Clone BS17724 Report

Search the DGRC for BS17724

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:177
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG12880-RA
Protein status:BS17724.pep: full length peptide match
Sequenced Size:1025

Clone Sequence Records

BS17724.complete Sequence

1025 bp assembled on 2010-02-09

GenBank Submission: KX801987

> BS17724.complete
GAAGTTATCAGTCGACATGCTAAAAGTGTCAGTCGGCAAGCACAAGTTCA
TCAACATGCGTCCAAGCTGGATGGGAACGGCGGCCTGGCTGCTGGGGCTC
TACTGCCTCCTGTGCATCGCCGCGATGGTCGAAGGTGCCAGCAATTCGGT
AGCTCTGGCTGCGCCCACTGCATCCGCTGCCAAGGATGTCGCCCATATGC
ACAGGTCGAAGAGGCTGGACAGGCGATCAGGAGCGGGATCGAGTCCTCTG
ACGGCTATCAAGCAGCCCAAGCAACTGGCCAGAAGCGCCCATGGACTCAA
CAAGAAGCTGCTCAGCCAGATGGGCTTCATGAAGGTGAAGGCGCCCAACA
GCCACAACAGGAAGCGACTGGCGGTTGAGTCACGACGCCACTCCTCGCGC
GATGATTCACACATGTTCATCATCAAATTGCCGCCAAATATGCACTACTA
TGCTGGACCCGGTGCGAAGAATTCCATCGCAGAGCAGCAGGACAAGTCTG
GCCACAAAGGTAACGCACCCAGCACGATGGCATCCAGCACACCAGTCGCA
GCAGCCGCATCAGCAGCAGTTGCAACATCACCAGTTGCCGAAGCGTCGGC
GTTGAAAGCTAACGGGAAAAAGGTCTCGTTTCCCTTCAGCTCGAATGGCC
GGCCGGGCCGCATCTACCACTGGAACCTGCCCGTCCTGAAGGAGGCGCTG
GCCAAGAAGCCCCACTTCGCCCACGTCTCGGCGGCGGATCGCAATAGACT
GCTGGACATCCAGGGTGTGCCCACGTGGCGCCAGCCCTGGGAGAACGAGA
CCGCCGAGAAGGGCTTCAGTGCCGGCGGCGGGAAGGCCAAGTATCGCAAA
TCCCTGAAGCCCAAGTCACCCACATATTATGCACCCGCCCAGGCGGTCAG
CAAGCAGAGCTTCCACAAGTACTTCGCGGGCAATGGCAAGCCCAAGGGAT
TCTATGTCATCAAGGAGCACCAGAAGAAGCCGCAGTTCTACCAGAACATC
ATCTCGTAAAAGCTTTCTAGACCAT

BS17724.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-RA 993 CG12880-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-RA 1894 CG12880-RA 223..1217 15..1009 4975 100 Plus
CG31055-RB 2018 CG31055-RB 1384..1466 97..15 415 100 Minus
CG31055-RC 2073 CG31055-RC 1439..1521 97..15 415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27691725..27692113 621..1009 1945 100 Plus
3R 32079331 3R 27690550..27690861 313..624 1560 100 Plus
3R 32079331 3R 27689785..27690004 96..315 1100 100 Plus
3R 32079331 3R 27686184..27686266 15..97 415 100 Plus
Blast to na_te.dros performed 2014-11-28 03:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1575 542..600 124 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2476 479..583 117 60.2 Plus

BS17724.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:05 Download gff for BS17724.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 1..993 17..1009 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:27 Download gff for BS17724.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 225..1215 17..1007 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:09 Download gff for BS17724.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 225..1215 17..1007 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:05 Download gff for BS17724.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 223..1217 15..1009 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:33 Download gff for BS17724.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 225..1215 17..1007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:33 Download gff for BS17724.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27686186..27686265 17..96 100 -> Plus
3R 27689786..27690004 97..315 100 -> Plus
3R 27690553..27690859 316..622 100 -> Plus
3R 27691727..27692111 623..1007 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:09 Download gff for BS17724.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23511908..23511987 17..96 100 -> Plus
arm_3R 23515508..23515726 97..315 100 -> Plus
arm_3R 23516275..23516581 316..622 100 -> Plus
arm_3R 23517449..23517833 623..1007 100   Plus

