Clone Sequence Records
BS17720.complete Sequence
800 bp assembled on 2010-02-09
GenBank Submission: KX802679
> BS17720.complete
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGACAAGGGCATCCTGCCGGACTCGATGGGTC
GTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGTCCATCGTTCGCAT
CGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGCTAATGAACCACCT
GACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTCCTGCACACGCTGA
CCACCAATCAACCTGCCATATTTTTCTACGAGAAGAGAAGATTTACGCTT
CACTCATTCCTGCCCTACTACTACAATATACGGGGCAAGGGCAAGGACGG
ATTCACCTATGTGAACTACATTAACGGCGGCCATCCACCCTGGACTTTAT
TAGATCACATCAAGCACTACGCGTCGATGGTGCGCCACACCAGCAGCCTT
TGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGCGGTGGTTCTACCA
CAAGCTGCTCACTCGCTTCAACTTTATCGAGTGAAAGCTTTCTAGACCAT
BS17720.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RB | 768 | CG18177-PB | 1..768 | 17..784 | 3840 | 100 | Plus |
Naa60-RC | 720 | CG18177-PC | 1..640 | 17..656 | 3185 | 99.8 | Plus |
Naa60-RA | 831 | CG18177-PA | 365..831 | 318..784 | 2335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RB | 2231 | CG18177-RB | 659..1427 | 17..785 | 3845 | 100 | Plus |
Naa60-RC | 1378 | CG18177-RC | 659..1298 | 17..656 | 3185 | 99.8 | Plus |
Naa60-RA | 2294 | CG18177-RA | 1023..1490 | 318..785 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9728211..9728433 | 318..540 | 1115 | 100 | Plus |
3L | 28110227 | 3L | 9727983..9728150 | 153..320 | 840 | 100 | Plus |
3L | 28110227 | 3L | 9728713..9728846 | 652..785 | 670 | 100 | Plus |
3L | 28110227 | 3L | 9727787..9727909 | 34..156 | 615 | 100 | Plus |
3L | 28110227 | 3L | 9728502..9728619 | 539..656 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:07:52 has no hits.
BS17720.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:03 Download gff for
BS17720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-RB | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:25 Download gff for
BS17720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-RB | 624..1390 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:07 Download gff for
BS17720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RB | 659..1425 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:03 Download gff for
BS17720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-RB | 617..1395 | 9..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:32 Download gff for
BS17720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RB | 659..1425 | 17..783 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:32 Download gff for
BS17720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9728504..9728616 | 541..653 | 99 | -> | Plus |
3L | 9728715..9728844 | 654..783 | 100 | | Plus |
3L | 9727553..9727569 | 17..33 | 100 | -> | Plus |
3L | 9727787..9727907 | 34..154 | 100 | -> | Plus |
3L | 9727985..9728149 | 155..319 | 100 | -> | Plus |
3L | 9728213..9728433 | 320..540 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:07 Download gff for
BS17720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9721604..9721716 | 541..653 | 99 | -> | Plus |
arm_3L | 9721815..9721944 | 654..783 | 100 | | Plus |
arm_3L | 9720653..9720669 | 17..33 | 100 | -> | Plus |
arm_3L | 9720887..9721007 | 34..154 | 100 | -> | Plus |
arm_3L | 9721085..9721249 | 155..319 | 100 | -> | Plus |
arm_3L | 9721313..9721533 | 320..540 | 100 | -> | Plus |
