Clone Sequence Records
BS17731.complete Sequence
1778 bp assembled on 2009-12-08
GenBank Submission: KX803687
> BS17731.complete
GAAGTTATCAGTCGACATGGAGAAAACGGAAAATACTAAAAATTCTCGCA
CCACCTACGAAGTGCAAAGGGATTTTGGCTTCAGCAGTGGGCTGCGTTCG
GAAATTATTTGGGATTCACTAGCCCCGGATCAGGGTGATGTTCTAAAGCA
AAAGATAGAGAACCTCATTCGCGATGATGACGCCCGCAATGGCAAGGCGA
TTCAACGAAAGCGGGAGCAGCTTTTCCGGAATATTTGGCAGCAGCGCTGT
TACACCAACGGCACATTGCTCTCCGCCATAATTTACGTGCTAGTCACGCC
GGATACAGACCCGGAATCGGCGCTGCAGTCTACCAACTACTCCTGTCACC
CGGTTTTTCGCACACGGCGCTGTTTGAAGGGCGAGAACAGCGCCGCTTGT
TGCATGATTTTTGTGGACGAAAATGCACGGGTCTACGCCAATTGGGAGCA
GTTCGTCTTCCGGAACACCTTGCCCAAGGGCTTGATGATCGCCCCTAGCC
AAGGAATTTACACATTCACCGGCGACGAGGAGCCGGGCGTCCAGTTGATG
GTCCATCCAACGCCAGCAGCACGTGCCAGGTATAAAATTCTGAATGCTGG
CGATAAAGTCGCCACTGTTGGTAGCTTGGTGGCCAGTGTTCCGGCGGCTG
CAGCTTTGGCTGTGCCTCTGGGCGCTCCGCTCGCGATTGCCGCCACCGCT
GTGGGCGTGGCCACCGGAGTCTACAGCACCCTGCGCTCTGCCTCCCATCT
TATCGATCGTCGACGGCACGGACAGTCCACCTGCATCACGGATACCGAGG
CACGCAGCTCTTGGTTGGGCGTAGCAGGTGGCGTTGTGGGTCTAGGAGCC
AGTGGGGCCACAAAAGCTCTGTCCACCGCTGCAGGAGCTGGCTACAAAGT
TAATCCCGCTGCGCAGTTAGCCGTTAGGGGGATAAATGGTGCCTCAATGG
TCATCGCCGGAACGGGTGTAGCGAATGGTGTTTACGATTTATATTCGAAA
CATGGAGATGACCAAGCCATAAACAGCTTGGACATGCTGAAGATGGCCTC
GCACCTTGTGATATTCACTCATTCCATCAACAATATGCGCATCGCTTCCA
AGGCTACCAACGGGTCTTCCTTGAGGCGAGCACTTCGAAATCAATCCAGA
AAAATCTTTGATCGAATCTCCCAGGAAACAGTTAAGCTGCACAATGAATC
TGGTCAATTTGATATTGTGAGAACCCTCAACGAAATCCCTTTTAAGGAGG
TACTCCTCAGTCTTCACAATATGAACTCACACCTAAGTCAGGGACTTACA
GTGGCCACCACTTTATTGCCCCAAATACTGAGTTACGGCATTGGCGGGCA
GATGGTGATCAATATGGACATGCTCGCACAGAAGTTCGGCGGAAAATTCG
TTGAGCATATCGGCAATCTGGCTAGCTTTACGGACGTTTTGGAGGCCATG
GCCAGATACTTCAGCGATCAGGCTGTACAGCTTCTAATGCAGATGACCCG
CACATTCGTAGAGGAGAACGTGGATTACATTGATCGCTCGCTGAATACGT
TCGTATCAACTGAAGCGGTCCTCTATCGCATTCTAATGCATTGCGTTAAA
ACCTTTGATGACTTCGGCGAAGATTTCCTTCAGAGACAACGTGAGGATAT
TTTGATGGTGGTATCCAAGTACTTTCGATCACTGGAGCCAGTTGGCGAAC
AAAACTGCCGCAAGTACAAATGCAACGTTTGCAAAGGCGCCTACTATATT
AGTTCCATATAAAAGCTTTCTAGACCAT
BS17731.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7730-RC | 1746 | CG7730-PC | 1..1746 | 17..1762 | 8730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7730-RC | 2123 | CG7730-RC | 155..1900 | 17..1762 | 8730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17027828..17028707 | 118..997 | 4400 | 100 | Plus |
| 3L | 28110227 | 3L | 17028976..17029591 | 1147..1762 | 3080 | 100 | Plus |
| 3L | 28110227 | 3L | 17028765..17028917 | 997..1149 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 17027669..17027769 | 17..117 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:49:57 has no hits.
