Clone Sequence Records
BS17729.complete Sequence
3419 bp assembled on 2010-07-15
GenBank Submission: KX802201
> BS17729.complete
GAAGTTATCAGTCGACATGTCGGACATTAACGATGACCTGCTCAACTACG
AGCTGGGCGATGACATCGATGACCAAGCTCTGCTCGGCGCCGATGAGGAT
GAGTTGCTACTCTCGGACGAAGAGCTCGAAAAGGATGTCACCAGCGAGGT
GAAGCAGCAGATGCGCGCCGAGGCCGAGGAGTGGGCCCAGGAGCAGATTA
GACAGCACGAGCGCAAGCACAAGGAGCAATTGCAGGCAGATGCGACTGCA
GCGACTGAAGTCACTGTTGCAGCCACGGCCACCGCAGAGGTAGCACCAAC
TTTAAGGGCGCAACCAGAGCTAGCTTCATCTCCTGCTCCGGATCCTGTTC
CTGCGAAACCTCTAGTCGCTCAGGTGGAGAAACATGTTGACACAGCCCAC
GCGGCTGTGGCAGCTGAGCCAGCGAAGGAACTGGTGTCAGCCAGTCGCTC
GGAATCCCCACAACAGCAAGCTAAGGAGGAGGCGCCTCCAGCTGATTGCG
CCGAAAAGGAGGCGACTCAGAATAATGGCAACAGCGAGGAACAAGCTGAG
AACGCTGGCAGTCAGAGTGAGGCTGAACGAGGACTGGGCTTGTGCTCGCT
ACTGGCCTCATCCCAAGAGAGCCTGCCCAGCGCCAGCTCAGCCTCTGTGA
TTTCAGATCCGCGAGAGGACGACGAAGAGCGCGAGGAGCGCACCAACTAC
AAGACGGCCAGCGAGCGATCTGACAACAATCTGAGGCAGCAGCAAGAGCA
CGCACACATGTCGCCCTACCAGCACCAGCAGCGGCGACTCCACGGCCATG
GAGATAAACCCCGCGTGGGCGGAGGTGGACGCTTCATGCATGGCCAGCAG
CAGCAGCAGCAGCAGCAACAGAGCCAGATGGGCAAGCCGCCGCGTGGAAT
TGGAACGCGCCACCATCTGCTACGCAATCCGTCGCCAAGTTTCGGCATAC
AGCAGCAGCGCATGGGCATGGCCGGGATGCAACCGCCGCCACAGCGATAT
GGCATGCCGGGCCAGTACCCGGCAACTCAGCCACCCAACCAGTCACCACA
ACAAGCACCGACCAACACACAACAGCCACACAGCGCTCCCGCCTCTCCCC
TCCACACTCCCACGCATTCGCACATGATGCACCACAGTCACAATCCGAAC
GGAGGCGTGCTGCACCACCTGCTGCCGCATCCGCACGAGCAGGTGCGTGT
GGGTCTGCTGCAACCACCGCCGCTGGCATATGCGCCCAATCCGGGTGGCT
ATCGCAATGGAGCACTTCTGGGTCCGGGACCGGGACCTGGTTTGCATCAG
CAACACCAGTCGCCGCACCAGCAACAGTCGGGCATGCGTCCGCCGCTGTA
TCGGAATGCCCCGCCATCGTACGGCTACGACCAGGGACATCCACCCCAGC
ATCCGCAGCAGTTCATGCGGCCTCACAACGGCTGGCGACCGCAGGGGGAC
AATGCGCGCATGCAGCGACCACCACTGCAAACGCTGCCACCGCACATGAT
GCCCGGCGCACCGCCGAACTATGCCAATGGCATGGGAATGCGAGGACCGC
CGCCCCAGCAACAGCAATCGCAGCAGCCGCCACAGCAGCAGCCAGCACCG
CAGCAGGCGGGCAATCCCCTACAGCAGGCCGTCAATCCTGGCCAGCCCCC
TCAACAGCCGAATGGACCGCCGCAGCAGCAGGGCTCATCATCGGTGCCCC
GGGTCAGCAAGGTGCTCATCAATCCGAATTTCAAGGGCGGCGTCGAAGCG
GCTACCAACAAGTTCATCAAGGAGACACACTTTATGCCCGCCATTAACAG
CGAGGCCGAGTTGCTGCGCCAGCAGGTGGAGTTCATCAACAAGAATCGGC
AGTACATTGAGAAGCGACGCATGGAACGCTCGCCACCGTCGTCGGGCTCC
TCCACCGGAGCCGCCTCGTCCGGCCAGGCAGGCGAACGGAGGCGAACACG
TAGCCGCAGTCGCTCTCGTGGTCGCAGTTACTCTCCCGTTAAGCGCGTGG
AAAGAGAACGCGAGCGGGAGCGGGAGCGCGAGAGGGATCGTGAAAGGGAT
CGGGAGCGAGATCGTGAACGATATGGCGCCAATCGGGCGGCTGGAAACCG
