CTGGGCAAATCCATTAAAATGTACCTGACCATTTTCATCCTGACCACCTG
CATTTATATGGCGCTCTATCAGTACCACATATCCCGTGAACCCTTCGCCG
CCAGCGAGGTTGTCAAGCCGCCCCTGTACATAATCACGCCCACCTACCGA
CGACCCGAGCAGCTGGCGGAGCTCACCCGGCTGGGATATACGCTGAAACA
TGTGGTGAATCTACTCTGGCTGGTCATCGAGGATGCCAACAAGACGAATC
CGCTGGTGGGCCACACTTTGGACCGCATCGGAGTGCCCTACGAGTACATG
GTGGCGCCCATGCCGGAGAAGTACAAGCAGACGAAGAAGGCCAAGCCGCG
TGGCGTCTCCAATCGGAATCGGGGCCTCGAGTATCTGCGCGAGCATGCCA
CCGAGGGAGTGCTCTACTTTGCCGACGACGACAACACCTACGACATTAGC
ATATTCGAGCAGATGCGCTACATCAGCAAGGTGGCCATGTGGCCAGTGGG
CCTGGTCACAAAGACCGGAGTGAGCAGTCCCATTATTCAGGCGGGCAAGC
TGGTTGGCTACTACGATGGCTGGATCGGAGGACGCAAGTATCCAGTGGAC
ATGGCTGGATTTGCAGTGAGCGTCAAGTTCTTGAAGGAGCGTCCCAATGC
CCAGATGCCCTTCAAGCCGGGATACGAGGAGGATGGGTTTCTCCGCAGTT
TGGCACCACTTGACGATGCGGAAATCGAGTTGCTGGCGGACGAGTGCAGA
GATATTCTCACGTGGCACACGCAGACGAAGAAGAACGCACCCGCTCAGGC
GCTGAACAGGACGCGCTACAAGAACACGAACCTGGAGCACATAGATAGGC
TACTGGTGCGGCCATAGAAGCTTTCTAGACCAT
BS17707.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-P-RE | 951 | CG6207-PE | 1..951 | 17..967 | 4755 | 100 | Plus |
GlcAT-P-RB | 951 | CG6207-PB | 1..951 | 17..967 | 4755 | 100 | Plus |
GlcAT-P-RC | 951 | CG6207-PC | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-P-RE | 3161 | CG6207-RE | 747..1697 | 17..967 | 4755 | 100 | Plus |
GlcAT-P-RB | 3427 | CG6207-RB | 1013..1963 | 17..967 | 4755 | 100 | Plus |
GlcAT-P-RC | 3266 | CG6207-RC | 852..1802 | 17..967 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11178648..11178941 | 853..560 | 1470 | 100 | Minus |
3L | 28110227 | 3L | 11183634..11183834 | 217..17 | 1005 | 100 | Minus |
3L | 28110227 | 3L | 11179530..11179718 | 404..216 | 945 | 100 | Minus |
3L | 28110227 | 3L | 11179224..11179382 | 562..404 | 795 | 100 | Minus |
3L | 28110227 | 3L | 11178418..11178531 | 967..854 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:07:34 has no hits.
BS17707.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:57 Download gff for
BS17707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RB | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:18 Download gff for
BS17707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RB | 980..1930 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:58 Download gff for
BS17707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RC | 852..1802 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:58 Download gff for
BS17707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RB | 980..1930 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:25 Download gff for
BS17707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RC | 852..1802 | 17..967 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:25 Download gff for
BS17707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11179224..11179381 | 405..562 | 100 | <- | Minus |
3L | 11179530..11179716 | 218..404 | 100 | <- | Minus |
3L | 11183634..11183834 | 17..217 | 100 | | Minus |
3L | 11178418..11178531 | 854..967 | 100 | <- | Minus |
3L | 11178648..11178938 | 563..853 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:58 Download gff for
BS17707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11171518..11171631 | 854..967 | 100 | <- | Minus |
arm_3L | 11171748..11172038 | 563..853 | 100 | <- | Minus |
arm_3L | 11172324..11172481 | 405..562 | 100 | <- | Minus |
arm_3L | 11172630..11172816 | 218..404 | 100 | <- | Minus |
arm_3L | 11176734..11176934 | 17..217 | 100 | | Minus |
BS17707.3prime Sequence
878 bp (778 high quality bases) assembled on 2007-05-29
> BS17707.3prime
ATGGTCTAGAAAGCTTCTATGGCCGCACCAGTAGCCTATCTATGTGCTCC
AGGTTCGTGTTCTTGTAGCGCGTCCTGTTCAGCGCCTGAGCGGGTGCGTT
