Clone Sequence Records
BS17712.complete Sequence
2165 bp assembled on 2009-12-07
GenBank Submission: KX806004
> BS17712.complete
GAAGTTATCAGTCGACATGAGCGGCGCTCGGGATCAGACGGATCCCCCGC
TGCTCCAGCTCGAGGACGAGGTGGATCTCATCGGGGACTTTGCCAAGGAC
CAACCTCCGCCCAGAAACCAACTGTCTCCGCTTTTAAATGGCTTCGAGTC
GACAAGCAACCAGTTGACCACCAAAGTTGAGATCAACACCGTCGGCATGG
GCAAACGCAAGACAAGGAGAAGAGGGAAAAAGGCGCGGGAACCCATGCTA
CTGTCGGTGGACGACGAGGATGACGAGGAAGAGGCGCAAGAGGAGAGGAA
CCACACCAACGGGCTGCCGCCAGGCGAGGAGAGTGCCGGCGGCGATGCTG
TTATTCAGAAACCGCAACTGGATAACTTGGTCATGCATTACGACGACCAG
ATCGACGACGAAGATGGCGAAGAAGCTGTGCTGCTGAAGAGAAGCTCAAA
CCCGCGCAACCAAAGACTCAAAGGTAGCGCTGAGGATAGCATCGACAGCA
GCAGCCAACAGCCACCGATTATTTGTCACATCGCACCCGCGAAGGTAGCC
TCATCTGCATTGACATCTCCGCTGAAAACCACTTCGCACACTGCTCTCGC
CCGTCATCCGCATGACGAGGCCGACGACATCTGCCTGGTGCCAGAAATCG
ACTTCGAGGGCATGTCCACGGACGCCGGCAGCGACAACCGGGAGTCACAG
CCGCTCTTGGGGGGAGGCAATGCCAGTCACGGAAGTCGCATCAGCGAGCT
TTTGGGCGGACTAGGACGCGGGCACGATCATGTGGAGTTTGTATCGAACA
CATTTGGCGATGACCCGCTTTTCTCGGAGATCGTGGCGAAGGCGGAGGGG
GCCATCGAGAATGGTGTGCTGCCCGAGCGCATTTACCAGGGTAGCAGTGG
TTCCTACTTTGTCAAGGATGCCTCCCATCAATGCCTGGCCGTATTTAAGC
CAAAGGACGAGGAACCCTATGGCAGACTGAATCCGAAGTGGACGAAATGG
ATGCATAAGCTGTGCTGCCCGTGTTGTTTTGGCCGAGCTTGCTTGATTCC
CAATCAGGGGTACCTCTCCGAATCAGGAGCCAGCTTGGTTGATCGAAAAC
TCAATCTGAATGTGGTTCCAAAGACGCGAGTGGTCAGATTGGTTGCCGAG
AGCTTTAACTACGCACGCATTGATCGACAGAAGGCCAAGCTGAAGAAGCG
CATTAAAGAGCACTATCCGTCGGCTCACTTCAACCGAATGAGCCTTCCTC
TAAAGACTGGCTCCTTTCAGCTCTTCGTGGAGGGTTACAAGGATGCGGAC
TATTGGCTGCGGCGCTTTGAAAGCGAACCCTTGCCGCCTTCAGTGGCGAA
GTCGTTCCAACTGCAGTTCGAGCGCCTCGTCGTGCTCGATTATATCATAC
GCAACACGGACCGTGGCAACGACAACTGGCTGATCAAGTACGTGGCCCCT
AAGATCACGACCCAGGTGGGAGGCACTGGCGGCAGAACTATGCACGGAGT
TGTGACCCCCAAATTGCCCAATGCGTTGGGGGCTTCAAAAATCGTTGACC
TAAACGAGCCGCCGCAGGCTAGCCCGAAACCGACTACTGGTGGTCGCCCT
TCGAACCACCTAGCGGGTGGAGCAGCCACAAGTGCACAGCAAGATAGCAG
CAGTTTGGCCAGCAGCGAAGATGAACCCTCGTCGAGATCCCCCCCTACGT
CGGAACCCGATTGGAATGTGGTGAACTCGGCCTTCATTCGGATCGCTGCC
ATCGACAATGGTCTCGCTTTTCCCTTCAAGCATCCGGACTCTTGGCGAGC
TTATCCCTACCATTGGGCCTGGTTGCCACAGGCGAAAATTCCGTTTAGCG
AAGAAATCAAGGAGCAGGTGCTGCCGCAGTTGTCAGATATGAACTTTGTA
GAGGAGATCTGCACGGAGTTGTTGTACCTCTTCCAGCAGGATCGCGGCTT
TGACAAGCGTCTCTTCGAGCGCCAGATGTCGGTGATGCGGGGCCAGATTC
TAAATCTCACACAGGCACTGAGGGATGGCAAGTCGCCGGTGCAACTGGTC
CAGATGCCAGCGGTGATTGTCGAGCGATCAAGTGGCAGTCGTTTCTTCTC
TTTTACGCAGCGCTTCCAAAATAAGAGCCCTTTCTTCTCTTGGTGCTAAA
AGCTTTCTAGACCAT
BS17712.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RC | 2133 | CG2929-PC | 1..2133 | 17..2149 | 10665 | 100 | Plus |
| Pi4KIIalpha-RA | 2133 | CG2929-PA | 1..2133 | 17..2149 | 10665 | 100 | Plus |
| Pi4KIIalpha-RB | 1692 | CG2929-PB | 353..1692 | 810..2149 | 6700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RC | 3095 | CG2929-RC | 326..2461 | 15..2150 | 10680 | 100 | Plus |
| Pi4KIIalpha-RA | 3122 | CG2929-RA | 353..2488 | 15..2150 | 10680 | 100 | Plus |
| Pi4KIIalpha-RB | 2565 | CG2929-RB | 591..1931 | 810..2150 | 6705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5558499..5559321 | 2076..1254 | 4115 | 100 | Minus |
| 3R | 32079331 | 3R | 5562263..5562896 | 813..180 | 3155 | 99.8 | Minus |