TGGATTCCGACGGGCATCGAGTCGGGATCGAGACGAGAATCGTGGCGCAG
CAAGCACCGCCAGTGCTCAAGGAGCGGGCGGATCAGCATCCAGCGGAGCT
GCGCCCCCCAAGCGACGAAGGAGTGGCTCGGCCGGAGGAGGCACTGCCCG
GAATCCATTCTCTGGCGAGCCGCGCGGCCGACCCTCCGAAACAGGCAGTC
GCAGTATGCCCAGCGACGAGGACGAGGAGACCCGCAACTATCGCCTTGAG
ATTGAGAAGCAGAAGCAACTGCGCGAGAAAATCATGCGAGACAAGGAGCT
GAAGCGTCGGCGCGCAGCCGAGGAGAAGCTACACGAGGAGAAACGCGCCG
AGCAGCACAACACTTCGCCAGCCCGCGACGACCAGGAGGTGGCCGCCGGA
CAAGGATCTGCAGCGCCAACACCTGCAGCGTCAAAGCATCGGCCAACCGC
ATCAGCCGGCGAGCGCAAGGTGATCTCGCTGAAGCGTCGCGACGACCAGG
ATGCGAGCAGCGTACGCAGCAGGCAGGCACAGGGATCGCAGTCCAATGCT
CAGGCAGGCCAAGGTCAGCAGCAGCAGCAGGCGGCGCGCAAGCAACTAAC
GGCGGCGAAGATAGCGCCAGAGGCAAAGCGCAGTATAACCGATCACCTGG
CGCCATCCTCTAAGCAGCATCATCATCATCATCAGCAGCATCATCAGACT
GCAGCGGCGCCGGCGAGAACGGTGGTATTGGGATCGGGAGCTGTGGCCGG
CGGCACACCGCCGAAGCCGCGCGATAAGCTGCGCCTGGGCACGCCAAGCG
ACGATGAAGTGGAGCTGGACTATGATGACGATGACCTGCTGCTGGACGAG
GAGGATCGTTTGTTGGCCACGCCATCGCCGCCGCCGCAGAAGGCGAGCAG
CAAAAGATCGGCCACGCCGGAGCCCTTGGTGGTCAAGCGGAACCACAAGG
CGATGCGTGGCGGCAGCTCGACATCAGCGCCCAGCTTTAGCTCCAACCAG
CGGCGAGTGGTGCTCAAGCCGACCAGCAATGGCAGCAGCAGCAGCGGAGG
AGATCAGCAGCAGTTGTCGCACAGCGGCAGGCAGCGGGATCGGAGGCGCG
GTGGAGAGGATAGCGCACTGCAGCGGAAAGGTGGAGTAGGAAGCGTTGGC
GGCAGCAGCAGCTCGGGATCTGGCGGAGGGATCTTCGATAGGCTGGAGAA
GCGTGTGGCCGTCTCAGGAGGAGGGAGCAGCGGTGGAGGCGGCGGGAGCA
GCCACAAGCAGCGATCCAAGGCGCCCGCCCGCATCGTACTCAAGCACGAT
TGAAAGCTTTCTAGACCAT
BS17729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2186-RB | 3387 | CG2186-PB | 1..3387 | 17..3403 | 16935 | 100 | Plus |
| CG2186-RA | 3387 | CG2186-PA | 1..3387 | 17..3403 | 16935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2186-RB | 7117 | CG2186-RB | 268..3654 | 17..3403 | 16935 | 100 | Plus |
| CG2186-RA | 4449 | CG2186-RA | 266..3652 | 17..3403 | 16935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10859599..10860897 | 1010..2308 | 6495 | 100 | Plus |
| X | 23542271 | X | 10861816..10862783 | 2436..3403 | 4840 | 100 | Plus |
| X | 23542271 | X | 10858443..10859125 | 121..803 | 3415 | 100 | Plus |
| X | 23542271 | X | 10859196..10859405 | 802..1011 | 1050 | 100 | Plus |
| X | 23542271 | X | 10860961..10861091 | 2308..2438 | 655 | 100 | Plus |
| X | 23542271 | X | 10858288..10858379 | 31..122 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:47:06 has no hits.