CTTCTTCGTCTGCGTGTGCCACGTGAGAATATCTCTGCACTCGTCCGCCA
GCAACTCGATTTCCGCATCGTCAAGTGGTGCCAAACTGCGGAGAAACCCA
TCCTCCTCGTATCCCGGCTTGAAGGGCATCTGGGCATTGGGACGCTCCTT
CAAGAACTTGACGCTCACTGCAAATCCAGCCATGTCCACTGGATACTTGC
GTCCTCCGATCCAGCCATCGTAGTAGCCAACCAGCTTGCCCGCCTGAATA
ATGGGACTGCTCACTCCGGTCTTTGTGACCAGGCCCACTGGCCACATGGC
CACCTTGCTGATGTAGCGCATCTGCTCGAATATGCTAATGTCGTAGGTGT
TGTCGTCGTCGGCAAAGTAGAGCACTCCCTCGGTGGCATGCTCGCGCAGA
TACTCGAGGCCCCGATTCCGATTGGAGACGCCACGCGGCTTGGCCTTCTT
CGTCTGCTTGTACTTCTCCGGCATGGGCGCCACCATGTACTCGTAGGGCA
CTCCGATGCGGTCCAAAGTGTGGCCCACCAGCGGATTCGTCTTGTTGGCA
TCCTCGATGACCAGCCAGAGTAGATTCACCACATGTTTCAGCGTATATCC
CAGCCGGGTGAGCTCCGCCAGCTGCTCGGGTCGTCGGTAGGTGGGCGTGA
TTATGTACAGGGGCGGCTTGACAACCTCGCTGGCGGCGAAAGGTTCACGG
GATATGTGGTACTGATAGAGCGCCATATAAATGCAGGTGGTCAAGATGAA
AATGGTCAGGTACATTTTTATGGATTTG
BS17707.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6207-PC | 951 | GlcAT-P-RC | 90..951 | 878..17 | 4235 | 99.6 | Minus |
CG6207-PB | 951 | GlcAT-P-RB | 90..951 | 878..17 | 4235 | 99.6 | Minus |
CG6207-PA | 1440 | GlcAT-P-RA | 691..1440 | 766..17 | 3750 | 100 | Minus |
CG6207-PA | 1440 | GlcAT-P-RA | 90..202 | 878..766 | 490 | 97.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-P-RE | 3161 | CG6207-RE | 836..1697 | 878..17 | 4265 | 99.7 | Minus |
GlcAT-P-RB | 3427 | CG6207-RB | 1102..1963 | 878..17 | 4265 | 99.7 | Minus |
GlcAT-P-RC | 3266 | CG6207-RC | 941..1802 | 878..17 | 4265 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11178648..11178941 | 131..424 | 1470 | 100 | Plus |
3L | 28110227 | 3L | 11179530..11179718 | 580..768 | 945 | 100 | Plus |
3L | 28110227 | 3L | 11179224..11179382 | 422..580 | 795 | 100 | Plus |
3L | 28110227 | 3L | 11178418..11178531 | 17..130 | 570 | 100 | Plus |
3L | 28110227 | 3L | 11183634..11183745 | 767..878 | 515 | 97.3 | Plus |
Blast to na_te.dros performed 2015-02-11 16:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 4183..4211 | 842..870 | 109 | 86.2 | Plus |
BS17707.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:22:46 Download gff for
BS17707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6207-PB | 90..951 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:02 Download gff for
BS17707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RC | 941..1802 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:54 Download gff for
BS17707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RC | 941..1802 | 17..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:54 Download gff for
BS17707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11178418..11178531 | 17..130 | 100 | <- | Plus |
3L | 11178648..11178938 | 131..421 | 100 | <- | Plus |
3L | 11179224..11179381 | 422..579 | 100 | <- | Plus |
3L | 11179530..11179716 | 580..766 | 100 | <- | Plus |
3L | 11183634..11183745 | 767..878 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:02 Download gff for
BS17707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11171518..11171631 | 17..130 | 100 | <- | Plus |
arm_3L | 11171748..11172038 | 131..421 | 100 | <- | Plus |
arm_3L | 11172324..11172481 | 422..579 | 100 | <- | Plus |
arm_3L | 11172630..11172816 | 580..766 | 100 | <- | Plus |
arm_3L | 11176734..11176845 | 767..878 | 97 | | Plus |
BS17707.5prime Sequence
819 bp (733 high quality bases) assembled on 2007-05-29
> BS17707.5prime
GAAGTTATCAGTCGACATGAAGGGCGGCAACTACACCAGCCTCGGCACGT
GCAGTGGCATCAATGTCAGTGGCAACGTGGCCGGCACCCGCAAGATGTCA
CTGGGCAAATCCATTAAAATGTACCTGACCATTTTCATCCTGACCACCTG
CATTTATATGGCGCTCTATCAGTACCACATATCCCGTGAACCCTTCGCCG
CCAGCGAGGTTGTCAAGCCGCCCCTGTACATAATCACGCCCACCTACCGA
