Clone BS17713 Report

Search the DGRC for BS17713

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:177
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG12304-RB
Protein status:BS17713.pep: full length peptide match
Sequenced Size:938

Clone Sequence Records

BS17713.complete Sequence

938 bp assembled on 2010-02-09

GenBank Submission: KX804825

> BS17713.complete
GAAGTTATCAGTCGACATGTACGAACTGAAGACTCTGCTGCCGCAATTCG
ACATAAAGCTGCCCACCTGCATGTATCCTCTCAAGAACGTTAGCCTGGCG
GCGGATTCCTTGGCCAGCGGCTCCTCCACATCCGCATCCACATCCGCGTC
CACATCATCATGCGACGATACGGCATCAGTGGCCGCCCGACAGGAGAAGG
TTCTCAAGCAGCTGGAGGAGCTGAAGGCGCAGCTGGGACAAATCCGGGCG
GGACTTGGTGTTTGTGGCAAGACTTTCCAGCACACGACTGCTTTCCAGAA
TGGTGGATTAAAGGAGGTGCCACTGCAGGATGTCGTCATCAATGGACATC
CCAACTTCATACCCTATGCCTTGTTGGCCCTGAAAAATGCCTGGCGCAAT
CTGTACACTATTGATGTCAAGACCTTTACGCACTCTACGATGGCCGACAT
TGGACCAGCAGCACGGGAATTCGAGGCCAACTTGGCGAAGGTTCCAGTAA
ACCCTGCTTTGCCCAAGATTAGTGTGACGCTCATCTGGAAGAACTGCGAA
CACACCGAGATGATCAGCTCGCCCACCATGTACGTGCCCATCTACGGAGA
GGTGAACATCATTCGCTATCTGGGCCGTGTGGGTCCAGCCGAGTATCGTT
ATGAGGGCTCTCCGCTCTGCAATGAGATCGACCTTGTCCTGGACATTTGC
TACCAACTGCTGCGCTGCAACACGCACAAAACGCAGGTGGCCATGGTGCG
CCTGCTGGACAAGCGACTGCAGAAGCAGCAGTATTTCGGTGGATCCCAGA
TGTCGGTGGCGGATGTCGGTGTCTACAGCTCACTGATACGCATGCCAGCT
GTTACCGAGAAGGATCTGACGCCTGCGCTAGTGGCTTGGAGAAAAAGGGC
CAAGCTCGTGGTTCAAATTTAAAAGCTTTCTAGACCAT

BS17713.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12304-RB 906 CG12304-PB 1..906 17..922 4530 100 Plus
CG12304-RA 1005 CG12304-PA 247..1005 164..922 3795 100 Plus
CG12304-RA 1005 CG12304-PA 1..147 17..163 735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12304-RB 1051 CG12304-RB 98..1004 17..923 4535 100 Plus
CG12304-RA 1150 CG12304-RA 344..1103 164..923 3800 100 Plus
CG12304-RA 1150 CG12304-RA 98..244 17..163 735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15584923..15585300 546..923 1890 100 Plus
3L 28110227 3L 15584638..15584869 315..546 1160 100 Plus
3L 28110227 3L 15584287..15584441 164..318 775 100 Plus
3L 28110227 3L 15583735..15583882 17..164 740 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:07:47 has no hits.

BS17713.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:01 Download gff for BS17713.complete
Subject Subject Range Query Range Percent Splice Strand
CG12304-RB 1..906 17..922 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:23 Download gff for BS17713.complete
Subject Subject Range Query Range Percent Splice Strand
CG12304-RB 93..996 17..920 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:05 Download gff for BS17713.complete
Subject Subject Range Query Range Percent Splice Strand
CG12304-RB 98..1001 17..920 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:01 Download gff for BS17713.complete
Subject Subject Range Query Range Percent Splice Strand
CG12304-RB 93..1004 17..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:30 Download gff for BS17713.complete
Subject Subject Range Query Range Percent Splice Strand
CG12304-RB 98..1001 17..920 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:30 Download gff for BS17713.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15583735..15583881 17..163 100 -> Plus
3L 15584287..15584439 164..316 100 -> Plus
3L 15584640..15584868 317..545 100 -> Plus
3L 15584923..15585297 546..920 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:05 Download gff for BS17713.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15576835..15576981 17..163 100 -> Plus
arm_3L 15577387..15577539 164..316 100 -> Plus
arm_3L 15577740..15577968 317..545 100 -> Plus
arm_3L 15578023..15578397 546..920 100   Plus

