Clone Sequence Records
BS17724.complete Sequence
1025 bp assembled on 2010-02-09
GenBank Submission: KX801987
> BS17724.complete
GAAGTTATCAGTCGACATGCTAAAAGTGTCAGTCGGCAAGCACAAGTTCA
TCAACATGCGTCCAAGCTGGATGGGAACGGCGGCCTGGCTGCTGGGGCTC
TACTGCCTCCTGTGCATCGCCGCGATGGTCGAAGGTGCCAGCAATTCGGT
AGCTCTGGCTGCGCCCACTGCATCCGCTGCCAAGGATGTCGCCCATATGC
ACAGGTCGAAGAGGCTGGACAGGCGATCAGGAGCGGGATCGAGTCCTCTG
ACGGCTATCAAGCAGCCCAAGCAACTGGCCAGAAGCGCCCATGGACTCAA
CAAGAAGCTGCTCAGCCAGATGGGCTTCATGAAGGTGAAGGCGCCCAACA
GCCACAACAGGAAGCGACTGGCGGTTGAGTCACGACGCCACTCCTCGCGC
GATGATTCACACATGTTCATCATCAAATTGCCGCCAAATATGCACTACTA
TGCTGGACCCGGTGCGAAGAATTCCATCGCAGAGCAGCAGGACAAGTCTG
GCCACAAAGGTAACGCACCCAGCACGATGGCATCCAGCACACCAGTCGCA
GCAGCCGCATCAGCAGCAGTTGCAACATCACCAGTTGCCGAAGCGTCGGC
GTTGAAAGCTAACGGGAAAAAGGTCTCGTTTCCCTTCAGCTCGAATGGCC
GGCCGGGCCGCATCTACCACTGGAACCTGCCCGTCCTGAAGGAGGCGCTG
GCCAAGAAGCCCCACTTCGCCCACGTCTCGGCGGCGGATCGCAATAGACT
GCTGGACATCCAGGGTGTGCCCACGTGGCGCCAGCCCTGGGAGAACGAGA
CCGCCGAGAAGGGCTTCAGTGCCGGCGGCGGGAAGGCCAAGTATCGCAAA
TCCCTGAAGCCCAAGTCACCCACATATTATGCACCCGCCCAGGCGGTCAG
CAAGCAGAGCTTCCACAAGTACTTCGCGGGCAATGGCAAGCCCAAGGGAT
TCTATGTCATCAAGGAGCACCAGAAGAAGCCGCAGTTCTACCAGAACATC
ATCTCGTAAAAGCTTTCTAGACCAT
BS17724.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-RA | 993 | CG12880-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-RA | 1894 | CG12880-RA | 223..1217 | 15..1009 | 4975 | 100 | Plus |
CG31055-RB | 2018 | CG31055-RB | 1384..1466 | 97..15 | 415 | 100 | Minus |
CG31055-RC | 2073 | CG31055-RC | 1439..1521 | 97..15 | 415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27691725..27692113 | 621..1009 | 1945 | 100 | Plus |
3R | 32079331 | 3R | 27690550..27690861 | 313..624 | 1560 | 100 | Plus |
3R | 32079331 | 3R | 27689785..27690004 | 96..315 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 27686184..27686266 | 15..97 | 415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 542..600 | 124 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2476 | 479..583 | 117 | 60.2 | Plus |
BS17724.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:05 Download gff for
BS17724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 1..993 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:27 Download gff for
BS17724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 225..1215 | 17..1007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:09 Download gff for
BS17724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 225..1215 | 17..1007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:05 Download gff for
BS17724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 223..1217 | 15..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:33 Download gff for
BS17724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 225..1215 | 17..1007 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:33 Download gff for
BS17724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27686186..27686265 | 17..96 | 100 | -> | Plus |
3R | 27689786..27690004 | 97..315 | 100 | -> | Plus |
3R | 27690553..27690859 | 316..622 | 100 | -> | Plus |
3R | 27691727..27692111 | 623..1007 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:09 Download gff for
BS17724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23511908..23511987 | 17..96 | 100 | -> | Plus |