CGACCCGAGCAGCTGGCGGAGCTCACCCGGCTGGGATATACGCTGAAACA
TGTGGTGAATCTACTCTGGCTGGTCATCGAGGATGCCAACAAGACGAATC
CGCTGGTGGGCCACACTTTGGACCGCATCGGAGTGCCCTACGAGTACATG
GTGGCGCCCATGCCGGAGAAGTACAAGCAGACGAAGAAGGCCAAGCCGCG
TGGCGTCTCCAATCGGAATCGGGGCCTCGAGTATCTGCGCGAGCATGCCA
CCGAGGGAGTGCTCTACTTTGCCGACGACGACAACACCTACGACATTAGC
ATATTCGAGCAGATGCGCTACATCAGCAAGGTGGCCATGTGGCCAGTGGG
CCTGGTCACAAAGACCGGAGTGAGCAGTCCCATTATTCAGGCGGGCAAGC
TGGTTGGCTACTACGATGGCTGGATCGGAGGACGCAAGTATCCAGTGGAC
ATGGCTGGATTTGCAGTGAGCGTCAAGTTCTTGAAGGAGCGTCCCAATGC
CCAGATGCCCTTCAAGCCGGGATACGAGGAGGATGGGTTTCTCCGCAGTT
TGGCACCACTTGACGATGC
BS17707.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6207-PC | 951 | GlcAT-P-RC | 1..803 | 17..819 | 4015 | 100 | Plus |
CG6207-PB | 951 | GlcAT-P-RB | 1..803 | 17..819 | 4015 | 100 | Plus |
CG6207-PA | 1440 | GlcAT-P-RA | 691..1292 | 218..819 | 3010 | 100 | Plus |
CG6207-PA | 1440 | GlcAT-P-RA | 1..202 | 17..218 | 1010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-P-RE | 3161 | CG6207-RE | 747..1549 | 17..819 | 4015 | 100 | Plus |
GlcAT-P-RB | 3427 | CG6207-RB | 1013..1815 | 17..819 | 4015 | 100 | Plus |
GlcAT-P-RC | 3266 | CG6207-RC | 852..1654 | 17..819 | 4015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11178682..11178941 | 819..560 | 1300 | 100 | Minus |
3L | 28110227 | 3L | 11183634..11183834 | 217..17 | 1005 | 100 | Minus |
3L | 28110227 | 3L | 11179530..11179718 | 404..216 | 945 | 100 | Minus |
3L | 28110227 | 3L | 11179224..11179382 | 562..404 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:45:03 has no hits.
BS17707.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:22:51 Download gff for
BS17707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6207-PB | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:30 Download gff for
BS17707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RC | 852..1654 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:08 Download gff for
BS17707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RC | 852..1654 | 17..819 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:08 Download gff for
BS17707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11179530..11179716 | 218..404 | 100 | <- | Minus |
3L | 11183634..11183834 | 17..217 | 100 | | Minus |
3L | 11178682..11178938 | 563..819 | 100 | <- | Minus |
3L | 11179224..11179381 | 405..562 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:30 Download gff for
BS17707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11171782..11172038 | 563..819 | 100 | <- | Minus |
arm_3L | 11172324..11172481 | 405..562 | 100 | <- | Minus |
arm_3L | 11172630..11172816 | 218..404 | 100 | <- | Minus |
arm_3L | 11176734..11176934 | 17..217 | 100 | | Minus |
BS17707.pep Sequence
Translation from 16 to 966
> BS17707.pep
MKGGNYTSLGTCSGINVSGNVAGTRKMSLGKSIKMYLTIFILTTCIYMAL
YQYHISREPFAASEVVKPPLYIITPTYRRPEQLAELTRLGYTLKHVVNLL
WLVIEDANKTNPLVGHTLDRIGVPYEYMVAPMPEKYKQTKKAKPRGVSNR
NRGLEYLREHATEGVLYFADDDNTYDISIFEQMRYISKVAMWPVGLVTKT
GVSSPIIQAGKLVGYYDGWIGGRKYPVDMAGFAVSVKFLKERPNAQMPFK
PGYEEDGFLRSLAPLDDAEIELLADECRDILTWHTQTKKNAPAQALNRTR
YKNTNLEHIDRLLVRP*
BS17707.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-P-PE | 316 | CG6207-PE | 1..316 | 1..316 | 1665 | 100 | Plus |
GlcAT-P-PB | 316 | CG6207-PB | 1..316 | 1..316 | 1665 | 100 | Plus |
GlcAT-P-PC | 316 | CG6207-PC | 1..316 | 1..316 | 1665 | 100 | Plus |
GlcAT-P-PD | 479 | CG6207-PD | 176..479 | 7..316 | 1325 | 84.5 | Plus |
GlcAT-P-PA | 479 | CG6207-PA | 176..479 | 7..316 | 1325 | 84.5 | Plus |
GlcAT-P-PD | 479 | CG6207-PD | 1..67 | 1..67 | 344 | 100 | Plus |