BS17713.3prime Sequence

869 bp (813 high quality bases) assembled on 2007-05-29

> BS17713.3prime
ATGGTCTAGAAAGCTTTTAAATTTGAACCACGAGCTTGGCCCTTTTTCTC
CAAGCCACTAGCGCAGGCGTCAGATCCTTCTCGGTAACAGCTGGCATGCG
TATCAGTGAGCTGTAGACACCGACATCCGCCACCGACATCTGGGATCCAC
CGAAATACTGCTGCTTCTGCAGTCGCTTGTCCAGCAGGCGCACCATGGCC
ACCTGCGTTTTGTGCGTGTTGCAGCGCAGCAGTTGGTAGCAAATGTCCAG
GACAAGGTCGATCTCATTGCAGAGCGGAGAGCCCTCATAACGATACTCGG
CTGGACCCACACGGCCCAGATAGCGAATGATGTTCACCTCTCCGTAGATG
GGCACGTACATGGTGGGCGAGCTGATCATCTCGGTGTGTTCGCAGTTCTT
CCAGATGAGCGTCACACTAATCTTGGGCAAAGCAGGGTTTACTGGAACCT
TCGCCAAGTTGGCCTCGAATTCCCGTGCTGCTGGTCCAATGTCGGCCATC
GTAGAGTGCGTAAAGGTCTTGACATCAATAGTGTACAGATTGCGCCAGGC
ATTTTTCAGGGCCAACAAGGCATAGGGTATGAAGTTGGGATGTCCATTGA
TGACGACATCCTGCAGTGGCACCTCCTTTAATCCACCATTCTGGAAAGCA
GTCGTGTGCTGGAAAGTCTTGCCACAAACACCAAGTCCCGCCCGGATTTG
TCCCAGCTGCGCCTTCAGCTCCTCCAGCTGCTTGAGAACCTTCTCCTGTC
GGGCGGCCACTGATGCCGTATCGTCGCATGATGATGTGGACGCGGATGTG
GATGCGGATGTGGAGGAGCCGCTGGCCAAAGGATCCGCCGCCAGGCTAAC
GTTCTTGAGAGGATACATG

BS17713.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12304-PB 906 CG12304-RB 54..906 869..17 4215 99.7 Minus
CG12304-PA 1005 CG12304-RA 247..1005 775..17 3795 100 Minus
CG12304-PA 1005 CG12304-RA 54..147 869..776 420 97.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12304-RB 1051 CG12304-RB 151..1004 869..16 4240 99.8 Minus
CG12304-RA 1150 CG12304-RA 344..1103 775..16 3800 100 Minus
CG12304-RA 1150 CG12304-RA 151..244 869..776 440 97.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15584923..15585300 393..16 1890 100 Minus
3L 28110227 3L 15584638..15584869 624..393 1160 100 Minus
3L 28110227 3L 15584287..15584441 775..621 775 100 Minus
3L 28110227 3L 15583788..15583882 869..775 445 97.9 Minus
Blast to na_te.dros performed on 2015-02-12 16:33:59 has no hits.

BS17713.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:29 Download gff for BS17713.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12304-PB 54..906 17..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:19:54 Download gff for BS17713.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12304-RB 151..1009 11..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:10 Download gff for BS17713.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12304-RB 151..1009 11..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:10 Download gff for BS17713.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15583788..15583881 776..869 97 -> Minus
3L 15584287..15584439 623..775 100 -> Minus
3L 15584640..15584868 394..622 100 -> Minus
3L 15584923..15585305 11..393 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:19:54 Download gff for BS17713.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15576888..15576981 776..869 97 -> Minus
arm_3L 15577387..15577539 623..775 100 -> Minus
arm_3L 15577740..15577968 394..622 100 -> Minus
arm_3L 15578023..15578405 11..393 99   Minus

