Clone Sequence Records
BS17713.complete Sequence
938 bp assembled on 2010-02-09
GenBank Submission: KX804825
> BS17713.complete
GAAGTTATCAGTCGACATGTACGAACTGAAGACTCTGCTGCCGCAATTCG
ACATAAAGCTGCCCACCTGCATGTATCCTCTCAAGAACGTTAGCCTGGCG
GCGGATTCCTTGGCCAGCGGCTCCTCCACATCCGCATCCACATCCGCGTC
CACATCATCATGCGACGATACGGCATCAGTGGCCGCCCGACAGGAGAAGG
TTCTCAAGCAGCTGGAGGAGCTGAAGGCGCAGCTGGGACAAATCCGGGCG
GGACTTGGTGTTTGTGGCAAGACTTTCCAGCACACGACTGCTTTCCAGAA
TGGTGGATTAAAGGAGGTGCCACTGCAGGATGTCGTCATCAATGGACATC
CCAACTTCATACCCTATGCCTTGTTGGCCCTGAAAAATGCCTGGCGCAAT
CTGTACACTATTGATGTCAAGACCTTTACGCACTCTACGATGGCCGACAT
TGGACCAGCAGCACGGGAATTCGAGGCCAACTTGGCGAAGGTTCCAGTAA
ACCCTGCTTTGCCCAAGATTAGTGTGACGCTCATCTGGAAGAACTGCGAA
CACACCGAGATGATCAGCTCGCCCACCATGTACGTGCCCATCTACGGAGA
GGTGAACATCATTCGCTATCTGGGCCGTGTGGGTCCAGCCGAGTATCGTT
ATGAGGGCTCTCCGCTCTGCAATGAGATCGACCTTGTCCTGGACATTTGC
TACCAACTGCTGCGCTGCAACACGCACAAAACGCAGGTGGCCATGGTGCG
CCTGCTGGACAAGCGACTGCAGAAGCAGCAGTATTTCGGTGGATCCCAGA
TGTCGGTGGCGGATGTCGGTGTCTACAGCTCACTGATACGCATGCCAGCT
GTTACCGAGAAGGATCTGACGCCTGCGCTAGTGGCTTGGAGAAAAAGGGC
CAAGCTCGTGGTTCAAATTTAAAAGCTTTCTAGACCAT
BS17713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12304-RB | 906 | CG12304-PB | 1..906 | 17..922 | 4530 | 100 | Plus |
CG12304-RA | 1005 | CG12304-PA | 247..1005 | 164..922 | 3795 | 100 | Plus |
CG12304-RA | 1005 | CG12304-PA | 1..147 | 17..163 | 735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12304-RB | 1051 | CG12304-RB | 98..1004 | 17..923 | 4535 | 100 | Plus |
CG12304-RA | 1150 | CG12304-RA | 344..1103 | 164..923 | 3800 | 100 | Plus |
CG12304-RA | 1150 | CG12304-RA | 98..244 | 17..163 | 735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15584923..15585300 | 546..923 | 1890 | 100 | Plus |
3L | 28110227 | 3L | 15584638..15584869 | 315..546 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 15584287..15584441 | 164..318 | 775 | 100 | Plus |
3L | 28110227 | 3L | 15583735..15583882 | 17..164 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:07:47 has no hits.