| 3R | 32079331 | 3R | 5559379..5559575 | 1255..1059 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 5562965..5563131 | 181..15 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 5559669..5559802 | 1062..929 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 5560075..5560194 | 928..809 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 5558367..5558436 | 2145..2076 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:42:12 has no hits.
BS17712.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:39 Download gff for
BS17712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RC | 1..2133 | 17..2149 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:37 Download gff for
BS17712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RC | 301..2431 | 17..2147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:11 Download gff for
BS17712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RA | 355..2485 | 17..2147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:24 Download gff for
BS17712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RC | 301..2431 | 17..2147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:52 Download gff for
BS17712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RA | 355..2485 | 17..2147 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:52 Download gff for
BS17712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5560075..5560193 | 810..928 | 100 | <- | Minus |
| 3R | 5558365..5558435 | 2077..2147 | 98 | <- | Minus |
| 3R | 5558499..5559319 | 1256..2076 | 100 | <- | Minus |
| 3R | 5559379..5559574 | 1060..1255 | 100 | <- | Minus |
| 3R | 5559672..5559802 | 929..1059 | 100 | <- | Minus |
| 3R | 5562267..5562894 | 182..809 | 100 | <- | Minus |
| 3R | 5562965..5563129 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:11 Download gff for
BS17712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1384087..1384157 | 2077..2147 | 98 | <- | Minus |
| arm_3R | 1384221..1385041 | 1256..2076 | 100 | <- | Minus |
| arm_3R | 1385101..1385296 | 1060..1255 | 100 | <- | Minus |
| arm_3R | 1385394..1385524 | 929..1059 | 100 | <- | Minus |
| arm_3R | 1385797..1385915 | 810..928 | 100 | <- | Minus |
| arm_3R | 1387989..1388616 | 182..809 | 100 | <- | Minus |
| arm_3R | 1388687..1388851 | 17..181 | 100 | | Minus |
BS17712.3prime Sequence
848 bp (769 high quality bases) assembled on 2007-05-29
> BS17712.3prime
ATGGTCTAGAAAGCTTTTAGCACCAAGAGAAGAAAGGGCTCTTATTTTGG
AAGCGCTGCGTAAAAGAGAAGAAACGACTGCCACTTGATCGCTCGACAAT
CACCGCTGGCATCTGGACCAGTTGCACCGGCGACTTGCCATCCCTCAGTG
CCTGTGTGAGATTTAGAATCTGGCCCCGCATCACCGACATCTGGCGCTCG
AAGAGACGCTTGTCAAAGCCGCGATCCTGCTGGAAGAGGTACAACAACTC
CGTGCAGATCTCCTCTACAAAGTTCATATCTGACAACTGCGGCAGCACCT
GCTCCTTGATTTCTTCGCTAAACGGAATTTTCGCCTGTGGCAACCAGGCC
CAATGGTAGGGATAAGCTCGCCAAGAGTCCGGATGCTTGAAGGGAAAAGC
GAGACCATTGTCGATGGCAGCGATCCGAATGAAGGCCGAGTTCACCACAT
TCCAATCGGGTTCCGACGTAGGGGGGGATCTCGACGAGGGTTCATCTTCG
CTGCTGGCCAAACTGCTGCTATCTTGCTGTGCACTTGTGGCTGCTCCACC
CGCTAGGTGGTTCGAAGGGCGACCACCAGTAGTCGGTTTCGGGCTAGCCT
