Clone Sequence Records
BS17714.complete Sequence
1466 bp assembled on 2009-12-07
GenBank Submission: KX805168
> BS17714.complete
GAAGTTATCAGTCGACATGCTATTGAAAGTAGTGAATATAAATGGCTTGC
AGCACCTGTTCGCCTGCACTGAGGGGCAGCATGATGAAACCCTAACTATT
CACGTTTTCCGTCCTCGCGAGAAGTGGACTTACTCCGAGACTTTGATGAA
ACGCGATTACCAGCAGCGTTTGAAAACGCTCAACGCGCGTGTGAAGTTTC
CCGAGGAATTGGTGCGCCAGGTCCTGCTCAACAAGGATCCATTGCATGTC
GAACAGGATTACCAGCACCCATTGAACGTCCTGAAACTGAAGTATGCCAT
GGCGAATTTCAAAGTTTTCCTCAAGTGGGAATGGCACCTGAGACCCATGG
ATGCCGCACAGTTGTATAGCCAAATGTTCTTGAACACAATGTCCACGGCT
TTGGGACTACGGGTTCAGATACCCCTTCTGCTAGGGATTATCCATGCCAA
GGACAAGGAGCTGAACCAGTATCGCACCGAGGGATGCCAGCTGCGCAAAG
TGACTGTGGAAACCAAGCCCTTTGATCTCGAGGCTTTTATGAATAAGCAC
AAGCAATTGCTGGACTGTTCCGCTGCCTACCAGAAGGCGCAGAGTACTTT
TTTTGCTGATAAGCCATCGCCTAATTGGACATCGCTTTCTTCGCCATGGG
CACGGGATGTCGCGCCCTATTCTTCGTCAAACGGCTACTTTGCTTCTTCG
AAGGCATCAAGCCCAAAAGAAGCTCCTCGCATTAGGAAGCGCAAGGCTCT
TGAAATCAATACCAATCATATGGAGCGCAAGGTAATGCAGCGCCGCTCCA
ATCCGCTTGTCGAGTACAAAAGCTCGCAGAGTTCCCAAGAGACAAACGTA
AATTTAATCTTAAAAGTAGAGCTAGCGCCAATGGACACCAAGAATGATCT
CACTGATGATGACGAAGAGTCATCCACATCTTCGGGGCTTTCCCAAGGAT
GGTCGGCCAAACTAACCAAATTTAATCCAACCGTCGGAAGTGGTGTATAT
GAACTTGCATCTCAGGAACAGTATGCTTCTTCTGAAGATGAGGATGCTTC
TTCTAAAAATGGGGATACTTCTTCTAAATATGAGGATGCTTCTTCTAAAG
ATGAGGATGCTTCTTCCAAAGATGAGAATACTTCTTCTAAAGATGAGGAT
GCTCCGTCTAAAGATGAGGATACTTCTTCTAAAGATGAGGATGCTTCTTC
TGAATATGAAGAGGTCACTAGGGAGGCATCGAACGCTTTCAATTTCGTCA
TAAAGAAGGTTGAATCTTTAAAAGAGTTTTACGATGCCCCAAGGGAACTC
ATCCAAGAACCCAAAGTCGGAAAGTCCGATCAGAATTGGGATTTAATTCT
TCGAACTGTGCTGGAAGATATCAAAGCCGTACTGATTTACTCAACTGAAC
GCATCGAAAAAGCGATCCAGAGCTATATCAATAAGTTAGCGCAAAAATAA
AAGCTTTCTAGACCAT
BS17714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-RB | 1434 | CG12728-PB | 1..1434 | 17..1450 | 7170 | 100 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
CG32756-RB | 1380 | CG32756-PB | 1..1175 | 17..1191 | 5325 | 97.2 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1010..1151 | 1068..1209 | 455 | 88 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1052..1193 | 1026..1167 | 455 | 88 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1010..1151 | 1068..1209 | 455 | 88 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1052..1193 | 1026..1167 | 455 | 88 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1007..1130 | 1086..1209 | 410 | 88.7 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1070..1193 | 1023..1146 | 410 | 88.7 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1007..1130 | 1086..1209 | 410 | 88.7 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1070..1193 | 1023..1146 | 410 | 88.7 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1007..1100 | 1107..1200 | 305 | 88.3 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1091..1184 | 1023..1116 | 305 | 88.3 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1007..1100 | 1107..1200 | 305 | 88.3 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1091..1184 | 1023..1116 | 305 | 88.3 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1010..1088 | 1131..1209 | 275 | 89.9 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1115..1193 | 1026..1104 | 275 | 89.9 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1010..1088 | 1131..1209 | 275 | 89.9 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1115..1193 | 1026..1104 | 275 | 89.9 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1007..1067 | 1149..1209 | 185 | 86.9 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1133..1193 | 1023..1083 | 185 | 86.9 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1007..1067 | 1149..1209 | 185 | 86.9 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1133..1193 | 1023..1083 | 185 | 86.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-RB | 2374 | CG12728-RB | 78..1511 | 17..1450 | 7170 | 100 | Plus |