BS17713.5prime Sequence

853 bp (757 high quality bases) assembled on 2007-05-29

> BS17713.5prime
GAAGTTATCAGTCGACATGTACGAACTGAAGACTCTGCTGCCGCAATTCG
ACATAAAGCTGCCCACCTGCATGTATCCTCTCAAGAACGTTAGCCTGGCG
GCGGATTCCTTGGCCAGCGGCTCCTCCACATCCGCATCCACATCCGCGTC
CACATCATCATGCGACGATACGGCATCAGTGGCCGCCCGACAGGAGAAGG
TTCTCAAGCAGCTGGAGGAGCTGAAGGCGCAGCTGGGACAAATCCGGGCG
GGACTTGGTGTTTGTGGCAAGACTTTCCAGCACACGACTGCTTTCCAGAA
TGGTGGATTAAAGGAGGTGCCACTGCAGGATGTCGTCATCAATGGACATC
CCAACTTCATACCCTATGCCTTGTTGGCCCTGAAAAATGCCTGGCGCAAT
CTGTACACTATTGATGTCAAGACCTTTACGCACTCTACGATGGCCGACAT
TGGACCAGCAGCACGGGAATTCGAGGCCAACTTGGCGAAGGTTCCAGTAA
ACCCTGCTTTGCCCAAGATTAGTGTGACGCTCATCTGGAAGAACTGCGAA
CACACCGAGATGATCAGCTCGCCCACCATGTACGTGCCCATCTACGGAGA
GGTGAACATCATTCGCTATCTGGGCCGTGTGGGTCCAGCCGAGTATCGTT
ATGAGGGCTCTCCGCTCTGCAATGAGATCGACCTTGTCCTGGACATTTGC
TACCAACTGCTGCGCTGCAACACGCACAAAACGCAGGTGGCCATGGTGCG
CCTGCTGGACAAGCGACTGCAGAAGCAGCAGTATTTCGGTGGATCCCAGA
TGTCGGTGGCGGATGTCGGTGTCTACAGCTCACTGATACCCATGCCAGCT
GTT

BS17713.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12304-PB 906 CG12304-RB 1..837 17..853 4160 99.8 Plus
CG12304-PA 1005 CG12304-RA 247..936 164..853 3425 99.8 Plus
CG12304-PA 1005 CG12304-RA 1..147 17..163 735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12304-RB 1051 CG12304-RB 98..934 17..853 4170 99.9 Plus
CG12304-RA 1150 CG12304-RA 344..1033 164..853 3435 99.9 Plus
CG12304-RA 1150 CG12304-RA 98..244 17..163 735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15584923..15585230 546..853 1525 99.7 Plus
3L 28110227 3L 15584638..15584869 315..546 1160 100 Plus
3L 28110227 3L 15584287..15584441 164..318 775 100 Plus
3L 28110227 3L 15583735..15583882 17..164 740 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:58:34 has no hits.

BS17713.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:35 Download gff for BS17713.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12304-PB 1..837 17..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:05 Download gff for BS17713.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12304-RB 98..934 17..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:17 Download gff for BS17713.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12304-RB 98..934 17..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:17 Download gff for BS17713.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15583730..15583881 13..163 98 -> Plus
3L 15584287..15584439 164..316 100 -> Plus
3L 15584640..15584868 317..545 100 -> Plus
3L 15584923..15585230 546..853 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:05 Download gff for BS17713.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15576830..15576981 13..163 98 -> Plus
arm_3L 15577387..15577539 164..316 100 -> Plus
arm_3L 15577740..15577968 317..545 100 -> Plus
arm_3L 15578023..15578330 546..853 99   Plus

BS17713.pep Sequence

Translation from 16 to 921

> BS17713.pep
MYELKTLLPQFDIKLPTCMYPLKNVSLAADSLASGSSTSASTSASTSSCD
DTASVAARQEKVLKQLEELKAQLGQIRAGLGVCGKTFQHTTAFQNGGLKE
VPLQDVVINGHPNFIPYALLALKNAWRNLYTIDVKTFTHSTMADIGPAAR
EFEANLAKVPVNPALPKISVTLIWKNCEHTEMISSPTMYVPIYGEVNIIR
YLGRVGPAEYRYEGSPLCNEIDLVLDICYQLLRCNTHKTQVAMVRLLDKR
LQKQQYFGGSQMSVADVGVYSSLIRMPAVTEKDLTPALVAWRKRAKLVVQ
I*

BS17713.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12304-PB 301 CG12304-PB 1..301 1..301 1547 100 Plus
CG12304-PA 334 CG12304-PA 1..334 1..301 1503 90.1 Plus