BS17724.3prime Sequence

867 bp (712 high quality bases) assembled on 2007-05-29

> BS17724.3prime
ATGGTCTAGAAAGCTTTTACGAGATGATGTTCTGGTAGAACTGCGGCTTC
TTCTGGTGCTCCTTGATGACATAGAATCCCTTGGGCTTGCCATTGCCCGC
GAAGTACTTGTGGAAGCTCTGCTTGCTGACCGCCTGGGCGGGTGCATAAT
ATGTGGGTGACTTGGGCTTCAGGGATTTGCGATACTTGGCCTTCCCGCCG
CCGGCACTGAAGCCCTTCTCGGCGGTCTCGTTCTCCCAGGGCTGGCGCCA
CGTGGGCACACCCTGGATGTCCAGCAGTCTATTGCGATCCGCCGCCGAGA
CGTGGGCGAAGTGGGGCTTCTTGGCCAGCGCCTCCTTCAGGACGGGCAGG
TTCCAGTGGTAGATGCGGCCCGGCCGGCCATTCGAGCTGAAGGGAAACGA
GACCTTTTTCCCGTTAGCTTTCAACGCCGACGCTTCGGCAACTGGTGATG
TTGCAACTGCTGCTGATGCGGCTGCTGCGACTGGTGTGCTGGATGCCATC
GTGCTGGGTGCGTTACCTTTGTGGCCAGACTTGTCCTGCTGCTCTGCGAT
GGAATTCTTCGCACCGGGTCCAGCATAGTAGTGCATATTTGGCGGCAATT
TGATGATGAACATGTGTGAATCATCGCGCGAGGAGTGGCGTCGTGACTCA
ACCGCCAGTCGCTTCCTGTTGTGGCTGTTGGGCGCCTTCACCTTCATGAA
GCCCATCTGGCTGAGCAGCTTCTTGTTGAGTCCATGGGCGCTTCTGGCCA
GTTGCTTGGGCTGCTTGATAGCCGTCAGAGGACTCGATCCCGCTCCTGAT
CGCCTGTCCAGCCTCTTCGACCTGTGCATATGGGCGACATCCTTGGCAGC
GGATGCAGTGGGCGCCA

BS17724.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-PA 993 CG12880-RA 145..993 865..17 4245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-RA 1894 CG12880-RA 369..1217 865..17 4245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27691725..27692113 405..17 1945 100 Minus
3R 32079331 3R 27690550..27690861 713..402 1560 100 Minus
3R 32079331 3R 27689850..27690004 865..711 775 100 Minus
Blast to na_te.dros performed 2015-02-13 13:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1575 484..426 124 67.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2476 547..443 117 60.2 Minus

BS17724.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:24:58 Download gff for BS17724.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12880-PA 144..993 17..866 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:01:44 Download gff for BS17724.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 368..1217 17..866 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:06:22 Download gff for BS17724.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 368..1217 17..866 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:22 Download gff for BS17724.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27690553..27690859 404..710 100 -> Minus
3R 27689849..27690004 711..866 99 -> Minus
3R 27691727..27692113 17..403 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:01:44 Download gff for BS17724.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23515571..23515726 711..866 99 -> Minus
arm_3R 23516275..23516581 404..710 100 -> Minus
arm_3R 23517449..23517835 17..403 100   Minus