CG12728-RA | 1746 | CG12728-RA | 78..1511 | 17..1450 | 7170 | 100 | Plus |
CG32756-RB | 2397 | CG32756-RB | 80..1254 | 17..1191 | 5325 | 97.2 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1087..1228 | 1068..1209 | 455 | 88 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1129..1270 | 1026..1167 | 455 | 88 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1087..1228 | 1068..1209 | 455 | 88 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1129..1270 | 1026..1167 | 455 | 88 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1084..1207 | 1086..1209 | 410 | 88.7 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1147..1270 | 1023..1146 | 410 | 88.7 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1084..1207 | 1086..1209 | 410 | 88.7 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1147..1270 | 1023..1146 | 410 | 88.7 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1084..1177 | 1107..1200 | 305 | 88.3 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1168..1261 | 1023..1116 | 305 | 88.3 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1084..1177 | 1107..1200 | 305 | 88.3 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1168..1261 | 1023..1116 | 305 | 88.3 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1087..1165 | 1131..1209 | 275 | 89.9 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1192..1270 | 1026..1104 | 275 | 89.9 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1087..1165 | 1131..1209 | 275 | 89.9 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1192..1270 | 1026..1104 | 275 | 89.9 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1084..1144 | 1149..1209 | 185 | 86.9 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1210..1270 | 1023..1083 | 185 | 86.9 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1084..1144 | 1149..1209 | 185 | 86.9 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1210..1270 | 1023..1083 | 185 | 86.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5943671..5944387 | 734..1450 | 3585 | 100 | Plus |
X | 23542271 | X | 5946753..5947210 | 734..1191 | 1815 | 93.9 | Plus |
X | 23542271 | X | 5943375..5943612 | 499..736 | 1190 | 100 | Plus |
X | 23542271 | X | 5946457..5946694 | 499..736 | 1145 | 98.7 | Plus |
X | 23542271 | X | 5945981..5946166 | 176..361 | 930 | 100 | Plus |
X | 23542271 | X | 5942903..5943088 | 176..361 | 930 | 100 | Plus |
X | 23542271 | X | 5942683..5942841 | 17..175 | 795 | 100 | Plus |
X | 23542271 | X | 5945761..5945919 | 17..175 | 795 | 100 | Plus |
X | 23542271 | X | 5943153..5943293 | 360..500 | 705 | 100 | Plus |
X | 23542271 | X | 5946231..5946368 | 360..497 | 675 | 99.3 | Plus |
X | 23542271 | X | 5943963..5944104 | 1068..1209 | 455 | 88 | Plus |
X | 23542271 | X | 5944005..5944146 | 1026..1167 | 455 | 88 | Plus |
X | 23542271 | X | 5947045..5947157 | 1086..1198 | 415 | 91.2 | Plus |
X | 23542271 | X | 5943960..5944083 | 1086..1209 | 410 | 88.7 | Plus |
X | 23542271 | X | 5944023..5944146 | 1023..1146 | 410 | 88.7 | Plus |
X | 23542271 | X | 5947048..5947394 | 1068..1417 | 390 | 75 | Plus |
X | 23542271 | X | 5947085..5947210 | 1021..1149 | 325 | 85.3 | Plus |
X | 23542271 | X | 5947045..5947147 | 1107..1209 | 320 | 87.4 | Plus |
X | 23542271 | X | 5943960..5944053 | 1107..1200 | 305 | 88.3 | Plus |
X | 23542271 | X | 5944044..5944137 | 1023..1116 | 305 | 88.3 | Plus |
X | 23542271 | X | 5947048..5947126 | 1131..1209 | 275 | 89.9 | Plus |
X | 23542271 | X | 5943963..5944041 | 1131..1209 | 275 | 89.9 | Plus |
X | 23542271 | X | 5944068..5944146 | 1026..1104 | 275 | 89.9 | Plus |
X | 23542271 | X | 5943960..5944020 | 1149..1209 | 185 | 86.9 | Plus |
X | 23542271 | X | 5944086..5944146 | 1023..1083 | 185 | 86.9 | Plus |
X | 23542271 | X | 5947045..5947105 | 1149..1209 | 185 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:45:47 has no hits.