arm_3R | 23515508..23515726 | 97..315 | 100 | -> | Plus |
arm_3R | 23516275..23516581 | 316..622 | 100 | -> | Plus |
arm_3R | 23517449..23517833 | 623..1007 | 100 | | Plus |
BS17724.3prime Sequence
867 bp (712 high quality bases) assembled on 2007-05-29
> BS17724.3prime
ATGGTCTAGAAAGCTTTTACGAGATGATGTTCTGGTAGAACTGCGGCTTC
TTCTGGTGCTCCTTGATGACATAGAATCCCTTGGGCTTGCCATTGCCCGC
GAAGTACTTGTGGAAGCTCTGCTTGCTGACCGCCTGGGCGGGTGCATAAT
ATGTGGGTGACTTGGGCTTCAGGGATTTGCGATACTTGGCCTTCCCGCCG
CCGGCACTGAAGCCCTTCTCGGCGGTCTCGTTCTCCCAGGGCTGGCGCCA
CGTGGGCACACCCTGGATGTCCAGCAGTCTATTGCGATCCGCCGCCGAGA
CGTGGGCGAAGTGGGGCTTCTTGGCCAGCGCCTCCTTCAGGACGGGCAGG
TTCCAGTGGTAGATGCGGCCCGGCCGGCCATTCGAGCTGAAGGGAAACGA
GACCTTTTTCCCGTTAGCTTTCAACGCCGACGCTTCGGCAACTGGTGATG
TTGCAACTGCTGCTGATGCGGCTGCTGCGACTGGTGTGCTGGATGCCATC
GTGCTGGGTGCGTTACCTTTGTGGCCAGACTTGTCCTGCTGCTCTGCGAT
GGAATTCTTCGCACCGGGTCCAGCATAGTAGTGCATATTTGGCGGCAATT
TGATGATGAACATGTGTGAATCATCGCGCGAGGAGTGGCGTCGTGACTCA
ACCGCCAGTCGCTTCCTGTTGTGGCTGTTGGGCGCCTTCACCTTCATGAA
GCCCATCTGGCTGAGCAGCTTCTTGTTGAGTCCATGGGCGCTTCTGGCCA
GTTGCTTGGGCTGCTTGATAGCCGTCAGAGGACTCGATCCCGCTCCTGAT
CGCCTGTCCAGCCTCTTCGACCTGTGCATATGGGCGACATCCTTGGCAGC
GGATGCAGTGGGCGCCA
BS17724.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:24:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-PA | 993 | CG12880-RA | 145..993 | 865..17 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-RA | 1894 | CG12880-RA | 369..1217 | 865..17 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:48:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27691725..27692113 | 405..17 | 1945 | 100 | Minus |
3R | 32079331 | 3R | 27690550..27690861 | 713..402 | 1560 | 100 | Minus |
3R | 32079331 | 3R | 27689850..27690004 | 865..711 | 775 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 13:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 484..426 | 124 | 67.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2476 | 547..443 | 117 | 60.2 | Minus |
BS17724.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:24:58 Download gff for
BS17724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-PA | 144..993 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:01:44 Download gff for
BS17724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 368..1217 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:06:22 Download gff for
BS17724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 368..1217 | 17..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:22 Download gff for
BS17724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27690553..27690859 | 404..710 | 100 | -> | Minus |
3R | 27689849..27690004 | 711..866 | 99 | -> | Minus |
3R | 27691727..27692113 | 17..403 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:01:44 Download gff for
BS17724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23515571..23515726 | 711..866 | 99 | -> | Minus |
arm_3R | 23516275..23516581 | 404..710 | 100 | -> | Minus |
arm_3R | 23517449..23517835 | 17..403 | 100 | | Minus |
BS17724.5prime Sequence
786 bp (740 high quality bases) assembled on 2007-05-29
> BS17724.5prime
GAAGTTATCAGTCGACATGCTAAAAGTGTCAGTCGGCAAGCACAAGTTCA
TCAACATGCGTCCAAGCTGGATGGGAACGGCGGCCTGGCTGCTGGGGCTC
TACTGCCTCCTGTGCATCGCCGCGATGGTCGAAGGTGCCAGCAATTCGGT