BS17724.5prime Sequence

786 bp (740 high quality bases) assembled on 2007-05-29

> BS17724.5prime
GAAGTTATCAGTCGACATGCTAAAAGTGTCAGTCGGCAAGCACAAGTTCA
TCAACATGCGTCCAAGCTGGATGGGAACGGCGGCCTGGCTGCTGGGGCTC
TACTGCCTCCTGTGCATCGCCGCGATGGTCGAAGGTGCCAGCAATTCGGT
AGCTCTGGCTGCGCCCACTGCATCCGCTGCCAAGGATGTCGCCCATATGC
ACAGGTCGAAGAGGCTGGACAGGCGATCAGGAGCGGGATCGAGTCCTCTG
ACGGCTATCAAGCAGCCCAAGCAACTGGCCAGAAGCGCCCATGGACTCAA
CAAGAAGCTGCTCAGCCAGATGGGCTTCATGAAGGTGAAGGCGCCCAACA
GCCACAACAGGAAGCGACTGGCGGTTGAGTCACGACGCCACTCCTCGCGC
GATGATTCACACATGTTCATCATCAAATTGCCGCCAAATATGCACTACTA
TGCTGGACCCGGTGCGAAGAATTCCATCGCAGAGCAGCAGGACAAGTCTG
GCCACAAAGGTAACGCACCCAGCACGATGGCATCCAGCACACCAGTCGCA
GCAGCCGCATCAGCAGCAGTTGCAACATCACCAGTTGCCGAAGCGTCGGC
GTTGAAAGCTAACGGGAAAAAGGTCTCGTTTCCCTTCAGCTCGAATGGCC
GGCCGGGCCGCATCTACCACTGGAACCTGCCCGTCCTGAAGGAGGCGCTG
GCCAAGAAGCCCCACTTCGCCCACGTCTCGGCGGCGGATCGCAATAGACT
GCTGGACATCCAGGGTGTGCCCACGTGGCGCCAGCC

BS17724.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-PA 993 CG12880-RA 1..770 17..786 3850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-RA 1894 CG12880-RA 223..994 15..786 3860 100 Plus
CG31055-RB 2018 CG31055-RB 1384..1466 97..15 415 100 Minus
CG31055-RC 2073 CG31055-RC 1439..1521 97..15 415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27690550..27690861 313..624 1560 100 Plus
3R 32079331 3R 27689785..27690004 96..315 1100 100 Plus
3R 32079331 3R 27691725..27691890 621..786 830 100 Plus
3R 32079331 3R 27686184..27686266 15..97 415 100 Plus
Blast to na_te.dros performed 2015-02-12 16:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1575 542..600 124 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2476 479..583 117 60.2 Plus

BS17724.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:25:02 Download gff for BS17724.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12880-PA 1..770 17..786 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:19:57 Download gff for BS17724.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 223..994 15..786 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:32 Download gff for BS17724.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 223..994 15..786 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:32 Download gff for BS17724.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27686184..27686265 15..96 100 -> Plus
3R 27689786..27690004 97..315 100 -> Plus
3R 27690553..27690859 316..622 100 -> Plus
3R 27691727..27691890 623..786 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:19:57 Download gff for BS17724.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23511906..23511987 15..96 100 -> Plus
arm_3R 23515508..23515726 97..315 100 -> Plus
arm_3R 23516275..23516581 316..622 100 -> Plus
arm_3R 23517449..23517612 623..786 100   Plus

BS17724.pep Sequence

Translation from 16 to 1008

> BS17724.pep
MLKVSVGKHKFINMRPSWMGTAAWLLGLYCLLCIAAMVEGASNSVALAAP
TASAAKDVAHMHRSKRLDRRSGAGSSPLTAIKQPKQLARSAHGLNKKLLS
QMGFMKVKAPNSHNRKRLAVESRRHSSRDDSHMFIIKLPPNMHYYAGPGA
KNSIAEQQDKSGHKGNAPSTMASSTPVAAAASAAVATSPVAEASALKANG
KKVSFPFSSNGRPGRIYHWNLPVLKEALAKKPHFAHVSAADRNRLLDIQG
VPTWRQPWENETAEKGFSAGGGKAKYRKSLKPKSPTYYAPAQAVSKQSFH
KYFAGNGKPKGFYVIKEHQKKPQFYQNIIS*

BS17724.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-PA 330 CG12880-PA 1..330 1..330 1721 100 Plus