BS17713.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:01 Download gff for
BS17713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-RB | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:23 Download gff for
BS17713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-RB | 93..996 | 17..920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:05 Download gff for
BS17713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-RB | 98..1001 | 17..920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:01 Download gff for
BS17713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-RB | 93..1004 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:30 Download gff for
BS17713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-RB | 98..1001 | 17..920 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:30 Download gff for
BS17713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15583735..15583881 | 17..163 | 100 | -> | Plus |
3L | 15584287..15584439 | 164..316 | 100 | -> | Plus |
3L | 15584640..15584868 | 317..545 | 100 | -> | Plus |
3L | 15584923..15585297 | 546..920 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:05 Download gff for
BS17713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15576835..15576981 | 17..163 | 100 | -> | Plus |
arm_3L | 15577387..15577539 | 164..316 | 100 | -> | Plus |
arm_3L | 15577740..15577968 | 317..545 | 100 | -> | Plus |
arm_3L | 15578023..15578397 | 546..920 | 100 | | Plus |
BS17713.3prime Sequence
869 bp (813 high quality bases) assembled on 2007-05-29
> BS17713.3prime
ATGGTCTAGAAAGCTTTTAAATTTGAACCACGAGCTTGGCCCTTTTTCTC
CAAGCCACTAGCGCAGGCGTCAGATCCTTCTCGGTAACAGCTGGCATGCG
TATCAGTGAGCTGTAGACACCGACATCCGCCACCGACATCTGGGATCCAC
CGAAATACTGCTGCTTCTGCAGTCGCTTGTCCAGCAGGCGCACCATGGCC
ACCTGCGTTTTGTGCGTGTTGCAGCGCAGCAGTTGGTAGCAAATGTCCAG
GACAAGGTCGATCTCATTGCAGAGCGGAGAGCCCTCATAACGATACTCGG
CTGGACCCACACGGCCCAGATAGCGAATGATGTTCACCTCTCCGTAGATG
GGCACGTACATGGTGGGCGAGCTGATCATCTCGGTGTGTTCGCAGTTCTT
CCAGATGAGCGTCACACTAATCTTGGGCAAAGCAGGGTTTACTGGAACCT
TCGCCAAGTTGGCCTCGAATTCCCGTGCTGCTGGTCCAATGTCGGCCATC
GTAGAGTGCGTAAAGGTCTTGACATCAATAGTGTACAGATTGCGCCAGGC
ATTTTTCAGGGCCAACAAGGCATAGGGTATGAAGTTGGGATGTCCATTGA
TGACGACATCCTGCAGTGGCACCTCCTTTAATCCACCATTCTGGAAAGCA
GTCGTGTGCTGGAAAGTCTTGCCACAAACACCAAGTCCCGCCCGGATTTG
TCCCAGCTGCGCCTTCAGCTCCTCCAGCTGCTTGAGAACCTTCTCCTGTC
GGGCGGCCACTGATGCCGTATCGTCGCATGATGATGTGGACGCGGATGTG
GATGCGGATGTGGAGGAGCCGCTGGCCAAAGGATCCGCCGCCAGGCTAAC
GTTCTTGAGAGGATACATG
BS17713.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12304-PB | 906 | CG12304-RB | 54..906 | 869..17 | 4215 | 99.7 | Minus |
CG12304-PA | 1005 | CG12304-RA | 247..1005 | 775..17 | 3795 | 100 | Minus |
CG12304-PA | 1005 | CG12304-RA | 54..147 | 869..776 | 420 | 97.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12304-RB | 1051 | CG12304-RB | 151..1004 | 869..16 | 4240 | 99.8 | Minus |
CG12304-RA | 1150 | CG12304-RA | 344..1103 | 775..16 | 3800 | 100 | Minus |
CG12304-RA | 1150 | CG12304-RA | 151..244 | 869..776 | 440 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15584923..15585300 | 393..16 | 1890 | 100 | Minus |
3L | 28110227 | 3L | 15584638..15584869 | 624..393 | 1160 | 100 | Minus |
3L | 28110227 | 3L | 15584287..15584441 | 775..621 | 775 | 100 | Minus |
3L | 28110227 | 3L | 15583788..15583882 | 869..775 | 445 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:33:59 has no hits.
BS17713.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:29 Download gff for
BS17713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-PB | 54..906 | 17..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:19:54 Download gff for
BS17713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-RB | 151..1009 | 11..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:10 Download gff for
BS17713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-RB | 151..1009 | 11..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:10 Download gff for
BS17713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15583788..15583881 | 776..869 | 97 | -> | Minus |
3L | 15584287..15584439 | 623..775 | 100 | -> | Minus |