BS17714.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:02 Download gff for
BS17714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 1..1434 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:20 Download gff for
BS17714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 76..1501 | 17..1442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:02 Download gff for
BS17714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 78..1503 | 17..1442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:02 Download gff for
BS17714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 71..1509 | 12..1450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:14 Download gff for
BS17714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 78..1503 | 17..1442 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:14 Download gff for
BS17714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5942683..5942841 | 17..175 | 100 | -> | Plus |
X | 5942903..5943088 | 176..361 | 100 | -> | Plus |
X | 5943155..5943293 | 362..500 | 100 | -> | Plus |
X | 5943377..5943611 | 501..735 | 100 | -> | Plus |
X | 5943673..5944379 | 736..1442 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:02 Download gff for
BS17714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5836936..5837121 | 176..361 | 100 | -> | Plus |
arm_X | 5837188..5837326 | 362..500 | 100 | -> | Plus |
arm_X | 5837410..5837644 | 501..735 | 100 | -> | Plus |
arm_X | 5836716..5836874 | 17..175 | 100 | -> | Plus |
arm_X | 5837706..5838412 | 736..1442 | 100 | | Plus |
BS17714.3prime Sequence
886 bp (797 high quality bases) assembled on 2007-05-29
> BS17714.3prime
ATGGTCTAGAAAGCTTTTATTTTTGCGCTAACTTATTGATATAGCTCTGG
ATCGCTTTTTCGATGCGTTCAGTTGAGTAAATCAGTACGGCTTTGATATC
TTCCAGCACAGTTCGAAGAATTAAATCCCAATTCTGATCGGACTTTCCGA
CTTTGGGTTCTTGGATGAGTTCCCTTGGGGCATCGTAAAACTCTTTTAAA
GATTCAACCTTCTTTATGACGAAATTGAAAGCGTTCGATGCCTCCCTAGT
GACCTCTTCATATTCAGAAGAAGCATCCTCATCTTTAGAAGAAGTATCCT
CATCTTTAGACGGAGCATCCTCATCTTTAGAAGAAGTATTCTCATCTTTG
GAAGAAGCATCCTCATCTTTAGAAGAAGCATCCTCATATTTAGAAGAAGT
ATCCCCATTTTTAGAAGAAGCATCCTCATCTTCAGAAGAAGCATACTGTT
CCTGAGATGCAAGTTCATATACACCACTTCCGACGGTTGGATTAAATTTG
GTTAGTTTGGCCGACCATCCTTGGGAAAGCCCCGAAGATGTGGATGACTC
TTCGTCATCATCAGTGAGATCATTCTTGGTGTCCATTGGCGCTAGCTCTA
CTTTTAAGATTAAATTTACGTTTGTCTCTTGGGAACTCTGCGAGCTTTTG
TACTCGACAAGCGGATTGGAGCGGCGCTGCATTACCTTGCGCTCCATATG
ATTGGTATTGATTTCAAGAGCCTTGCGCTTCCTAATGCGAGGAGCTTCTT
TTGGGCTTGATGCCTTCGAAGAAGCAAAGTAGCCGTTTGACGAAGAATAG
GGCGCGACATCCCGTGCCCATGGCGAAGAAAGCGATGTCCAATTAGGCGA
TGGCTTATCAGCAAAAAAAGTACTTCTGCGCCTTCT
BS17714.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-PA | 1434 | CG12728-RA | 577..1434 | 874..17 | 4290 | 100 | Minus |
CG32756-PA | 1380 | CG32756-RA | 577..938 | 874..513 | 1785 | 99.7 | Minus |
CG32756-PA | 1380 | CG32756-RA | 947..1112 | 507..342 | 705 | 96.9 | Minus |
CG32756-PA | 1380 | CG32756-RA | 1010..1118 | 381..273 | 320 | 91.7 | Minus |
CG32756-PA | 1380 | CG32756-RA | 1013..1112 | 399..300 | 225 | 89 | Minus |
CG32756-PA | 1380 | CG32756-RA | 1010..1118 | 423..315 | 220 | 88 | Minus |
