Clone BS17720 Report

Search the DGRC for BS17720

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:177
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptNaa60-RB
Protein status:BS17720.pep: full length peptide match
Sequenced Size:800

Clone Sequence Records

BS17720.complete Sequence

800 bp assembled on 2010-02-09

GenBank Submission: KX802679

> BS17720.complete
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGACAAGGGCATCCTGCCGGACTCGATGGGTC
GTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGTCCATCGTTCGCAT
CGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGCTAATGAACCACCT
GACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTCCTGCACACGCTGA
CCACCAATCAACCTGCCATATTTTTCTACGAGAAGAGAAGATTTACGCTT
CACTCATTCCTGCCCTACTACTACAATATACGGGGCAAGGGCAAGGACGG
ATTCACCTATGTGAACTACATTAACGGCGGCCATCCACCCTGGACTTTAT
TAGATCACATCAAGCACTACGCGTCGATGGTGCGCCACACCAGCAGCCTT
TGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGCGGTGGTTCTACCA
CAAGCTGCTCACTCGCTTCAACTTTATCGAGTGAAAGCTTTCTAGACCAT

BS17720.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-RB 768 CG18177-PB 1..768 17..784 3840 100 Plus
Naa60-RC 720 CG18177-PC 1..640 17..656 3185 99.8 Plus
Naa60-RA 831 CG18177-PA 365..831 318..784 2335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-RB 2231 CG18177-RB 659..1427 17..785 3845 100 Plus
Naa60-RC 1378 CG18177-RC 659..1298 17..656 3185 99.8 Plus
Naa60-RA 2294 CG18177-RA 1023..1490 318..785 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9728211..9728433 318..540 1115 100 Plus
3L 28110227 3L 9727983..9728150 153..320 840 100 Plus
3L 28110227 3L 9728713..9728846 652..785 670 100 Plus
3L 28110227 3L 9727787..9727909 34..156 615 100 Plus
3L 28110227 3L 9728502..9728619 539..656 575 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 03:07:52 has no hits.

BS17720.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:03 Download gff for BS17720.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RB 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:25 Download gff for BS17720.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RB 624..1390 17..783 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:07 Download gff for BS17720.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 659..1425 17..783 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:03 Download gff for BS17720.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RB 617..1395 9..789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:32 Download gff for BS17720.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 659..1425 17..783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:32 Download gff for BS17720.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9728504..9728616 541..653 99 -> Plus
3L 9728715..9728844 654..783 100   Plus
3L 9727553..9727569 17..33 100 -> Plus
3L 9727787..9727907 34..154 100 -> Plus
3L 9727985..9728149 155..319 100 -> Plus
3L 9728213..9728433 320..540 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:07 Download gff for BS17720.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9721604..9721716 541..653 99 -> Plus
arm_3L 9721815..9721944 654..783 100   Plus
arm_3L 9720653..9720669 17..33 100 -> Plus
arm_3L 9720887..9721007 34..154 100 -> Plus
arm_3L 9721085..9721249 155..319 100 -> Plus
arm_3L 9721313..9721533 320..540 100 -> Plus

BS17720.3prime Sequence

798 bp (793 high quality bases) assembled on 2007-05-29

> BS17720.3prime
ATGGTCTAGAAAGCTTTCACTCGATAAAGTTGAAGCGAGTGAGCAGCTTG
TGGTAGAACCACCGCACCACCTGCTGGACTCGTCCGGCCAGCCAGGCGCA
AAGGCTGCTGGTGTGGCGCACCATCGACGCGTAGTGCTTGATGTGATCTA
ATAAAGTCCAGGGTGGATGGCCGCCGTTAATGTAGTTCACATAGGTGAAT
CCGTCCTTGCCCTTGCCCCGTATATTGTAGTAGTAGGGCAGGAATGAGTG
AAGCGTAAATCTTCTCTTCTCGTAGAAAAATATGGCAGGTTGATTGGTGG
TCAGCGTGTGCAGGAAGATCGCCTTCACCGAATGCCGCTCGGCCGTCGTC
AGGTGGTTCATTAGCGCGTCCAACAGCAGCGATCCGATGCCATTGCGTCG
ATGCGAACGATGGACGCCCAGCGACAGTATATAACCGACATCGGCGGAAC
GACCCATCGAGTCCGGCAGGATGCCCTTGTCCTCCTTGTTCACATTTCGA
TAGGGTTTGATTTCGGCAACGATTAAACCAATTATGGCCAGATTATATAC
AGCTGCCAGCGCAAAGAAGCGCGTGCTTGAGGTAATATCCTCATACCATG
ATAGTGGATAGTCGATTGGAAACCATTCTTGGCACAGCTGTCGCACCTCC
GTCAGATCGTCGGGCACCAGGAACCTTAGCTGCACATCGTTAATCGAGCA
CAGCGGTACGTGTTCGCAGTCCACACGCGTACTCTCGCTACTGGGCGGCG
CACTGTGTTTGTTGTAGAGTGTGAATTGTGCCATGTCGACTGATAACT

BS17720.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18177-PB 768 CG18177-RB 1..768 784..17 3840 100 Minus
CG18177-PA 831 CG18177-RA 365..831 483..17 2335 100 Minus
CG18177-PA 831 CG18177-RA 1..304 784..481 1520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-RB 2231 CG18177-RB 659..1427 784..16 3845 100 Minus
Naa60-RC 1378 CG18177-RC 659..1298 784..145 3185 99.8 Minus
Naa60-RA 2294 CG18177-RA 1023..1490 483..16 2340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9728211..9728433 483..261 1115 100 Minus
3L 28110227 3L 9727983..9728150 648..481 840 100 Minus
3L 28110227 3L 9728713..9728846 149..16 670 100 Minus
3L 28110227 3L 9727787..9727909 767..645 615 100 Minus
3L 28110227 3L 9728502..9728619 262..145 575 99.2 Minus
Blast to na_te.dros performed on 2015-02-10 16:27:11 has no hits.