GCGGCGGCTCGTTTAGGTCAACGATTTTTGAAGCCCCCAACGCATTGGGC
AATTTGGGGGTCACAACTCCGTGCATAGTTCTGCCGCCAGTGCCTCCCAC
CTGGGTCGTGATCTTAGGGGCCACGTACTTGATCAGCCAGTTGTCGTTGC
CACGGTCCGTGTTGCGTATGATATAATCGAGCACGACGAGGCGCTCGAAC
TGCAGTTGGAACGACTTCGCCACTGAAGGCGGCAAGGGTTCGCTTTCA
BS17712.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2929-PB | 1692 | Pi4KIIalpha-RB | 861..1692 | 848..17 | 4160 | 100 | Minus |
| CG2929-PA | 2133 | Pi4KIIalpha-RA | 1302..2133 | 848..17 | 4160 | 100 | Minus |
| CG2929-PC | 2133 | Pi4KIIalpha-RC | 1302..2133 | 848..17 | 4160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RC | 3095 | CG2929-RC | 1629..2461 | 848..16 | 4165 | 100 | Minus |
| Pi4KIIalpha-RA | 3122 | CG2929-RA | 1656..2488 | 848..16 | 4165 | 100 | Minus |
| Pi4KIIalpha-RB | 2565 | CG2929-RB | 1099..1931 | 848..16 | 4165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5558499..5559257 | 90..848 | 3795 | 100 | Plus |
| 3R | 32079331 | 3R | 5558367..5558436 | 21..90 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:43:12 has no hits.
BS17712.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:18 Download gff for
BS17712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2929-PC | 1303..2133 | 17..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:41 Download gff for
BS17712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 1100..1931 | 16..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:16:10 Download gff for
BS17712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 1100..1931 | 16..847 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:16:10 Download gff for
BS17712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5558364..5558435 | 18..89 | 98 | <- | Plus |
| 3R | 5558499..5559256 | 90..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:41 Download gff for
BS17712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1384086..1384157 | 18..89 | 98 | <- | Plus |
| arm_3R | 1384221..1384978 | 90..847 | 100 | | Plus |
BS17712.5prime Sequence
896 bp (811 high quality bases) assembled on 2007-05-29
> BS17712.5prime
GAAGTTATCAGTCGACATGAGCGGCGCTCGGGATCAGACGGATCCCCCGC
TGCTCCAGCTCGAGGACGAGGTGGATCTCATCGGGGACTTTGCCAAGGAC
CAACCTCCGCCCAGAAACCAACTGTCTCCGCTTTTAAATGGCTTCGAGTC
GACAAGCAACCAGTTGACCACCAAAGTTGAGATCAACACCGTCGGCATGG
GCAAACGCAAGACAAGGAGAAGAGGGAAAAAGGCGCGGGAACCCATGCTA
CTGTCGGTGGACGACGAGGATGACGAGGAAGAGGCGCAAGAGGAGAGGAA
CCACACCAACGGGCTGCCGCCAGGCGAGGAGAGTGCCGGCGGCGATGCTG
TTATTCAGAAACCGCAACTGGATAACTTGGTCATGCATTACGACGACCAG
ATCGACGACGAAGATGGCGAAGAAGCTGTGCTGCTGAAGAGAAGCTCAAA
CCCGCGCAACCAAAGACTCAAAGGTAGCGCTGAGGATAGCATCGACAGCA
GCAGCCAACAGCCACCGATTATTTGTCACATCGCACCCGCGAAGGTAGCC
TCATCTGCATTGACATCTCCGCTGAAAACCACTTCGCACACTGCTCTCGC
CCGTCATCCGCATGACGAGGCCGACGACATCTGCCTGGTGCCAGAAATCG
ACTTCGAGGGCATGTCCACGGACGCCGGCAGCGACAACCGGGAGTCACAG
CCGCTCTTGGGGGGAGGCAATGCCAGTCACGGAAGTCGCATCAGCGAGCT
TTTGGGCGGACTANGACGCGGGCACGATCATGTGGAGTTTGTATCGAACA
CATTTGGCGATGACCCCGCTTTCTCGGAGATCGTGGCGAAGGCGGGAGGG
GGCATCGAGAATGGTGTGCTGCCCGAGCGCATTTACCAGGGTAGCA
BS17712.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2929-PA | 2133 | Pi4KIIalpha-RA | 1..800 | 17..816 | 3981 | 99.8 | Plus |