BS17731.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:57 Download gff for
BS17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7730-RC | 149..1892 | 17..1760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:04 Download gff for
BS17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7730-RC | 155..1898 | 17..1760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:23 Download gff for
BS17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7730-RC | 149..1892 | 17..1760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:51 Download gff for
BS17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7730-RC | 155..1898 | 17..1760 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:51 Download gff for
BS17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17027669..17027769 | 17..117 | 100 | -> | Plus |
| 3L | 17027828..17028707 | 118..997 | 100 | -> | Plus |
| 3L | 17028766..17028917 | 998..1149 | 100 | -> | Plus |
| 3L | 17028979..17029589 | 1150..1760 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:04 Download gff for
BS17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17020769..17020869 | 17..117 | 100 | -> | Plus |
| arm_3L | 17020928..17021807 | 118..997 | 100 | -> | Plus |
| arm_3L | 17021866..17022017 | 998..1149 | 100 | -> | Plus |
| arm_3L | 17022079..17022689 | 1150..1760 | 100 | | Plus |
BS17731.3prime Sequence
781 bp (762 high quality bases) assembled on 2007-05-29
> BS17731.3prime
ATGGTCTAGAAAGCTTTTATATGGAACTAATATAGTAGGCGCCTTTGCAA
ACGTTGCATTTGTACTTGCGGCAGTTTTGTTCGCCAACTGGCTCCAGTGA
TCGAAAGTACTTGGATACCACCATCAAAATATCCTCACGTTGTCTCTGAA
GGAAATCTTCGCCGAAGTCATCAAAGGTTTTAACGCAATGCATTAGAATG
CGATAGAGGACCGCTTCAGTTGATACGAACGTATTCAGCGAGCGATCAAT
GTAATCCACGTTCTCCTCTACGAATGTGCGGGTCATCTGCATTAGAAGCT
GTACAGCCTGATCGCTGAAGTATCTGGCCATGGCCTCCAAAACGTCCGTA
AAGCTAGCCAGATTGCCGATATGCTCAACGAATTTTCCGCCGAACTTCTG
TGCGAGCATGTCCATATTGATCACCATCTGCCCGCCAATGCCGTAACTCA
GTATTTGGGGCAATAAAGTGGTGGCCACTGTAAGTCCCTGACTTAGGTGT
GAGTTCATATTGTGAAGACTGAGGAGTACCTCCTTAAAAGGGATTTCGTT
GAGGGTTCTCACAATATCAAATTGACCAGATTCATTGTGCAGCTTAACTG
TTTCCTGGGAGATTCGATCAAAGATTTTTCTGGATTGATTTCGAAGTGCT
CGCCTCAAGGAAGACCCGTTGGTAGCCTTGGAAGCGATGCGCATATTGTT
GATGGAATGAGTGAATATCACAAGGTGCGAGGCCATCTTCAGCATGTCCA
AGCTGTTTATGGCTTGGTCATCTCCATGTTT
BS17731.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7730-PC | 1746 | CG7730-RC | 982..1746 | 781..17 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7730-RC | 2123 | CG7730-RC | 1136..1900 | 781..17 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:43:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17028976..17029591 | 632..17 | 3080 | 100 | Minus |
| 3L | 28110227 | 3L | 17028766..17028917 | 781..630 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:43:27 has no hits.