3L | 15584640..15584868 | 394..622 | 100 | -> | Minus |
3L | 15584923..15585305 | 11..393 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:19:54 Download gff for
BS17713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15576888..15576981 | 776..869 | 97 | -> | Minus |
arm_3L | 15577387..15577539 | 623..775 | 100 | -> | Minus |
arm_3L | 15577740..15577968 | 394..622 | 100 | -> | Minus |
arm_3L | 15578023..15578405 | 11..393 | 99 | | Minus |
BS17713.5prime Sequence
853 bp (757 high quality bases) assembled on 2007-05-29
> BS17713.5prime
GAAGTTATCAGTCGACATGTACGAACTGAAGACTCTGCTGCCGCAATTCG
ACATAAAGCTGCCCACCTGCATGTATCCTCTCAAGAACGTTAGCCTGGCG
GCGGATTCCTTGGCCAGCGGCTCCTCCACATCCGCATCCACATCCGCGTC
CACATCATCATGCGACGATACGGCATCAGTGGCCGCCCGACAGGAGAAGG
TTCTCAAGCAGCTGGAGGAGCTGAAGGCGCAGCTGGGACAAATCCGGGCG
GGACTTGGTGTTTGTGGCAAGACTTTCCAGCACACGACTGCTTTCCAGAA
TGGTGGATTAAAGGAGGTGCCACTGCAGGATGTCGTCATCAATGGACATC
CCAACTTCATACCCTATGCCTTGTTGGCCCTGAAAAATGCCTGGCGCAAT
CTGTACACTATTGATGTCAAGACCTTTACGCACTCTACGATGGCCGACAT
TGGACCAGCAGCACGGGAATTCGAGGCCAACTTGGCGAAGGTTCCAGTAA
ACCCTGCTTTGCCCAAGATTAGTGTGACGCTCATCTGGAAGAACTGCGAA
CACACCGAGATGATCAGCTCGCCCACCATGTACGTGCCCATCTACGGAGA
GGTGAACATCATTCGCTATCTGGGCCGTGTGGGTCCAGCCGAGTATCGTT
ATGAGGGCTCTCCGCTCTGCAATGAGATCGACCTTGTCCTGGACATTTGC
TACCAACTGCTGCGCTGCAACACGCACAAAACGCAGGTGGCCATGGTGCG
CCTGCTGGACAAGCGACTGCAGAAGCAGCAGTATTTCGGTGGATCCCAGA
TGTCGGTGGCGGATGTCGGTGTCTACAGCTCACTGATACCCATGCCAGCT
GTT
BS17713.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12304-PB | 906 | CG12304-RB | 1..837 | 17..853 | 4160 | 99.8 | Plus |
CG12304-PA | 1005 | CG12304-RA | 247..936 | 164..853 | 3425 | 99.8 | Plus |
CG12304-PA | 1005 | CG12304-RA | 1..147 | 17..163 | 735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12304-RB | 1051 | CG12304-RB | 98..934 | 17..853 | 4170 | 99.9 | Plus |
CG12304-RA | 1150 | CG12304-RA | 344..1033 | 164..853 | 3435 | 99.9 | Plus |
CG12304-RA | 1150 | CG12304-RA | 98..244 | 17..163 | 735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15584923..15585230 | 546..853 | 1525 | 99.7 | Plus |
3L | 28110227 | 3L | 15584638..15584869 | 315..546 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 15584287..15584441 | 164..318 | 775 | 100 | Plus |
3L | 28110227 | 3L | 15583735..15583882 | 17..164 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:58:34 has no hits.
BS17713.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:35 Download gff for
BS17713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-PB | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:05 Download gff for
BS17713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-RB | 98..934 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:17 Download gff for
BS17713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-RB | 98..934 | 17..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:17 Download gff for
BS17713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15583730..15583881 | 13..163 | 98 | -> | Plus |
3L | 15584287..15584439 | 164..316 | 100 | -> | Plus |
3L | 15584640..15584868 | 317..545 | 100 | -> | Plus |
3L | 15584923..15585230 | 546..853 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:05 Download gff for
BS17713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15576830..15576981 | 13..163 | 98 | -> | Plus |
arm_3L | 15577387..15577539 | 164..316 | 100 | -> | Plus |
arm_3L | 15577740..15577968 | 317..545 | 100 | -> | Plus |
arm_3L | 15578023..15578330 | 546..853 | 99 | | Plus |
BS17713.pep Sequence
Translation from 16 to 921
> BS17713.pep
MYELKTLLPQFDIKLPTCMYPLKNVSLAADSLASGSSTSASTSASTSSCD
DTASVAARQEKVLKQLEELKAQLGQIRAGLGVCGKTFQHTTAFQNGGLKE
VPLQDVVINGHPNFIPYALLALKNAWRNLYTIDVKTFTHSTMADIGPAAR
EFEANLAKVPVNPALPKISVTLIWKNCEHTEMISSPTMYVPIYGEVNIIR
YLGRVGPAEYRYEGSPLCNEIDLVLDICYQLLRCNTHKTQVAMVRLLDKR
LQKQQYFGGSQMSVADVGVYSSLIRMPAVTEKDLTPALVAWRKRAKLVVQ
I*
BS17713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12304-PB | 301 | CG12304-PB | 1..301 | 1..301 | 1547 | 100 | Plus |
CG12304-PA | 334 | CG12304-PA | 1..334 | 1..301 | 1503 | 90.1 | Plus |