BS17729.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:43 Download gff for
BS17729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2186-RA | 266..3651 | 17..3402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:28 Download gff for
BS17729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2186-RA | 266..3651 | 17..3402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:53 Download gff for
BS17729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2186-RA | 266..3651 | 17..3402 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:53 Download gff for
BS17729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10858288..10858379 | 31..122 | 100 | -> | Plus |
| X | 10858445..10859125 | 123..803 | 100 | -> | Plus |
| X | 10859198..10859404 | 804..1010 | 100 | -> | Plus |
| X | 10859600..10860897 | 1011..2308 | 100 | -> | Plus |
| X | 10860962..10861090 | 2309..2437 | 100 | -> | Plus |
| X | 10861818..10862782 | 2438..3402 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:28 Download gff for
BS17729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10752321..10752412 | 31..122 | 100 | -> | Plus |
| arm_X | 10752478..10753158 | 123..803 | 100 | -> | Plus |
| arm_X | 10753231..10753437 | 804..1010 | 100 | -> | Plus |
| arm_X | 10753633..10754930 | 1011..2308 | 100 | -> | Plus |
| arm_X | 10754995..10755123 | 2309..2437 | 100 | -> | Plus |
| arm_X | 10755851..10756815 | 2438..3402 | 100 | | Plus |
BS17729.3prime Sequence
897 bp (819 high quality bases) assembled on 2007-05-29
> BS17729.3prime
ATGGTCTAGAAAGCTTTCAATCGTGCTTGAGTACGATGCGGGCGGGCGCC
TTGGATCGCTGCTTGTGGCTGCTCCCGCCGCCTCCACCGCTGCTCCCTCC
TCCTGAGACGGCCACACGCTTCTCCAGCCTATCGAAGATCCCTCCGCCAG
ATCCCGAGCTGCTGCTGCCGCCAACGCTTCCTACTCCACCTTTCCGCTGC
AGTGCGCTATCCTCTCCACCGCGCCTCCGATCCCGCTGCCTGCCGCTGTG
CGACAACTGCTGCTGATCTCCTCCGCTGCTGCTGCTGCCATTGCTGGTCG
GCTTGAGCACCACTCGCCGCTGGTTGGAGCTAAAGCTGGGCGCTGATGTC
GAGCTGCCGCCACGCATCGCCTTGTGGTTCCGCTTGACCACCAAGGGCTC
CGGCGTGGCCGATCTTTTGCTGCTCGCCTTCTGCGGCGGCGGCGATGGCG
TGGCCAACAAACGATCCTCCTCGTCCAGCAGCAGGTCATCGTCATCATAG
TCCAGCTCCACTTCATCGTCGCTTGGCGTGCCCAGGCGCAGCTTATCGCG
CGGCTTCGGCGGTGTGCCGCCGGCCACAGCTCCCGATCCCAATACCACCG
TTCTCGCCGGCGCCGCTGCAGTCTGATGATGCTGCTGATGATGATGATGA
TGCTGCTTAGAGGATGGCGCCAGGTGATCGGTTATACTGCGCTTTGCCTC
TGGCGCTATCTTCGCCGCCGTTAGTTGCTTGCGCGCCGCCTGCTGCTGCT
GCTGACCTTGGCCTGCCTGAGCATTGGACTGCGATCCCTGTGCCTGCCTG
CTGCGTACGCTGCTCGCATCCTGGTCGTCGCGACGCTTCAGCGAGATCAC
CTTGCGCTCGCCGGCTGATGCNGTTGGCCGATGCTTTGACGCTGCAG
BS17729.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2186-PA | 3387 | CG2186-RA | 2507..3387 | 897..17 | 4386 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2186-RB | 7117 | CG2186-RB | 2774..3654 | 897..17 | 4394 | 99.9 | Minus |
| CG2186-RA | 4449 | CG2186-RA | 2772..3652 | 897..17 | 4394 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10861903..10862783 | 897..17 | 4394 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:25:17 has no hits.