CG32756-PA | 1380 | CG32756-RA | 1031..1118 | 444..357 | 215 | 89.7 | Minus |
CG32756-PA | 1380 | CG32756-RA | 1013..1083 | 336..266 | 205 | 91.5 | Minus |
CG32756-PA | 1380 | CG32756-RA | 1120..1202 | 310..228 | 190 | 89.1 | Minus |
CG32756-PA | 1380 | CG32756-RA | 1060..1104 | 310..266 | 175 | 95.5 | Minus |
CG32756-PA | 1380 | CG32756-RA | 1302..1339 | 107..70 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-RB | 2374 | CG12728-RB | 643..1511 | 886..17 | 4325 | 99.9 | Minus |
CG12728-RA | 1746 | CG12728-RA | 643..1511 | 886..17 | 4325 | 99.9 | Minus |
CG32756-RB | 2397 | CG32756-RB | 645..1438 | 886..50 | 2655 | 88.7 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1087..1228 | 399..258 | 455 | 88 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1129..1270 | 441..300 | 455 | 88 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1087..1228 | 399..258 | 455 | 88 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1129..1270 | 441..300 | 455 | 88 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1084..1207 | 381..258 | 410 | 88.7 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1147..1270 | 444..321 | 410 | 88.7 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1147..1270 | 444..321 | 410 | 88.7 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1084..1207 | 381..258 | 410 | 88.7 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1084..1177 | 360..267 | 305 | 88.3 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1168..1261 | 444..351 | 305 | 88.3 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1084..1177 | 360..267 | 305 | 88.3 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1168..1261 | 444..351 | 305 | 88.3 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1087..1165 | 336..258 | 275 | 89.9 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1192..1270 | 441..363 | 275 | 89.9 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1087..1165 | 336..258 | 275 | 89.9 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1192..1270 | 441..363 | 275 | 89.9 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1084..1144 | 318..258 | 185 | 86.9 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1210..1270 | 444..384 | 185 | 86.9 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1084..1144 | 318..258 | 185 | 86.9 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1210..1270 | 444..384 | 185 | 86.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5943671..5944387 | 733..17 | 3585 | 100 | Minus |
X | 23542271 | X | 5946753..5947210 | 733..276 | 1815 | 93.9 | Minus |
X | 23542271 | X | 5943458..5943612 | 886..731 | 730 | 99.4 | Minus |
X | 23542271 | X | 5946540..5946694 | 886..731 | 730 | 99.4 | Minus |
X | 23542271 | X | 5943963..5944104 | 399..258 | 455 | 88 | Minus |
X | 23542271 | X | 5944005..5944146 | 441..300 | 455 | 88 | Minus |
X | 23542271 | X | 5947045..5947157 | 381..269 | 415 | 91.2 | Minus |
X | 23542271 | X | 5943960..5944083 | 381..258 | 410 | 88.7 | Minus |
X | 23542271 | X | 5944023..5944146 | 444..321 | 410 | 88.7 | Minus |
X | 23542271 | X | 5947048..5947394 | 399..50 | 390 | 75 | Minus |