AGCTCTGGCTGCGCCCACTGCATCCGCTGCCAAGGATGTCGCCCATATGC
ACAGGTCGAAGAGGCTGGACAGGCGATCAGGAGCGGGATCGAGTCCTCTG
ACGGCTATCAAGCAGCCCAAGCAACTGGCCAGAAGCGCCCATGGACTCAA
CAAGAAGCTGCTCAGCCAGATGGGCTTCATGAAGGTGAAGGCGCCCAACA
GCCACAACAGGAAGCGACTGGCGGTTGAGTCACGACGCCACTCCTCGCGC
GATGATTCACACATGTTCATCATCAAATTGCCGCCAAATATGCACTACTA
TGCTGGACCCGGTGCGAAGAATTCCATCGCAGAGCAGCAGGACAAGTCTG
GCCACAAAGGTAACGCACCCAGCACGATGGCATCCAGCACACCAGTCGCA
GCAGCCGCATCAGCAGCAGTTGCAACATCACCAGTTGCCGAAGCGTCGGC
GTTGAAAGCTAACGGGAAAAAGGTCTCGTTTCCCTTCAGCTCGAATGGCC
GGCCGGGCCGCATCTACCACTGGAACCTGCCCGTCCTGAAGGAGGCGCTG
GCCAAGAAGCCCCACTTCGCCCACGTCTCGGCGGCGGATCGCAATAGACT
GCTGGACATCCAGGGTGTGCCCACGTGGCGCCAGCC
BS17724.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-PA | 993 | CG12880-RA | 1..770 | 17..786 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-RA | 1894 | CG12880-RA | 223..994 | 15..786 | 3860 | 100 | Plus |
CG31055-RB | 2018 | CG31055-RB | 1384..1466 | 97..15 | 415 | 100 | Minus |
CG31055-RC | 2073 | CG31055-RC | 1439..1521 | 97..15 | 415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27690550..27690861 | 313..624 | 1560 | 100 | Plus |
3R | 32079331 | 3R | 27689785..27690004 | 96..315 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 27691725..27691890 | 621..786 | 830 | 100 | Plus |
3R | 32079331 | 3R | 27686184..27686266 | 15..97 | 415 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 16:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 542..600 | 124 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2476 | 479..583 | 117 | 60.2 | Plus |
BS17724.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:25:02 Download gff for
BS17724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-PA | 1..770 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:19:57 Download gff for
BS17724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 223..994 | 15..786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:32 Download gff for
BS17724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 223..994 | 15..786 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:32 Download gff for
BS17724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27686184..27686265 | 15..96 | 100 | -> | Plus |
3R | 27689786..27690004 | 97..315 | 100 | -> | Plus |
3R | 27690553..27690859 | 316..622 | 100 | -> | Plus |
3R | 27691727..27691890 | 623..786 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:19:57 Download gff for
BS17724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23511906..23511987 | 15..96 | 100 | -> | Plus |
arm_3R | 23515508..23515726 | 97..315 | 100 | -> | Plus |
arm_3R | 23516275..23516581 | 316..622 | 100 | -> | Plus |
arm_3R | 23517449..23517612 | 623..786 | 100 | | Plus |
BS17724.pep Sequence
Translation from 16 to 1008
> BS17724.pep
MLKVSVGKHKFINMRPSWMGTAAWLLGLYCLLCIAAMVEGASNSVALAAP
TASAAKDVAHMHRSKRLDRRSGAGSSPLTAIKQPKQLARSAHGLNKKLLS
QMGFMKVKAPNSHNRKRLAVESRRHSSRDDSHMFIIKLPPNMHYYAGPGA
KNSIAEQQDKSGHKGNAPSTMASSTPVAAAASAAVATSPVAEASALKANG
KKVSFPFSSNGRPGRIYHWNLPVLKEALAKKPHFAHVSAADRNRLLDIQG
VPTWRQPWENETAEKGFSAGGGKAKYRKSLKPKSPTYYAPAQAVSKQSFH
KYFAGNGKPKGFYVIKEHQKKPQFYQNIIS*
BS17724.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-PA | 330 | CG12880-PA | 1..330 | 1..330 | 1721 | 100 | Plus |