BS17729.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:25:35 Download gff for
BS17729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2186-PA | 2507..3387 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:39:51 Download gff for
BS17729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2186-RA | 2772..3656 | 14..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:09 Download gff for
BS17729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2186-RA | 2772..3656 | 14..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:09 Download gff for
BS17729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10861903..10862787 | 14..897 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:39:51 Download gff for
BS17729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10755936..10756820 | 14..897 | 99 | | Minus |
BS17729.pep Sequence
Translation from 16 to 3402
> BS17729.pep
MSDINDDLLNYELGDDIDDQALLGADEDELLLSDEELEKDVTSEVKQQMR
AEAEEWAQEQIRQHERKHKEQLQADATAATEVTVAATATAEVAPTLRAQP
ELASSPAPDPVPAKPLVAQVEKHVDTAHAAVAAEPAKELVSASRSESPQQ
QAKEEAPPADCAEKEATQNNGNSEEQAENAGSQSEAERGLGLCSLLASSQ
ESLPSASSASVISDPREDDEEREERTNYKTASERSDNNLRQQQEHAHMSP
YQHQQRRLHGHGDKPRVGGGGRFMHGQQQQQQQQQSQMGKPPRGIGTRHH
LLRNPSPSFGIQQQRMGMAGMQPPPQRYGMPGQYPATQPPNQSPQQAPTN
TQQPHSAPASPLHTPTHSHMMHHSHNPNGGVLHHLLPHPHEQVRVGLLQP
PPLAYAPNPGGYRNGALLGPGPGPGLHQQHQSPHQQQSGMRPPLYRNAPP
SYGYDQGHPPQHPQQFMRPHNGWRPQGDNARMQRPPLQTLPPHMMPGAPP
NYANGMGMRGPPPQQQQSQQPPQQQPAPQQAGNPLQQAVNPGQPPQQPNG
PPQQQGSSSVPRVSKVLINPNFKGGVEAATNKFIKETHFMPAINSEAELL
RQQVEFINKNRQYIEKRRMERSPPSSGSSTGAASSGQAGERRRTRSRSRS
RGRSYSPVKRVERERERERERERDRERDRERDRERYGANRAAGNRGFRRA
SSRDRDENRGAASTASAQGAGGSASSGAAPPKRRRSGSAGGGTARNPFSG
EPRGRPSETGSRSMPSDEDEETRNYRLEIEKQKQLREKIMRDKELKRRRA
AEEKLHEEKRAEQHNTSPARDDQEVAAGQGSAAPTPAASKHRPTASAGER
KVISLKRRDDQDASSVRSRQAQGSQSNAQAGQGQQQQQAARKQLTAAKIA
PEAKRSITDHLAPSSKQHHHHHQQHHQTAAAPARTVVLGSGAVAGGTPPK
PRDKLRLGTPSDDEVELDYDDDDLLLDEEDRLLATPSPPPQKASSKRSAT
PEPLVVKRNHKAMRGGSSTSAPSFSSNQRRVVLKPTSNGSSSSGGDQQQL
SHSGRQRDRRRGGEDSALQRKGGVGSVGGSSSSGSGGGIFDRLEKRVAVS
GGGSSGGGGGSSHKQRSKAPARIVLKHD*
BS17729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2186-PB | 1128 | CG2186-PB | 1..1128 | 1..1128 | 5901 | 100 | Plus |
| CG2186-PA | 1128 | CG2186-PA | 1..1128 | 1..1128 | 5901 | 100 | Plus |
| ena-PB | 834 | CG15112-PB | 344..820 | 277..783 | 274 | 26.5 | Plus |
| ena-PE | 684 | CG15112-PE | 90..670 | 179..783 | 265 | 25.6 | Plus |
| ena-PC | 684 | CG15112-PC | 90..670 | 179..783 | 265 | 25.6 | Plus |