X | 23542271 | X | 5947085..5947210 | 446..318 | 325 | 85.3 | Minus |
X | 23542271 | X | 5947045..5947147 | 360..258 | 320 | 87.4 | Minus |
X | 23542271 | X | 5943960..5944053 | 360..267 | 305 | 88.3 | Minus |
X | 23542271 | X | 5944044..5944137 | 444..351 | 305 | 88.3 | Minus |
X | 23542271 | X | 5943963..5944041 | 336..258 | 275 | 89.9 | Minus |
X | 23542271 | X | 5944068..5944146 | 441..363 | 275 | 89.9 | Minus |
X | 23542271 | X | 5947048..5947126 | 336..258 | 275 | 89.9 | Minus |
X | 23542271 | X | 5943960..5944020 | 318..258 | 185 | 86.9 | Minus |
X | 23542271 | X | 5944086..5944146 | 444..384 | 185 | 86.9 | Minus |
X | 23542271 | X | 5947045..5947105 | 318..258 | 185 | 86.9 | Minus |
Blast to na_te.dros performed 2015-02-12 23:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader1 | 4032 | invader1 INVADER 4032bp | 409..437 | 543..571 | 109 | 86.2 | Plus |
BS17714.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:40 Download gff for
BS17714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-PA | 566..1434 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:35 Download gff for
BS17714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 643..1514 | 10..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:14 Download gff for
BS17714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 643..1514 | 10..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:14 Download gff for
BS17714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5943458..5943611 | 732..886 | 99 | -> | Minus |
X | 5943673..5944390 | 10..731 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:35 Download gff for
BS17714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5837491..5837644 | 732..886 | 99 | -> | Minus |
arm_X | 5837706..5838423 | 10..731 | 99 | | Minus |
BS17714.5prime Sequence
827 bp (753 high quality bases) assembled on 2007-05-29
> BS17714.5prime
GAAGTTATCAGTCGACATGCTATTGAAAGTAGTGAATATAAATGGCTTGC
AGCACCTGTTCGCCTGCACTGAGGGGCAGCATGATGAAACCCTAACTATT
CACGTTTTCCGTCCTCGCGAGAAGTGGACTTACTCCGAGACTTTGATGAA
ACGCGATTACCAGCAGCGTTTGAAAACGCTCAACGCGCGTGTGAAGTTTC
CCGAGGAATTGGTGCGCCAGGTCCTGCTCAACAAGGATCCATTGCATGTC
GAACAGGATTACCAGCACCCATTGAACGTCCTGAAACTGAAGTATGCCAT
GGCGAATTTCAAAGTTTTCCTCAAGTGGGAATGGCACCTGAGACCCATGG
ATGCCGCACAGTTGTATAGCCAAATGTTCTTGAACACAATGTCCACGGCT
TTGGGACTACGGGTTCAGATACCCCTTCTGCTAGGGATTATCCATGCCAA
GGACAAGGAGCTGAACCAGTATCGCACCGAGGGATGCCAGCTGCGCAAAG
TGACTGTGGAAACCAAGCCCTTTGATCTCGAGGCTTTTATGAATAAGCAC
AAGCAATTGCTGGACTGTTCCGCTGCCTACCAGAAGGCGCAGAGTACTTT
TTTTGCTGATAAGCCATCGCCTAATTGGACATCGCTTTCTTCGCCATGGG
CACGGGATGTCGCGCCCTATTCTTCGTCAAACGGCTACTTTGCTTCTTCG
AAGGCATCAAGCCCAAAAGAAGCTCCTCGCATTANGAAGCGCAAGGCTCT
TGAAATCAATACCAATCATATGGAGCGCAAGGTAATGCAGCGCCGCTCCA
ATCCGCTTGTCGAGTACAAAAGCTCGC
BS17714.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-PA | 1434 | CG12728-RA | 1..811 | 17..827 | 4036 | 99.8 | Plus |
CG32756-PA | 1380 | CG32756-RA | 1..811 | 17..827 | 3911 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-RB | 2374 | CG12728-RB | 78..888 | 17..827 | 4044 | 99.9 | Plus |