| CG2929-PC | 2133 | Pi4KIIalpha-RC | 1..800 | 17..816 | 3981 | 99.8 | Plus |
| CG2929-PA | 2133 | Pi4KIIalpha-RA | 804..880 | 820..896 | 310 | 96.1 | Plus |
| CG2929-PC | 2133 | Pi4KIIalpha-RC | 804..880 | 820..896 | 310 | 96.1 | Plus |
| CG2929-PB | 1692 | Pi4KIIalpha-RB | 363..439 | 820..896 | 310 | 96.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RC | 3095 | CG2929-RC | 326..1207 | 15..896 | 4309 | 99.4 | Plus |
| Pi4KIIalpha-RA | 3122 | CG2929-RA | 353..1234 | 15..896 | 4309 | 99.4 | Plus |
| Pi4KIIalpha-RB | 2565 | CG2929-RB | 595..677 | 815..896 | 345 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5562263..5562896 | 813..180 | 3144 | 99.7 | Minus |
| 3R | 32079331 | 3R | 5562965..5563131 | 181..15 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 5560107..5560194 | 896..809 | 350 | 93.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:45:26 has no hits.
BS17712.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:24 Download gff for
BS17712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2929-PC | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:32 Download gff for
BS17712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RA | 344..1233 | 8..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:12 Download gff for
BS17712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RA | 344..1233 | 8..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:12 Download gff for
BS17712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5560108..5560193 | 810..895 | 95 | <- | Minus |
| 3R | 5562965..5563140 | 8..181 | 98 | | Minus |
| 3R | 5562267..5562894 | 182..809 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:32 Download gff for
BS17712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1385830..1385915 | 810..895 | 95 | <- | Minus |
| arm_3R | 1387989..1388616 | 182..809 | 99 | <- | Minus |
| arm_3R | 1388687..1388862 | 8..181 | 98 | | Minus |
BS17712.pep Sequence
Translation from 16 to 2148
> BS17712.pep
MSGARDQTDPPLLQLEDEVDLIGDFAKDQPPPRNQLSPLLNGFESTSNQL
TTKVEINTVGMGKRKTRRRGKKAREPMLLSVDDEDDEEEAQEERNHTNGL
PPGEESAGGDAVIQKPQLDNLVMHYDDQIDDEDGEEAVLLKRSSNPRNQR
LKGSAEDSIDSSSQQPPIICHIAPAKVASSALTSPLKTTSHTALARHPHD
EADDICLVPEIDFEGMSTDAGSDNRESQPLLGGGNASHGSRISELLGGLG
RGHDHVEFVSNTFGDDPLFSEIVAKAEGAIENGVLPERIYQGSSGSYFVK
DASHQCLAVFKPKDEEPYGRLNPKWTKWMHKLCCPCCFGRACLIPNQGYL
SESGASLVDRKLNLNVVPKTRVVRLVAESFNYARIDRQKAKLKKRIKEHY
PSAHFNRMSLPLKTGSFQLFVEGYKDADYWLRRFESEPLPPSVAKSFQLQ
FERLVVLDYIIRNTDRGNDNWLIKYVAPKITTQVGGTGGRTMHGVVTPKL
PNALGASKIVDLNEPPQASPKPTTGGRPSNHLAGGAATSAQQDSSSLASS
EDEPSSRSPPTSEPDWNVVNSAFIRIAAIDNGLAFPFKHPDSWRAYPYHW
AWLPQAKIPFSEEIKEQVLPQLSDMNFVEEICTELLYLFQQDRGFDKRLF
ERQMSVMRGQILNLTQALRDGKSPVQLVQMPAVIVERSSGSRFFSFTQRF
QNKSPFFSWC*
BS17712.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-PC | 710 | CG2929-PC | 1..710 | 1..710 | 3740 | 100 | Plus |
| Pi4KIIalpha-PA | 710 | CG2929-PA | 1..710 | 1..710 | 3740 | 100 | Plus |
| Pi4KIIalpha-PB | 563 | CG2929-PB | 119..563 | 266..710 | 2363 | 100 | Plus |