BS17720.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:24:18 Download gff for BS17720.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18177-PB 1..768 17..784 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:08 Download gff for BS17720.3prime
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 652..1430 12..792 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:08 Download gff for BS17720.3prime
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 652..1430 12..792 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:08 Download gff for BS17720.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9728213..9728433 261..481 100 -> Minus
3L 9728504..9728616 148..260 99 -> Minus
3L 9728715..9728849 12..147 98   Minus
3L 9727787..9727907 647..767 100 -> Minus
3L 9727985..9728149 482..646 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:08 Download gff for BS17720.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9720887..9721007 647..767 100 -> Minus
arm_3L 9721085..9721249 482..646 100 -> Minus
arm_3L 9721313..9721533 261..481 100 -> Minus
arm_3L 9721604..9721716 148..260 99 -> Minus
arm_3L 9721815..9721949 12..147 98   Minus

BS17720.5prime Sequence

798 bp (798 high quality bases) assembled on 2007-05-29

> BS17720.5prime
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGACAAGGGCATCCTGCCGGACTCGATGGGTC
GTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGTCCATCGTTCGCAT
CGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGCTAATGAACCACCT
GACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTCCTGCACACGCTGA
CCACCAATCAACCTGCCATATTTTTCTACGAGAAGAGAAGATTTACGCTT
CACTCATTCCTGCCCTACTACTACAATATACGGGGCAAGGGCAAGGACGG
ATTCACCTATGTGAACTACATTAACGGCGGCCATCCACCCTGGACTTTAT
TAGATCACATCAAGCACTACGCGTCGATGGTGCGCCACACCAGCAGCCTT
TGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGCGGTGGTTCTACCA
CAAGCTGCTCACTCGCTTCAACTTTATCGAGTGAAAGCTTTCTAGACC

BS17720.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG18177-PB 768 CG18177-RB 1..768 17..784 3840 100 Plus
CG18177-PA 831 CG18177-RA 365..831 318..784 2335 100 Plus
CG18177-PA 831 CG18177-RA 1..304 17..320 1520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-RB 2231 CG18177-RB 659..1427 17..785 3845 100 Plus
Naa60-RC 1378 CG18177-RC 659..1298 17..656 3185 99.8 Plus
Naa60-RA 2294 CG18177-RA 1023..1490 318..785 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9728211..9728433 318..540 1115 100 Plus
3L 28110227 3L 9727983..9728150 153..320 840 100 Plus
3L 28110227 3L 9728713..9728846 652..785 670 100 Plus
3L 28110227 3L 9727787..9727909 34..156 615 100 Plus
3L 28110227 3L 9728502..9728619 539..656 575 99.2 Plus
Blast to na_te.dros performed on 2015-02-11 23:56:40 has no hits.

BS17720.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:24:25 Download gff for BS17720.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18177-PB 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:42:53 Download gff for BS17720.5prime
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 652..1430 9..789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:28 Download gff for BS17720.5prime
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 652..1430 9..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:28 Download gff for BS17720.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9727787..9727907 34..154 100 -> Plus
3L 9727985..9728149 155..319 100 -> Plus
3L 9728213..9728433 320..540 100 -> Plus
3L 9728504..9728616 541..653 99 -> Plus
3L 9728715..9728849 654..789 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:42:53 Download gff for BS17720.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9721085..9721249 155..319 100 -> Plus
arm_3L 9720887..9721007 34..154 100 -> Plus
arm_3L 9721313..9721533 320..540 100 -> Plus
arm_3L 9721604..9721716 541..653 99 -> Plus
arm_3L 9721815..9721949 654..789 98   Plus

BS17720.pep Sequence

Translation from 16 to 783

> BS17720.pep
MAQFTLYNKHSAPPSSESTRVDCEHVPLCSINDVQLRFLVPDDLTEVRQL
CQEWFPIDYPLSWYEDITSSTRFFALAAVYNLAIIGLIVAEIKPYRNVNK
EDKGILPDSMGRSADVGYILSLGVHRSHRRNGIGSLLLDALMNHLTTAER
HSVKAIFLHTLTTNQPAIFFYEKRRFTLHSFLPYYYNIRGKGKDGFTYVN
YINGGHPPWTLLDHIKHYASMVRHTSSLCAWLAGRVQQVVRWFYHKLLTR
FNFIE*

BS17720.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-PB 255 CG18177-PB 1..255 1..255 1370 100 Plus
Naa60-PA 276 CG18177-PA 1..276 1..255 1338 92.4 Plus
Naa60-PC 239 CG18177-PC 1..218 1..218 1134 97.7 Plus