BS17720.3prime Sequence
798 bp (793 high quality bases) assembled on 2007-05-29
> BS17720.3prime
ATGGTCTAGAAAGCTTTCACTCGATAAAGTTGAAGCGAGTGAGCAGCTTG
TGGTAGAACCACCGCACCACCTGCTGGACTCGTCCGGCCAGCCAGGCGCA
AAGGCTGCTGGTGTGGCGCACCATCGACGCGTAGTGCTTGATGTGATCTA
ATAAAGTCCAGGGTGGATGGCCGCCGTTAATGTAGTTCACATAGGTGAAT
CCGTCCTTGCCCTTGCCCCGTATATTGTAGTAGTAGGGCAGGAATGAGTG
AAGCGTAAATCTTCTCTTCTCGTAGAAAAATATGGCAGGTTGATTGGTGG
TCAGCGTGTGCAGGAAGATCGCCTTCACCGAATGCCGCTCGGCCGTCGTC
AGGTGGTTCATTAGCGCGTCCAACAGCAGCGATCCGATGCCATTGCGTCG
ATGCGAACGATGGACGCCCAGCGACAGTATATAACCGACATCGGCGGAAC
GACCCATCGAGTCCGGCAGGATGCCCTTGTCCTCCTTGTTCACATTTCGA
TAGGGTTTGATTTCGGCAACGATTAAACCAATTATGGCCAGATTATATAC
AGCTGCCAGCGCAAAGAAGCGCGTGCTTGAGGTAATATCCTCATACCATG
ATAGTGGATAGTCGATTGGAAACCATTCTTGGCACAGCTGTCGCACCTCC
GTCAGATCGTCGGGCACCAGGAACCTTAGCTGCACATCGTTAATCGAGCA
CAGCGGTACGTGTTCGCAGTCCACACGCGTACTCTCGCTACTGGGCGGCG
CACTGTGTTTGTTGTAGAGTGTGAATTGTGCCATGTCGACTGATAACT
BS17720.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:24:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18177-PB | 768 | CG18177-RB | 1..768 | 784..17 | 3840 | 100 | Minus |
CG18177-PA | 831 | CG18177-RA | 365..831 | 483..17 | 2335 | 100 | Minus |
CG18177-PA | 831 | CG18177-RA | 1..304 | 784..481 | 1520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RB | 2231 | CG18177-RB | 659..1427 | 784..16 | 3845 | 100 | Minus |
Naa60-RC | 1378 | CG18177-RC | 659..1298 | 784..145 | 3185 | 99.8 | Minus |
Naa60-RA | 2294 | CG18177-RA | 1023..1490 | 483..16 | 2340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9728211..9728433 | 483..261 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 9727983..9728150 | 648..481 | 840 | 100 | Minus |
3L | 28110227 | 3L | 9728713..9728846 | 149..16 | 670 | 100 | Minus |
3L | 28110227 | 3L | 9727787..9727909 | 767..645 | 615 | 100 | Minus |
3L | 28110227 | 3L | 9728502..9728619 | 262..145 | 575 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:27:11 has no hits.
BS17720.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:24:18 Download gff for
BS17720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-PB | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:08 Download gff for
BS17720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RB | 652..1430 | 12..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:08 Download gff for
BS17720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RB | 652..1430 | 12..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:08 Download gff for
BS17720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9728213..9728433 | 261..481 | 100 | -> | Minus |
3L | 9728504..9728616 | 148..260 | 99 | -> | Minus |
3L | 9728715..9728849 | 12..147 | 98 | | Minus |
3L | 9727787..9727907 | 647..767 | 100 | -> | Minus |
3L | 9727985..9728149 | 482..646 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:08 Download gff for
BS17720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9720887..9721007 | 647..767 | 100 | -> | Minus |
arm_3L | 9721085..9721249 | 482..646 | 100 | -> | Minus |
arm_3L | 9721313..9721533 | 261..481 | 100 | -> | Minus |
arm_3L | 9721604..9721716 | 148..260 | 99 | -> | Minus |
arm_3L | 9721815..9721949 | 12..147 | 98 | | Minus |
BS17720.5prime Sequence
798 bp (798 high quality bases) assembled on 2007-05-29
> BS17720.5prime
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGACAAGGGCATCCTGCCGGACTCGATGGGTC
GTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGTCCATCGTTCGCAT
CGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGCTAATGAACCACCT
GACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTCCTGCACACGCTGA
CCACCAATCAACCTGCCATATTTTTCTACGAGAAGAGAAGATTTACGCTT
CACTCATTCCTGCCCTACTACTACAATATACGGGGCAAGGGCAAGGACGG
ATTCACCTATGTGAACTACATTAACGGCGGCCATCCACCCTGGACTTTAT
TAGATCACATCAAGCACTACGCGTCGATGGTGCGCCACACCAGCAGCCTT
TGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGCGGTGGTTCTACCA
CAAGCTGCTCACTCGCTTCAACTTTATCGAGTGAAAGCTTTCTAGACC
BS17720.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18177-PB | 768 | CG18177-RB | 1..768 | 17..784 | 3840 | 100 | Plus |
CG18177-PA | 831 | CG18177-RA | 365..831 | 318..784 | 2335 | 100 | Plus |
CG18177-PA | 831 | CG18177-RA | 1..304 | 17..320 | 1520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RB | 2231 | CG18177-RB | 659..1427 | 17..785 | 3845 | 100 | Plus |
Naa60-RC | 1378 | CG18177-RC | 659..1298 | 17..656 | 3185 | 99.8 | Plus |
Naa60-RA | 2294 | CG18177-RA | 1023..1490 | 318..785 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9728211..9728433 | 318..540 | 1115 | 100 | Plus |
3L | 28110227 | 3L | 9727983..9728150 | 153..320 | 840 | 100 | Plus |
3L | 28110227 | 3L | 9728713..9728846 | 652..785 | 670 | 100 | Plus |
3L | 28110227 | 3L | 9727787..9727909 | 34..156 | 615 | 100 | Plus |
3L | 28110227 | 3L | 9728502..9728619 | 539..656 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:56:40 has no hits.
BS17720.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:24:25 Download gff for
BS17720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-PB | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:42:53 Download gff for
BS17720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RB | 652..1430 | 9..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:28 Download gff for
BS17720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RB | 652..1430 | 9..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:28 Download gff for
BS17720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9727787..9727907 | 34..154 | 100 | -> | Plus |
3L | 9727985..9728149 | 155..319 | 100 | -> | Plus |
3L | 9728213..9728433 | 320..540 | 100 | -> | Plus |
3L | 9728504..9728616 | 541..653 | 99 | -> | Plus |
3L | 9728715..9728849 | 654..789 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:42:53 Download gff for
BS17720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9721085..9721249 | 155..319 | 100 | -> | Plus |
arm_3L | 9720887..9721007 | 34..154 | 100 | -> | Plus |
arm_3L | 9721313..9721533 | 320..540 | 100 | -> | Plus |
arm_3L | 9721604..9721716 | 541..653 | 99 | -> | Plus |
arm_3L | 9721815..9721949 | 654..789 | 98 | | Plus |
BS17720.pep Sequence
Translation from 16 to 783
> BS17720.pep
MAQFTLYNKHSAPPSSESTRVDCEHVPLCSINDVQLRFLVPDDLTEVRQL
CQEWFPIDYPLSWYEDITSSTRFFALAAVYNLAIIGLIVAEIKPYRNVNK
EDKGILPDSMGRSADVGYILSLGVHRSHRRNGIGSLLLDALMNHLTTAER
HSVKAIFLHTLTTNQPAIFFYEKRRFTLHSFLPYYYNIRGKGKDGFTYVN
YINGGHPPWTLLDHIKHYASMVRHTSSLCAWLAGRVQQVVRWFYHKLLTR
FNFIE*
BS17720.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-PB | 255 | CG18177-PB | 1..255 | 1..255 | 1370 | 100 | Plus |
Naa60-PA | 276 | CG18177-PA | 1..276 | 1..255 | 1338 | 92.4 | Plus |
Naa60-PC | 239 | CG18177-PC | 1..218 | 1..218 | 1134 | 97.7 | Plus |