BS17731.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:25:48 Download gff for
BS17731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7730-PC | 982..1746 | 17..781 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:46 Download gff for
BS17731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7730-RC | 1136..1903 | 12..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:16:59 Download gff for
BS17731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7730-RC | 1136..1903 | 12..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:16:59 Download gff for
BS17731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17028766..17028917 | 630..781 | 100 | -> | Minus |
| 3L | 17028979..17029594 | 12..629 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:46 Download gff for
BS17731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17021866..17022017 | 630..781 | 100 | -> | Minus |
| arm_3L | 17022079..17022694 | 12..629 | 99 | | Minus |
BS17731.5prime Sequence
823 bp (809 high quality bases) assembled on 2007-05-29
> BS17731.5prime
GAAGTTATCACTCGACATGGAGAAAACGGAAAATACTAAAAATTCTCGCA
CCACCTACGAAGTGCAAAGGGATTTTGGCTTCAGCACTGGGCTGCGTTCG
GAAATTATTTGGGATTCACTAGCCCCGGATCAGGGTGATGTTCTAAAGCA
AAAGATAGAGAACCTCATTCGCGATGATGACGCCCGCAATGGCAAGGCGA
TTCAACGAAAGCGGGAGCAGCTTTTCCGGAATATTTGGCAGCAGCGCTGT
TACACCAACGGCACATTGCTCTCCGCCATAATTTACGTGCTAGTCACGCC
GGATACAGACCCGGAATCGGCGCTGCAGTCTACCAACTACTCCTGTCACC
CGGTTTTTCGCACACGGCGCTGTTTGAAGGGCGAGAACAGCGCCGCTTGT
TGCATGATTTTTGTGGACGAAAATGCACGGGTCTACGCCAATTGGGAGCA
GTTCGTCTTCCGGAACACCTTGCCCAAGGGCTTGATGATCGCCCCTAGCC
AAGGAATTTACACATTCACCGGCGACGAGGAGCCGGGCGTCCAGTTGATG
GTCCATCCAACGCCAGCAGCACGTGCCAGGTATAAAATTCTGAATGCTGG
CGATAAAGTCGCCACTGTTGGTAGCTTGGTGGCCAGTGTTCCGGCGGCTG
CAGCTTTGGCTGTGCCTCTGGGCGCTCCGCTCGCGATTGCCGCCACCGCT
GTGGGCGTGGCCACCGGAGTCTACAGCACCCTGCGCTCTGCCTCCCATCT
TATCGATCGTCGACGGCACGGACAGTCCACCTGCATCACGGATACCGAGG
CACGCAGCTCTTGGTTGGGCGTA
BS17731.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7730-PC | 1746 | CG7730-RC | 1..807 | 17..823 | 4010 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:48:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7730-RC | 2123 | CG7730-RC | 155..961 | 17..823 | 4020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17027828..17028533 | 118..823 | 3530 | 100 | Plus |
| 3L | 28110227 | 3L | 17027669..17027769 | 17..117 | 490 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:48:36 has no hits.
BS17731.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:25:52 Download gff for
BS17731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7730-PC | 1..806 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:01:48 Download gff for
BS17731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7730-RC | 152..960 | 14..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:22 Download gff for
BS17731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7730-RC | 152..960 | 14..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:22 Download gff for
BS17731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17027671..17027769 | 19..117 | 98 | -> | Plus |
| 3L | 17027828..17028532 | 118..822 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:01:48 Download gff for
BS17731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17020771..17020869 | 19..117 | 98 | -> | Plus |
| arm_3L | 17020928..17021632 | 118..822 | 100 | | Plus |
BS17731.pep Sequence
Translation from 16 to 1761
> BS17731.pep
MEKTENTKNSRTTYEVQRDFGFSSGLRSEIIWDSLAPDQGDVLKQKIENL
IRDDDARNGKAIQRKREQLFRNIWQQRCYTNGTLLSAIIYVLVTPDTDPE
SALQSTNYSCHPVFRTRRCLKGENSAACCMIFVDENARVYANWEQFVFRN
TLPKGLMIAPSQGIYTFTGDEEPGVQLMVHPTPAARARYKILNAGDKVAT
VGSLVASVPAAAALAVPLGAPLAIAATAVGVATGVYSTLRSASHLIDRRR
HGQSTCITDTEARSSWLGVAGGVVGLGASGATKALSTAAGAGYKVNPAAQ
LAVRGINGASMVIAGTGVANGVYDLYSKHGDDQAINSLDMLKMASHLVIF
THSINNMRIASKATNGSSLRRALRNQSRKIFDRISQETVKLHNESGQFDI
VRTLNEIPFKEVLLSLHNMNSHLSQGLTVATTLLPQILSYGIGGQMVINM
DMLAQKFGGKFVEHIGNLASFTDVLEAMARYFSDQAVQLLMQMTRTFVEE
NVDYIDRSLNTFVSTEAVLYRILMHCVKTFDDFGEDFLQRQREDILMVVS
KYFRSLEPVGEQNCRKYKCNVCKGAYYISSI*
BS17731.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7730-PC | 581 | CG7730-PC | 1..581 | 1..581 | 2970 | 100 | Plus |
| pst-PG | 682 | CG8588-PG | 7..451 | 6..425 | 827 | 43 | Plus |
| pst-PE | 682 | CG8588-PE | 7..451 | 6..425 | 827 | 43 | Plus |
| pst-PF | 707 | CG8588-PF | 7..476 | 6..425 | 792 | 40.9 | Plus |
| CG32243-PA | 485 | CG32243-PA | 239..481 | 339..578 | 199 | 26.6 | Plus |
| pst-PG | 682 | CG8588-PG | 473..679 | 364..578 | 177 | 25 | Plus |
| pst-PE | 682 | CG8588-PE | 473..679 | 364..578 | 177 | 25 | Plus |
| pst-PF | 707 | CG8588-PF | 498..704 | 364..578 | 177 | 25 | Plus |