CG12728-RA | 1746 | CG12728-RA | 78..888 | 17..827 | 4044 | 99.9 | Plus |
CG32756-RB | 2397 | CG32756-RB | 80..890 | 17..827 | 3969 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5943375..5943610 | 499..734 | 1180 | 100 | Plus |
X | 23542271 | X | 5946457..5946692 | 499..734 | 1135 | 98.7 | Plus |
X | 23542271 | X | 5942903..5943088 | 176..361 | 930 | 100 | Plus |
X | 23542271 | X | 5945981..5946166 | 176..361 | 930 | 100 | Plus |
X | 23542271 | X | 5942683..5942841 | 17..175 | 795 | 100 | Plus |
X | 23542271 | X | 5945761..5945919 | 17..175 | 795 | 100 | Plus |
X | 23542271 | X | 5943153..5943293 | 360..500 | 705 | 100 | Plus |
X | 23542271 | X | 5946231..5946368 | 360..497 | 675 | 99.3 | Plus |
X | 23542271 | X | 5943673..5943764 | 736..827 | 460 | 100 | Plus |
X | 23542271 | X | 5946755..5946846 | 736..827 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:43:20 has no hits.
BS17714.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:23:45 Download gff for
BS17714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-PA | 1..811 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:44 Download gff for
BS17714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 73..888 | 12..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:16:40 Download gff for
BS17714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 73..888 | 12..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:16:40 Download gff for
BS17714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5942678..5942841 | 12..175 | 98 | -> | Plus |
X | 5942903..5943088 | 176..361 | 100 | -> | Plus |
X | 5943155..5943293 | 362..500 | 100 | -> | Plus |
X | 5943377..5943611 | 501..735 | 99 | -> | Plus |
X | 5943673..5943764 | 736..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:44 Download gff for
BS17714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5836711..5836874 | 12..175 | 98 | -> | Plus |
arm_X | 5836936..5837121 | 176..361 | 100 | -> | Plus |
arm_X | 5837188..5837326 | 362..500 | 100 | -> | Plus |
arm_X | 5837410..5837644 | 501..735 | 99 | -> | Plus |
arm_X | 5837706..5837797 | 736..827 | 100 | | Plus |
BS17714.pep Sequence
Translation from 16 to 1449
> BS17714.pep
MLLKVVNINGLQHLFACTEGQHDETLTIHVFRPREKWTYSETLMKRDYQQ
RLKTLNARVKFPEELVRQVLLNKDPLHVEQDYQHPLNVLKLKYAMANFKV
FLKWEWHLRPMDAAQLYSQMFLNTMSTALGLRVQIPLLLGIIHAKDKELN
QYRTEGCQLRKVTVETKPFDLEAFMNKHKQLLDCSAAYQKAQSTFFADKP
SPNWTSLSSPWARDVAPYSSSNGYFASSKASSPKEAPRIRKRKALEINTN
HMERKVMQRRSNPLVEYKSSQSSQETNVNLILKVELAPMDTKNDLTDDDE
ESSTSSGLSQGWSAKLTKFNPTVGSGVYELASQEQYASSEDEDASSKNGD
TSSKYEDASSKDEDASSKDENTSSKDEDAPSKDEDTSSKDEDASSEYEEV
TREASNAFNFVIKKVESLKEFYDAPRELIQEPKVGKSDQNWDLILRTVLE
DIKAVLIYSTERIEKAIQSYINKLAQK*
BS17714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-PB | 477 | CG12728-PB | 1..477 | 1..477 | 2449 | 100 | Plus |
CG12728-PA | 477 | CG12728-PA | 1..477 | 1..477 | 2449 | 100 | Plus |
CG32756-PB | 459 | CG32756-PB | 1..459 | 1..473 | 2037 | 85.7 | Plus |
CG32756-PA | 459 | CG32756-PA | 1..459 | 1..473 | 2037 | 85.7 | Plus |
CG14692-PE | 2851 | CG14692-PE | 1136..1386 | 182..442 | 164 | 26.3 | Plus |